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LOCUS XM_017139484 6295 bp mRNA linear INV 09-DEC-2024 member 3 (Abca3), transcript variant X2, mRNA. ACCESSION XM_017139484 VERSION XM_017139484.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139484.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6295 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6295 /gene="Abca3" /note="ATP binding cassette subfamily A member 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055910" CDS 559..5751 /gene="Abca3" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X1" /protein_id="XP_016994973.2" /db_xref="GeneID:108055910" /translation="MAKVTNWDKFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVL VRTLVDTEQRGVKYYVEQNITDLSLLQHSLHRSSYLGKLIALIAPNRRSTGLSNFKFI VCYSPVNPVLKKLVDEAWQSLGMKDVCESENAAQLEVDTVSQSAFAGIQFDDAWANLT ESDPLPDDFHFALRFPSELRTATMAIANTWLTMRLFPTIDLTGPRNEADQDGGIPPGY LREGFLPLQHSLSMAYLRQKSGVESLPEIMMQRYPYPAYIYDPLLEGMSSIMSLIILL SFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILV KINWSEGVAVLTHANFTALVFFLIIYIIASICFCFMMATFFSRASTAAAVTGLIWFIA YIPYSFTINTYDDLSLTAKLGWSLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSV DDTLTLGAVMIMMLVSCVICMTICLYVEQVMPGSFGVPRPWNFPFTREFWCGEREYAG VEDIPNGHVEQRDPKAFETEPEGKHIGLQMRHLKKKFGDKMVVKGLSMNMFEDEITVL LGHNGAGKTTTISMLTGMFPPTSGTAILNGSDIRTNIEGARMSLGICPQHNVLFDEMS VSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALC GDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCD GELKCHGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKFIPGLKPECDIGAELSY QLPDSASSKFEEMFGQLEDQSDELHLNGYGVGITSMEEVFMKVGAEKDSTGNLKDQSE IMNGGSGFRGEDDNESVQSDGIFSENRRLLQGFQLLSNQWKAMLLKKFLYTWRNKLLL LIQNIMPVFFVVVTILIIETQGTFQELKPITMSLTQYPLAVTVLDRSAVANGTSTANL ANSYEKMALAHGSNYGLELTGKQLFEDYILELGKTIQVRINSRYLVAATINETMIIAW LNNQALHTAPLTVNMVHNAIADQLMGSNVRIEVTNAPLPYTTNTLLSQLSMGNNLGTQ LASNLCFCMCFVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFATYIVTA LIVVITIVCFQEPGLSSFAELGRYYLLLLLFGFAVLPFIYIMSLFFKEPATGFARVSI VNIFCGMALFIVVVVMSSELFDTKDTADILGWIFRIFPHFSLAMGLNKVYTNTATRNA CAKAGAIPPILLCELVPQCCNIKPFFAWEEPGVLPETVYMTVTGVVFFLIIIVLEFRL INELMFKIRQMLTKPPPPPPEGHLDDDVANERERIIHMSSDELVTKNLVLDRVTKYYG QFLAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMN SIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDK QTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIV LTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQAR LSAGFARNPDEQTVPAQMAQQDIDAVKEFVEHEYPHSILQEEYQGILTFYIPLTGVKW SRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEFAKYQREDTRANHRLSELRKLCKCLL ANEY" misc_feature <997..5679 /gene="Abca3" /note="retinal-specific rim ABC transporter; Region: rim_protein; TIGR01257" /db_xref="CDD:130324" polyA_site 6295 /gene="Abca3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tccggcggcg ttagaagtac tacactacta ttattattgt tttatcacag tgaacagctg 61 tttaaccctg aaaataaaat cacagcaaaa gttaatagat tgtgcaaaac aaataaagga 121 aatatagcga gtgcgcactt tgcttaatga atcgaataaa ctatgaactt ttgggccctc 181 aatgacgcag cgagagataa aaactaataa cagcactata tttgtacata tattgtttat 241 gtgtcgcggt gtttgtgcgg aataatcatt agacggccgc acgtgacagt gcaaatagag 301 gtgtgcagaa agggcaacgg gtcagcataa ataattaatt gcaattgccg cgagtccatt 361 gccaatcgat tatgcagtaa tgctcgacgc cgatctaatt tttatcacta agtgggcccg 421 cacttaatcg cacaaacaac aaacagaatt gcaatttcaa ttattgcccg caaaacgtgg 481 aaaggatcct aattttaacc aattttaatg tcgagataat ctagaaaaag cgaaaagcca 541 atcaaacaaa gctgcaaaat ggctaaggtc acgaactggg acaagtttgt gctgctgctg 601 tggaagaact ggacgctcca atggaaccac aagtggcaga tggtcatcga gctggtgctg 661 ccggcgatat tctccctgct cctcgtcttg gtccgcaccc tggtcgatac ggagcagagg 721 ggggtcaagt actatgtgga gcagaatata acagatctca gtttgttgca acattcgttg 781 catagatcgt cctaccttgg caagctcata gcgctgattg cacccaatcg acggagcacc 841 ggcttgtcaa acttcaagtt catcgtgtgc tactcacccg tgaatcctgt gctcaagaaa 901 ctggtggacg aggcgtggca gagcctggga atgaaggatg tgtgcgagtc ggagaacgcg 961 gcccaactgg aggtggacac ggtcagtcag agcgcctttg ccggcatcca gttcgacgat 1021 gcgtgggcca atctcacgga gtcggatcca ctgcccgatg attttcactt cgccctgcgc 1081 ttcccctcgg aactgcgaac ggcgacgatg gccattgcga atacctggct aacgatgcga 1141 ttgttcccaa cgattgatct cacgggtccg cgaaatgagg cggatcagga tggtggcata 1201 ccgccgggct atttgagaga gggtttcctg ccactgcagc acagcctgtc gatggcgtac 1261 ctgaggcaga agtcgggcgt agagagtctg ccggaaataa tgatgcaacg ctatccgtat 1321 ccagcctaca tctacgatcc cctgctcgag ggcatgtcct cgataatgtc gctgatcata 1381 ctgctgagct tcatctatcc ctgcacgtac atcaccaagt acatcaccgc cgagaaggag 1441 aagcagctga aggaggtgat gaagatcatg ggcctgagca attggctgca ctggacggcc 1501 tggtttgtga agtccttcat catgctaacg atatcggcca ttctgatagc catactggtc 1561 aagatcaatt ggtccgaagg ggtggccgtg ctgacgcatg ccaatttcac tgcgctcgtc 1621 ttcttcctga tcatctacat catagcgagc atctgtttct gcttcatgat ggccaccttc 1681 ttctcgcgcg ccagcacagc ggccgccgtc acgggtctga tatggttcat cgcctacata 1741 ccctactcgt ttaccatcaa cacctacgac gacctgagtt tgacggccaa actgggctgg 1801 agcctgatct cgaacacggc catgggcttc ggcatcaagc tgatcctggg cttcgagggc 1861 accggcgagg gtctgcagtg gagcaacttc tttacgcccg tctccgtgga cgacacactg 1921 acgctgggcg ccgtgatgat catgatgctg gtgtcgtgcg tcatctgcat gaccatctgt 1981 ctgtatgtgg agcaagtgat gccgggcagc ttcggtgtgc cgcgtccctg gaactttccg 2041 tttacccgcg agttttggtg cggcgaacgg gagtacgcgg gagtggagga catacccaac 2101 gggcatgtgg agcagcgcga ccccaaggcc tttgaaacgg agcccgaggg caagcatatc 2161 ggtctgcaga tgcggcactt gaagaagaag tttggcgaca agatggttgt gaagggtctg 2221 tccatgaata tgttcgaaga tgagattacc gtgttactcg ggcacaatgg agccggtaag 2281 acaacgacca tatcgatgtt aaccggcatg tttccaccga cgagcggcac ggccattctg 2341 aacggcagcg atattcgcac caatatcgaa ggtgcccgca tgtcgctcgg catttgtccg 2401 cagcacaatg tcctcttcga cgagatgagt gtgtcgaatc acatacgctt cttcagccgc 2461 atgaagggac tgcgcggcaa ggcggtggag caggaggtgg ccaagtatct gaagatgatc 2521 gagctggagg acaaggcgaa tgtggcctcg tcgaaactgt cgggcggcat gaagcgcaag 2581 ctctccgtct gctgtgccct ctgcggcgac accaaggtgg tgctgtgcga cgagcccagc 2641 tcgggcatgg atccatcggc caggcgacag ctgtgggatc tgctgcagca ggagaaggtc 2701 ggtcgcaccc tgctgctgac cacgcacttc atggacgagg ccgatgtgct gggcgatcgg 2761 attgccatca tgtgcgacgg cgagctcaag tgccacggaa cctccttctt cctgaagaaa 2821 caatacggat cgggctaccg cttgatctgt gtaaagcgag atgattgcga aacgaacgag 2881 gtgaccgccc tgctgaacaa gtttattccc ggcctgaagc cggagtgcga cattggcgcc 2941 gagctgtcct atcaactgcc cgatagcgcc tcctccaagt tcgaggagat gttcggccag 3001 ctggaggatc agtccgacga actgcatctg aatggctacg gcgtgggcat cacctcgatg 3061 gaggaggtgt ttatgaaggt cggcgccgag aaggacagca ccggcaacct gaaggaccag 3121 agcgagatta tgaacggcgg cagcggcttc cgcggcgagg atgacaacga atctgtacag 3181 tccgatggca tcttctcgga gaatcgccgc ctgctccagg gattccagct gctctcgaac 3241 caatggaagg ccatgctgct caagaagttc ctctatacgt ggcgcaacaa gttgctgctg 3301 ctcatccaga acattatgcc cgtcttcttt gtggtcgtga ccattttgat tatcgaaacg 3361 cagggcactt tccaggaact gaagcccata accatgtcgt tgactcagta tccactggcc 3421 gtcaccgttt tggatcgctc cgcggtggcg aatggtacgt ccaccgcgaa tctagccaat 3481 agttatgaga aaatggccct ggcccatggc agcaattacg gtttggaact gacgggcaag 3541 cagctctttg aggactacat cctggagctg ggcaagacga tccaggtgcg catcaactcg 3601 cgttacctgg tggccgccac catcaacgag accatgatca ttgcctggct aaacaatcag 3661 gctctgcata cggctcccct gaccgtcaat atggtgcaca atgctattgc cgatcagctg 3721 atgggttcga atgtgagaat cgaggtgacc aatgccccgc tgccgtacac gaccaacact 3781 ctgctgtcgc agctaagcat gggcaataat ctgggcaccc agctggcctc caatctttgc 3841 ttctgcatgt gcttcgttag ctccatctac atcctgttcc tgatcaagga gcgcgagtcc 3901 agggccaagc tgctgcagtt tgtgggcggc gtgaaagttt ggaccttctg gctgtcgcag 3961 ttcatttgcg atttcgccac ctacattgtg accgctctga tcgtcgtgat cacgatcgtc 4021 tgcttccagg agccggggct ctcgagcttc gcggaactgg gccgatacta tttgctgctg 4081 ctgctcttcg gcttcgccgt tctgcccttc atctacatta tgtcgctgtt cttcaaggag 4141 ccggccaccg ggtttgctcg cgtctccatc gtcaatatct tctgcggcat ggccctgttc 4201 attgtcgtgg tggtaatgtc ctcggagcta ttcgacacca aggacacggc cgacatactg 4261 ggctggatat tccgcatctt tccgcacttt tcgctggcca tgggtctgaa caaggtctac 4321 acgaacacgg ccacgaggaa tgcctgcgcc aaggccggag cgatcccacc cattctgctc 4381 tgcgagctgg tgccacaatg ctgcaacatc aagccgttct tcgcctggga ggagcctggc 4441 gttctgcccg agaccgtcta catgactgtc accggcgtcg tcttcttcct catcatcatt 4501 gtgctggagt ttagactcat caacgagcta atgttcaaga tccgtcaaat gttaactaaa 4561 ccaccgccac caccgccgga gggccacttg gatgacgatg tggccaacga acgggagcgc 4621 attattcaca tgtcctcgga tgagctggtc accaagaatc tagtgctgga tcgggtcacc 4681 aagtactacg gtcagttcct ggccgtcaat caggtgtcgc tctgcgtaca ggaagtcgaa 4741 tgctttgggc tgctgggcgt gaacggagca ggcaagacaa cgaccttcaa gatgatgacc 4801 ggcgacgagc ggatcagctc gggagccgcc tacgtccaag gtctgagcct ggaatcgaac 4861 atgaacagca tttacaagat gatcggctac tgtccgcagt tcgatgcgct gctggacgat 4921 ctgacgggtc gcgaggtgct gcgcattttc tgcatgctgc gcggcgtgca ggagtctcgc 4981 attcgccagc tctcggagga tctggccaag tcgtttggct tcatgaagca catcgacaag 5041 cagacgcacg cctatagtgg cggcaataag cgtaagctga gcacggccat tgctgtgatc 5101 ggcagtccgt ccgtcattta cctggatgag cccaccacgg gcatggatcc ggcggccagg 5161 cgtcagctgt ggaatatggt ctgtcgcatt cgtgactcgg gcaaatccat tgtcctgacc 5221 tcccacagca tggaggagtg cgaggcgctg tgcacgcgac tggccattat ggtgaatggt 5281 gaattcaagt gcattggctc cacgcagcac ttgaagaaca agttctccaa gggcctgatc 5341 ctcaagatca aggtgcgtcg caatctggag gcgctgcggc aggcgcgttt gagcgccggc 5401 tttgctcgca atccggatga gcagacggtg cccgcccaaa tggcccagca ggacatagat 5461 gccgtcaagg agtttgtgga gcacgagtat ccacactcca tactgcagga ggagtaccag 5521 ggcattttga cgttctacat tccactgact ggggtgaaat ggtcgcgcat ctttggcctg 5581 atggagagca atcgcgatca gctgaatgtg gaggactact cggtcagcca gacgacgctg 5641 gaggagatct tcctggagtt cgccaagtac cagcgcgagg atacgcgcgc caatcaccgc 5701 ctctccgaac tgaggaagct gtgcaagtgc ctgctagcaa atgagtattg aaccaactac 5761 ctgaacggat ccgatccgat cctgagatct taaaacactc acagataata atgttttata 5821 ccaaaaaaga acaacgccga tgcctgaaca gctaacaaat agtttctaag ctcgacctga 5881 caatagatag cagcgattat gccttttttc attgtgatca tctagcaaaa tttacactat 5941 aacgaagaga tatctataaa ctgtatgttt tctatatata tatatagtta tatctgcttg 6001 acttgcacga taagttccga tgatcttttc tgtcttgttt aatcactctt ttttcgcccc 6061 ctaaaaagta ttggccagtt gtggccggaa actattccca gcgcctaaag gaaacttgtt 6121 gcatatagag agtactaaat atatgtgtat ttatttcgat gtacttagac cggataacca 6181 aagcgtgtaa ataagtcaat ttaactgtgg cacaaactct acgatacata tgagaattta 6241 caaataatgt taaatgtgta ctatacgatt gaattaaatt ttatctaaat gtaaa