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LOCUS XM_017139485 6029 bp mRNA linear INV 09-DEC-2024 member 3 (Abca3), transcript variant X3, mRNA. ACCESSION XM_017139485 VERSION XM_017139485.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139485.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6029 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6029 /gene="Abca3" /note="ATP binding cassette subfamily A member 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055910" CDS 293..5485 /gene="Abca3" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X1" /protein_id="XP_016994974.2" /db_xref="GeneID:108055910" /translation="MAKVTNWDKFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVL VRTLVDTEQRGVKYYVEQNITDLSLLQHSLHRSSYLGKLIALIAPNRRSTGLSNFKFI VCYSPVNPVLKKLVDEAWQSLGMKDVCESENAAQLEVDTVSQSAFAGIQFDDAWANLT ESDPLPDDFHFALRFPSELRTATMAIANTWLTMRLFPTIDLTGPRNEADQDGGIPPGY LREGFLPLQHSLSMAYLRQKSGVESLPEIMMQRYPYPAYIYDPLLEGMSSIMSLIILL SFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILV KINWSEGVAVLTHANFTALVFFLIIYIIASICFCFMMATFFSRASTAAAVTGLIWFIA YIPYSFTINTYDDLSLTAKLGWSLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSV DDTLTLGAVMIMMLVSCVICMTICLYVEQVMPGSFGVPRPWNFPFTREFWCGEREYAG VEDIPNGHVEQRDPKAFETEPEGKHIGLQMRHLKKKFGDKMVVKGLSMNMFEDEITVL LGHNGAGKTTTISMLTGMFPPTSGTAILNGSDIRTNIEGARMSLGICPQHNVLFDEMS VSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALC GDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCD GELKCHGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKFIPGLKPECDIGAELSY QLPDSASSKFEEMFGQLEDQSDELHLNGYGVGITSMEEVFMKVGAEKDSTGNLKDQSE IMNGGSGFRGEDDNESVQSDGIFSENRRLLQGFQLLSNQWKAMLLKKFLYTWRNKLLL LIQNIMPVFFVVVTILIIETQGTFQELKPITMSLTQYPLAVTVLDRSAVANGTSTANL ANSYEKMALAHGSNYGLELTGKQLFEDYILELGKTIQVRINSRYLVAATINETMIIAW LNNQALHTAPLTVNMVHNAIADQLMGSNVRIEVTNAPLPYTTNTLLSQLSMGNNLGTQ LASNLCFCMCFVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFATYIVTA LIVVITIVCFQEPGLSSFAELGRYYLLLLLFGFAVLPFIYIMSLFFKEPATGFARVSI VNIFCGMALFIVVVVMSSELFDTKDTADILGWIFRIFPHFSLAMGLNKVYTNTATRNA CAKAGAIPPILLCELVPQCCNIKPFFAWEEPGVLPETVYMTVTGVVFFLIIIVLEFRL INELMFKIRQMLTKPPPPPPEGHLDDDVANERERIIHMSSDELVTKNLVLDRVTKYYG QFLAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMN SIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDK QTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIV LTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQAR LSAGFARNPDEQTVPAQMAQQDIDAVKEFVEHEYPHSILQEEYQGILTFYIPLTGVKW SRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEFAKYQREDTRANHRLSELRKLCKCLL ANEY" misc_feature <731..5413 /gene="Abca3" /note="retinal-specific rim ABC transporter; Region: rim_protein; TIGR01257" /db_xref="CDD:130324" polyA_site 6029 /gene="Abca3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctccggcggc gttagaatga cagtgcaaat agaggtgtgc agaaagggca acgggtcagc 61 ataaataatt aattgcaatt gccgcgagtc cattgccaat cgattatgca gtaatgctcg 121 acgccgatct aatttttatc actaagtggg cccgcactta atcgcacaaa caacaaacag 181 aattgcaatt tcaattattg cccgcaaaac gtggaaagga tcctaatttt aaccaatttt 241 aatgtcgaga taatctagaa aaagcgaaaa gccaatcaaa caaagctgca aaatggctaa 301 ggtcacgaac tgggacaagt ttgtgctgct gctgtggaag aactggacgc tccaatggaa 361 ccacaagtgg cagatggtca tcgagctggt gctgccggcg atattctccc tgctcctcgt 421 cttggtccgc accctggtcg atacggagca gaggggggtc aagtactatg tggagcagaa 481 tataacagat ctcagtttgt tgcaacattc gttgcataga tcgtcctacc ttggcaagct 541 catagcgctg attgcaccca atcgacggag caccggcttg tcaaacttca agttcatcgt 601 gtgctactca cccgtgaatc ctgtgctcaa gaaactggtg gacgaggcgt ggcagagcct 661 gggaatgaag gatgtgtgcg agtcggagaa cgcggcccaa ctggaggtgg acacggtcag 721 tcagagcgcc tttgccggca tccagttcga cgatgcgtgg gccaatctca cggagtcgga 781 tccactgccc gatgattttc acttcgccct gcgcttcccc tcggaactgc gaacggcgac 841 gatggccatt gcgaatacct ggctaacgat gcgattgttc ccaacgattg atctcacggg 901 tccgcgaaat gaggcggatc aggatggtgg cataccgccg ggctatttga gagagggttt 961 cctgccactg cagcacagcc tgtcgatggc gtacctgagg cagaagtcgg gcgtagagag 1021 tctgccggaa ataatgatgc aacgctatcc gtatccagcc tacatctacg atcccctgct 1081 cgagggcatg tcctcgataa tgtcgctgat catactgctg agcttcatct atccctgcac 1141 gtacatcacc aagtacatca ccgccgagaa ggagaagcag ctgaaggagg tgatgaagat 1201 catgggcctg agcaattggc tgcactggac ggcctggttt gtgaagtcct tcatcatgct 1261 aacgatatcg gccattctga tagccatact ggtcaagatc aattggtccg aaggggtggc 1321 cgtgctgacg catgccaatt tcactgcgct cgtcttcttc ctgatcatct acatcatagc 1381 gagcatctgt ttctgcttca tgatggccac cttcttctcg cgcgccagca cagcggccgc 1441 cgtcacgggt ctgatatggt tcatcgccta cataccctac tcgtttacca tcaacaccta 1501 cgacgacctg agtttgacgg ccaaactggg ctggagcctg atctcgaaca cggccatggg 1561 cttcggcatc aagctgatcc tgggcttcga gggcaccggc gagggtctgc agtggagcaa 1621 cttctttacg cccgtctccg tggacgacac actgacgctg ggcgccgtga tgatcatgat 1681 gctggtgtcg tgcgtcatct gcatgaccat ctgtctgtat gtggagcaag tgatgccggg 1741 cagcttcggt gtgccgcgtc cctggaactt tccgtttacc cgcgagtttt ggtgcggcga 1801 acgggagtac gcgggagtgg aggacatacc caacgggcat gtggagcagc gcgaccccaa 1861 ggcctttgaa acggagcccg agggcaagca tatcggtctg cagatgcggc acttgaagaa 1921 gaagtttggc gacaagatgg ttgtgaaggg tctgtccatg aatatgttcg aagatgagat 1981 taccgtgtta ctcgggcaca atggagccgg taagacaacg accatatcga tgttaaccgg 2041 catgtttcca ccgacgagcg gcacggccat tctgaacggc agcgatattc gcaccaatat 2101 cgaaggtgcc cgcatgtcgc tcggcatttg tccgcagcac aatgtcctct tcgacgagat 2161 gagtgtgtcg aatcacatac gcttcttcag ccgcatgaag ggactgcgcg gcaaggcggt 2221 ggagcaggag gtggccaagt atctgaagat gatcgagctg gaggacaagg cgaatgtggc 2281 ctcgtcgaaa ctgtcgggcg gcatgaagcg caagctctcc gtctgctgtg ccctctgcgg 2341 cgacaccaag gtggtgctgt gcgacgagcc cagctcgggc atggatccat cggccaggcg 2401 acagctgtgg gatctgctgc agcaggagaa ggtcggtcgc accctgctgc tgaccacgca 2461 cttcatggac gaggccgatg tgctgggcga tcggattgcc atcatgtgcg acggcgagct 2521 caagtgccac ggaacctcct tcttcctgaa gaaacaatac ggatcgggct accgcttgat 2581 ctgtgtaaag cgagatgatt gcgaaacgaa cgaggtgacc gccctgctga acaagtttat 2641 tcccggcctg aagccggagt gcgacattgg cgccgagctg tcctatcaac tgcccgatag 2701 cgcctcctcc aagttcgagg agatgttcgg ccagctggag gatcagtccg acgaactgca 2761 tctgaatggc tacggcgtgg gcatcacctc gatggaggag gtgtttatga aggtcggcgc 2821 cgagaaggac agcaccggca acctgaagga ccagagcgag attatgaacg gcggcagcgg 2881 cttccgcggc gaggatgaca acgaatctgt acagtccgat ggcatcttct cggagaatcg 2941 ccgcctgctc cagggattcc agctgctctc gaaccaatgg aaggccatgc tgctcaagaa 3001 gttcctctat acgtggcgca acaagttgct gctgctcatc cagaacatta tgcccgtctt 3061 ctttgtggtc gtgaccattt tgattatcga aacgcagggc actttccagg aactgaagcc 3121 cataaccatg tcgttgactc agtatccact ggccgtcacc gttttggatc gctccgcggt 3181 ggcgaatggt acgtccaccg cgaatctagc caatagttat gagaaaatgg ccctggccca 3241 tggcagcaat tacggtttgg aactgacggg caagcagctc tttgaggact acatcctgga 3301 gctgggcaag acgatccagg tgcgcatcaa ctcgcgttac ctggtggccg ccaccatcaa 3361 cgagaccatg atcattgcct ggctaaacaa tcaggctctg catacggctc ccctgaccgt 3421 caatatggtg cacaatgcta ttgccgatca gctgatgggt tcgaatgtga gaatcgaggt 3481 gaccaatgcc ccgctgccgt acacgaccaa cactctgctg tcgcagctaa gcatgggcaa 3541 taatctgggc acccagctgg cctccaatct ttgcttctgc atgtgcttcg ttagctccat 3601 ctacatcctg ttcctgatca aggagcgcga gtccagggcc aagctgctgc agtttgtggg 3661 cggcgtgaaa gtttggacct tctggctgtc gcagttcatt tgcgatttcg ccacctacat 3721 tgtgaccgct ctgatcgtcg tgatcacgat cgtctgcttc caggagccgg ggctctcgag 3781 cttcgcggaa ctgggccgat actatttgct gctgctgctc ttcggcttcg ccgttctgcc 3841 cttcatctac attatgtcgc tgttcttcaa ggagccggcc accgggtttg ctcgcgtctc 3901 catcgtcaat atcttctgcg gcatggccct gttcattgtc gtggtggtaa tgtcctcgga 3961 gctattcgac accaaggaca cggccgacat actgggctgg atattccgca tctttccgca 4021 cttttcgctg gccatgggtc tgaacaaggt ctacacgaac acggccacga ggaatgcctg 4081 cgccaaggcc ggagcgatcc cacccattct gctctgcgag ctggtgccac aatgctgcaa 4141 catcaagccg ttcttcgcct gggaggagcc tggcgttctg cccgagaccg tctacatgac 4201 tgtcaccggc gtcgtcttct tcctcatcat cattgtgctg gagtttagac tcatcaacga 4261 gctaatgttc aagatccgtc aaatgttaac taaaccaccg ccaccaccgc cggagggcca 4321 cttggatgac gatgtggcca acgaacggga gcgcattatt cacatgtcct cggatgagct 4381 ggtcaccaag aatctagtgc tggatcgggt caccaagtac tacggtcagt tcctggccgt 4441 caatcaggtg tcgctctgcg tacaggaagt cgaatgcttt gggctgctgg gcgtgaacgg 4501 agcaggcaag acaacgacct tcaagatgat gaccggcgac gagcggatca gctcgggagc 4561 cgcctacgtc caaggtctga gcctggaatc gaacatgaac agcatttaca agatgatcgg 4621 ctactgtccg cagttcgatg cgctgctgga cgatctgacg ggtcgcgagg tgctgcgcat 4681 tttctgcatg ctgcgcggcg tgcaggagtc tcgcattcgc cagctctcgg aggatctggc 4741 caagtcgttt ggcttcatga agcacatcga caagcagacg cacgcctata gtggcggcaa 4801 taagcgtaag ctgagcacgg ccattgctgt gatcggcagt ccgtccgtca tttacctgga 4861 tgagcccacc acgggcatgg atccggcggc caggcgtcag ctgtggaata tggtctgtcg 4921 cattcgtgac tcgggcaaat ccattgtcct gacctcccac agcatggagg agtgcgaggc 4981 gctgtgcacg cgactggcca ttatggtgaa tggtgaattc aagtgcattg gctccacgca 5041 gcacttgaag aacaagttct ccaagggcct gatcctcaag atcaaggtgc gtcgcaatct 5101 ggaggcgctg cggcaggcgc gtttgagcgc cggctttgct cgcaatccgg atgagcagac 5161 ggtgcccgcc caaatggccc agcaggacat agatgccgtc aaggagtttg tggagcacga 5221 gtatccacac tccatactgc aggaggagta ccagggcatt ttgacgttct acattccact 5281 gactggggtg aaatggtcgc gcatctttgg cctgatggag agcaatcgcg atcagctgaa 5341 tgtggaggac tactcggtca gccagacgac gctggaggag atcttcctgg agttcgccaa 5401 gtaccagcgc gaggatacgc gcgccaatca ccgcctctcc gaactgagga agctgtgcaa 5461 gtgcctgcta gcaaatgagt attgaaccaa ctacctgaac ggatccgatc cgatcctgag 5521 atcttaaaac actcacagat aataatgttt tataccaaaa aagaacaacg ccgatgcctg 5581 aacagctaac aaatagtttc taagctcgac ctgacaatag atagcagcga ttatgccttt 5641 tttcattgtg atcatctagc aaaatttaca ctataacgaa gagatatcta taaactgtat 5701 gttttctata tatatatata gttatatctg cttgacttgc acgataagtt ccgatgatct 5761 tttctgtctt gtttaatcac tcttttttcg ccccctaaaa agtattggcc agttgtggcc 5821 ggaaactatt cccagcgcct aaaggaaact tgttgcatat agagagtact aaatatatgt 5881 gtatttattt cgatgtactt agaccggata accaaagcgt gtaaataagt caatttaact 5941 gtggcacaaa ctctacgata catatgagaa tttacaaata atgttaaatg tgtactatac 6001 gattgaatta aattttatct aaatgtaaa