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LOCUS XM_017139482 6332 bp mRNA linear INV 09-DEC-2024 member 3 (Abca3), transcript variant X1, mRNA. ACCESSION XM_017139482 VERSION XM_017139482.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139482.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6332 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6332 /gene="Abca3" /note="ATP binding cassette subfamily A member 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055910" CDS 596..5788 /gene="Abca3" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X1" /protein_id="XP_016994971.2" /db_xref="GeneID:108055910" /translation="MAKVTNWDKFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVL VRTLVDTEQRGVKYYVEQNITDLSLLQHSLHRSSYLGKLIALIAPNRRSTGLSNFKFI VCYSPVNPVLKKLVDEAWQSLGMKDVCESENAAQLEVDTVSQSAFAGIQFDDAWANLT ESDPLPDDFHFALRFPSELRTATMAIANTWLTMRLFPTIDLTGPRNEADQDGGIPPGY LREGFLPLQHSLSMAYLRQKSGVESLPEIMMQRYPYPAYIYDPLLEGMSSIMSLIILL SFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILV KINWSEGVAVLTHANFTALVFFLIIYIIASICFCFMMATFFSRASTAAAVTGLIWFIA YIPYSFTINTYDDLSLTAKLGWSLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSV DDTLTLGAVMIMMLVSCVICMTICLYVEQVMPGSFGVPRPWNFPFTREFWCGEREYAG VEDIPNGHVEQRDPKAFETEPEGKHIGLQMRHLKKKFGDKMVVKGLSMNMFEDEITVL LGHNGAGKTTTISMLTGMFPPTSGTAILNGSDIRTNIEGARMSLGICPQHNVLFDEMS VSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALC GDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCD GELKCHGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKFIPGLKPECDIGAELSY QLPDSASSKFEEMFGQLEDQSDELHLNGYGVGITSMEEVFMKVGAEKDSTGNLKDQSE IMNGGSGFRGEDDNESVQSDGIFSENRRLLQGFQLLSNQWKAMLLKKFLYTWRNKLLL LIQNIMPVFFVVVTILIIETQGTFQELKPITMSLTQYPLAVTVLDRSAVANGTSTANL ANSYEKMALAHGSNYGLELTGKQLFEDYILELGKTIQVRINSRYLVAATINETMIIAW LNNQALHTAPLTVNMVHNAIADQLMGSNVRIEVTNAPLPYTTNTLLSQLSMGNNLGTQ LASNLCFCMCFVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFATYIVTA LIVVITIVCFQEPGLSSFAELGRYYLLLLLFGFAVLPFIYIMSLFFKEPATGFARVSI VNIFCGMALFIVVVVMSSELFDTKDTADILGWIFRIFPHFSLAMGLNKVYTNTATRNA CAKAGAIPPILLCELVPQCCNIKPFFAWEEPGVLPETVYMTVTGVVFFLIIIVLEFRL INELMFKIRQMLTKPPPPPPEGHLDDDVANERERIIHMSSDELVTKNLVLDRVTKYYG QFLAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMN SIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDK QTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIV LTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQAR LSAGFARNPDEQTVPAQMAQQDIDAVKEFVEHEYPHSILQEEYQGILTFYIPLTGVKW SRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEFAKYQREDTRANHRLSELRKLCKCLL ANEY" misc_feature <1034..5716 /gene="Abca3" /note="retinal-specific rim ABC transporter; Region: rim_protein; TIGR01257" /db_xref="CDD:130324" polyA_site 6332 /gene="Abca3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tccggcggcg ttagaagtac tacactacta ttattattgt tttatcacag tgaacagctg 61 tttaaccctg aaaataaaat cacagcaaaa gttaatagat tgtgcaaaac aaataaagga 121 aatatagcga gtgcgcactt tgcttaatga atcgaataaa ctatgaactt ttgggccctc 181 aatgacgcag cgagagataa aaactaataa cagcactata tttgtacata tattgtttat 241 gtgtcgcggt gtttgtgcgg aataatcatt agacggccgc acggtgggtt caaatcggtg 301 taatcgccgc agatttgccg tgacagtgca aatagaggtg tgcagaaagg gcaacgggtc 361 agcataaata attaattgca attgccgcga gtccattgcc aatcgattat gcagtaatgc 421 tcgacgccga tctaattttt atcactaagt gggcccgcac ttaatcgcac aaacaacaaa 481 cagaattgca atttcaatta ttgcccgcaa aacgtggaaa ggatcctaat tttaaccaat 541 tttaatgtcg agataatcta gaaaaagcga aaagccaatc aaacaaagct gcaaaatggc 601 taaggtcacg aactgggaca agtttgtgct gctgctgtgg aagaactgga cgctccaatg 661 gaaccacaag tggcagatgg tcatcgagct ggtgctgccg gcgatattct ccctgctcct 721 cgtcttggtc cgcaccctgg tcgatacgga gcagaggggg gtcaagtact atgtggagca 781 gaatataaca gatctcagtt tgttgcaaca ttcgttgcat agatcgtcct accttggcaa 841 gctcatagcg ctgattgcac ccaatcgacg gagcaccggc ttgtcaaact tcaagttcat 901 cgtgtgctac tcacccgtga atcctgtgct caagaaactg gtggacgagg cgtggcagag 961 cctgggaatg aaggatgtgt gcgagtcgga gaacgcggcc caactggagg tggacacggt 1021 cagtcagagc gcctttgccg gcatccagtt cgacgatgcg tgggccaatc tcacggagtc 1081 ggatccactg cccgatgatt ttcacttcgc cctgcgcttc ccctcggaac tgcgaacggc 1141 gacgatggcc attgcgaata cctggctaac gatgcgattg ttcccaacga ttgatctcac 1201 gggtccgcga aatgaggcgg atcaggatgg tggcataccg ccgggctatt tgagagaggg 1261 tttcctgcca ctgcagcaca gcctgtcgat ggcgtacctg aggcagaagt cgggcgtaga 1321 gagtctgccg gaaataatga tgcaacgcta tccgtatcca gcctacatct acgatcccct 1381 gctcgagggc atgtcctcga taatgtcgct gatcatactg ctgagcttca tctatccctg 1441 cacgtacatc accaagtaca tcaccgccga gaaggagaag cagctgaagg aggtgatgaa 1501 gatcatgggc ctgagcaatt ggctgcactg gacggcctgg tttgtgaagt ccttcatcat 1561 gctaacgata tcggccattc tgatagccat actggtcaag atcaattggt ccgaaggggt 1621 ggccgtgctg acgcatgcca atttcactgc gctcgtcttc ttcctgatca tctacatcat 1681 agcgagcatc tgtttctgct tcatgatggc caccttcttc tcgcgcgcca gcacagcggc 1741 cgccgtcacg ggtctgatat ggttcatcgc ctacataccc tactcgttta ccatcaacac 1801 ctacgacgac ctgagtttga cggccaaact gggctggagc ctgatctcga acacggccat 1861 gggcttcggc atcaagctga tcctgggctt cgagggcacc ggcgagggtc tgcagtggag 1921 caacttcttt acgcccgtct ccgtggacga cacactgacg ctgggcgccg tgatgatcat 1981 gatgctggtg tcgtgcgtca tctgcatgac catctgtctg tatgtggagc aagtgatgcc 2041 gggcagcttc ggtgtgccgc gtccctggaa ctttccgttt acccgcgagt tttggtgcgg 2101 cgaacgggag tacgcgggag tggaggacat acccaacggg catgtggagc agcgcgaccc 2161 caaggccttt gaaacggagc ccgagggcaa gcatatcggt ctgcagatgc ggcacttgaa 2221 gaagaagttt ggcgacaaga tggttgtgaa gggtctgtcc atgaatatgt tcgaagatga 2281 gattaccgtg ttactcgggc acaatggagc cggtaagaca acgaccatat cgatgttaac 2341 cggcatgttt ccaccgacga gcggcacggc cattctgaac ggcagcgata ttcgcaccaa 2401 tatcgaaggt gcccgcatgt cgctcggcat ttgtccgcag cacaatgtcc tcttcgacga 2461 gatgagtgtg tcgaatcaca tacgcttctt cagccgcatg aagggactgc gcggcaaggc 2521 ggtggagcag gaggtggcca agtatctgaa gatgatcgag ctggaggaca aggcgaatgt 2581 ggcctcgtcg aaactgtcgg gcggcatgaa gcgcaagctc tccgtctgct gtgccctctg 2641 cggcgacacc aaggtggtgc tgtgcgacga gcccagctcg ggcatggatc catcggccag 2701 gcgacagctg tgggatctgc tgcagcagga gaaggtcggt cgcaccctgc tgctgaccac 2761 gcacttcatg gacgaggccg atgtgctggg cgatcggatt gccatcatgt gcgacggcga 2821 gctcaagtgc cacggaacct ccttcttcct gaagaaacaa tacggatcgg gctaccgctt 2881 gatctgtgta aagcgagatg attgcgaaac gaacgaggtg accgccctgc tgaacaagtt 2941 tattcccggc ctgaagccgg agtgcgacat tggcgccgag ctgtcctatc aactgcccga 3001 tagcgcctcc tccaagttcg aggagatgtt cggccagctg gaggatcagt ccgacgaact 3061 gcatctgaat ggctacggcg tgggcatcac ctcgatggag gaggtgttta tgaaggtcgg 3121 cgccgagaag gacagcaccg gcaacctgaa ggaccagagc gagattatga acggcggcag 3181 cggcttccgc ggcgaggatg acaacgaatc tgtacagtcc gatggcatct tctcggagaa 3241 tcgccgcctg ctccagggat tccagctgct ctcgaaccaa tggaaggcca tgctgctcaa 3301 gaagttcctc tatacgtggc gcaacaagtt gctgctgctc atccagaaca ttatgcccgt 3361 cttctttgtg gtcgtgacca ttttgattat cgaaacgcag ggcactttcc aggaactgaa 3421 gcccataacc atgtcgttga ctcagtatcc actggccgtc accgttttgg atcgctccgc 3481 ggtggcgaat ggtacgtcca ccgcgaatct agccaatagt tatgagaaaa tggccctggc 3541 ccatggcagc aattacggtt tggaactgac gggcaagcag ctctttgagg actacatcct 3601 ggagctgggc aagacgatcc aggtgcgcat caactcgcgt tacctggtgg ccgccaccat 3661 caacgagacc atgatcattg cctggctaaa caatcaggct ctgcatacgg ctcccctgac 3721 cgtcaatatg gtgcacaatg ctattgccga tcagctgatg ggttcgaatg tgagaatcga 3781 ggtgaccaat gccccgctgc cgtacacgac caacactctg ctgtcgcagc taagcatggg 3841 caataatctg ggcacccagc tggcctccaa tctttgcttc tgcatgtgct tcgttagctc 3901 catctacatc ctgttcctga tcaaggagcg cgagtccagg gccaagctgc tgcagtttgt 3961 gggcggcgtg aaagtttgga ccttctggct gtcgcagttc atttgcgatt tcgccaccta 4021 cattgtgacc gctctgatcg tcgtgatcac gatcgtctgc ttccaggagc cggggctctc 4081 gagcttcgcg gaactgggcc gatactattt gctgctgctg ctcttcggct tcgccgttct 4141 gcccttcatc tacattatgt cgctgttctt caaggagccg gccaccgggt ttgctcgcgt 4201 ctccatcgtc aatatcttct gcggcatggc cctgttcatt gtcgtggtgg taatgtcctc 4261 ggagctattc gacaccaagg acacggccga catactgggc tggatattcc gcatctttcc 4321 gcacttttcg ctggccatgg gtctgaacaa ggtctacacg aacacggcca cgaggaatgc 4381 ctgcgccaag gccggagcga tcccacccat tctgctctgc gagctggtgc cacaatgctg 4441 caacatcaag ccgttcttcg cctgggagga gcctggcgtt ctgcccgaga ccgtctacat 4501 gactgtcacc ggcgtcgtct tcttcctcat catcattgtg ctggagttta gactcatcaa 4561 cgagctaatg ttcaagatcc gtcaaatgtt aactaaacca ccgccaccac cgccggaggg 4621 ccacttggat gacgatgtgg ccaacgaacg ggagcgcatt attcacatgt cctcggatga 4681 gctggtcacc aagaatctag tgctggatcg ggtcaccaag tactacggtc agttcctggc 4741 cgtcaatcag gtgtcgctct gcgtacagga agtcgaatgc tttgggctgc tgggcgtgaa 4801 cggagcaggc aagacaacga ccttcaagat gatgaccggc gacgagcgga tcagctcggg 4861 agccgcctac gtccaaggtc tgagcctgga atcgaacatg aacagcattt acaagatgat 4921 cggctactgt ccgcagttcg atgcgctgct ggacgatctg acgggtcgcg aggtgctgcg 4981 cattttctgc atgctgcgcg gcgtgcagga gtctcgcatt cgccagctct cggaggatct 5041 ggccaagtcg tttggcttca tgaagcacat cgacaagcag acgcacgcct atagtggcgg 5101 caataagcgt aagctgagca cggccattgc tgtgatcggc agtccgtccg tcatttacct 5161 ggatgagccc accacgggca tggatccggc ggccaggcgt cagctgtgga atatggtctg 5221 tcgcattcgt gactcgggca aatccattgt cctgacctcc cacagcatgg aggagtgcga 5281 ggcgctgtgc acgcgactgg ccattatggt gaatggtgaa ttcaagtgca ttggctccac 5341 gcagcacttg aagaacaagt tctccaaggg cctgatcctc aagatcaagg tgcgtcgcaa 5401 tctggaggcg ctgcggcagg cgcgtttgag cgccggcttt gctcgcaatc cggatgagca 5461 gacggtgccc gcccaaatgg cccagcagga catagatgcc gtcaaggagt ttgtggagca 5521 cgagtatcca cactccatac tgcaggagga gtaccagggc attttgacgt tctacattcc 5581 actgactggg gtgaaatggt cgcgcatctt tggcctgatg gagagcaatc gcgatcagct 5641 gaatgtggag gactactcgg tcagccagac gacgctggag gagatcttcc tggagttcgc 5701 caagtaccag cgcgaggata cgcgcgccaa tcaccgcctc tccgaactga ggaagctgtg 5761 caagtgcctg ctagcaaatg agtattgaac caactacctg aacggatccg atccgatcct 5821 gagatcttaa aacactcaca gataataatg ttttatacca aaaaagaaca acgccgatgc 5881 ctgaacagct aacaaatagt ttctaagctc gacctgacaa tagatagcag cgattatgcc 5941 ttttttcatt gtgatcatct agcaaaattt acactataac gaagagatat ctataaactg 6001 tatgttttct atatatatat atagttatat ctgcttgact tgcacgataa gttccgatga 6061 tcttttctgt cttgtttaat cactcttttt tcgcccccta aaaagtattg gccagttgtg 6121 gccggaaact attcccagcg cctaaaggaa acttgttgca tatagagagt actaaatata 6181 tgtgtattta tttcgatgta cttagaccgg ataaccaaag cgtgtaaata agtcaattta 6241 actgtggcac aaactctacg atacatatga gaatttacaa ataatgttaa atgtgtacta 6301 tacgattgaa ttaaatttta tctaaatgta aa