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LOCUS XM_017139436 5282 bp mRNA linear INV 09-DEC-2024 ABCA3 (LOC108055881), mRNA. ACCESSION XM_017139436 VERSION XM_017139436.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139436.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5282 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5282 /gene="LOC108055881" /note="phospholipid-transporting ATPase ABCA3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108055881" CDS 157..5139 /gene="LOC108055881" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3" /protein_id="XP_016994925.2" /db_xref="GeneID:108055881" /translation="MPATKGLLFKRYIRIELNLWRRTLFEIITMVIMVLVILLNPIAH SRRLLYTSTENENQQSIVSHKLQDISILTRMADSKREKTKYSLAYTPKTPFTMDVARS VAKTLELNSTVGYRIESEMQDQFDERTTLAGIVFHGASRGGTPLKLSISIRFPSEFRT IAPFLTEDRLWITRCSGRINPGRDQAKHYKQQDLYIREGFLQLQHQIFMEWYHRLRGD FVTTYPEPNVEVYNILLNAADEPCSVMSIAHMPTFLYNFIYLLPFLNIIRNVAAQVED GVMVHQWHYGYSFGRQWGFKFMVLFLRMLILGAVFVIMILAFWAFGGRDGEFSGYGAI GLICFIVVYTVEIVITGMVVAKLFANPTNAVLFALLLWLFMYAAFCIILERYWDIHKY YVFFILVAFCNCQMHFSMSLFRNCIDNPDIVQTIDFVVLFTSAISSALIYLLILLAVQ WRMPGTFLSRRIVNNRPRKQKDSDASIMYLGRAPSFQNFEFGDVGSEELMRLRHVSTT HRDSERKILKNISMRIYRGEVYVILGHIGSGKLTLLRILAGLKFPLRGSVSILGQPFQ PYGETRRMVDFRFDEHGLNKHLTVEQTIDYHVRLKLAPNEADRYEIERRKWLAILDQH VESRRIRIGKLSSGAMKLVALCCCLAGDTRIIILEEPTTQLTGREAQVFWSIVNAEKD NRAFIIATYSVGEAEHAADRIGILSLGVLEASGTPFFLRAKFSSSVDLVLIKKPHVPD QPITDYINQFMNNIEPENEIGDTLTYRLPVIYRPRLQKLLIHLEIDRKMLGIENVRVV SAELSDIYMKLVTSFRLQQQMIPDVTQTFKYQVVSHTQLTRQRMRAMFYKKMIHTAPN VWPIIMIFTSFVLIAIIARLSVLLDMPRVRQNTIHIGFMEAADVSKTIPDLKKCGYID IRATEKSSKKLPIAVSRTFNEKSFSCEKGSYRNDLKKKSEMRSYGAVEADGEQELNGY ISQDFFHSAPMMLNLLHNIILRLSYPEQQNIVALVENHPLPTQLSRKINLLDNKIAHI HAPLTIGCILPLTVSVFVIPLVEEQIYNVRFLQHMAGLGLKVFWGVNLFWDWFTFFIY SVIIVVIMSLMGIGGFGFTENAILLLLLCIFGLAALPLTYLVSMFVNKSLVRAFLVSV LLQGVSGLVLYMIYWDVANSNTIFFYGACMSPGFALLDGVSNVYTQCLEQEICSAKCQ AHISCTEDNMHEVVPNCRFGTHFKWAAPGILPAIVFMLVSALIFLMLIFWIELHRREK KFHTPRDLRKMRTATYPFDDGDVADVKLKIAEADNTKAKQSVFLVDQVEAKVPTAGKR INTVSFALNKYMSMGIFGPRNSGKSHLMRQLVGEEGFAFGEIYVRGLDFKYDLESIHT YMGYSPQHWGLLNELTPREHIRLLCMIRGVPEAKIGEKMHDLCLMLNMTGWMHRKCSL LTAEKRSKLKIALALVAYNKILVLDEPTCGMPATTRREIWNILRYIRYCGKTIIFATN DELECKILADFIILFQDSEMLAIGSLQYLRYKYSHGFYLEVRLIRDGATLAESEENLR KDVDNLAKFVNFLHNRSELVARLHNWFKFYVPVGQIVYSFLYGAMEKNKVRLNVSDYC IYQADMINVVAQVQETRAQLKHHLVQTEGPLPLDTTITKKGTQPRARGKK" misc_feature <910..1293 /gene="LOC108055881" /note="ABC-2 family transporter protein; Region: ABC2_membrane_3; pfam12698" /db_xref="CDD:463674" misc_feature <1696..5034 /gene="LOC108055881" /note="retinal-specific rim ABC transporter; Region: rim_protein; TIGR01257" /db_xref="CDD:130324" ORIGIN 1 tttgagaaca aagtactgtt ttgtgctcaa gcaaactaaa taatagattc aaaatcctct 61 gccgaacatc gtgttttaac accttttcac catctatttg gtgtgagagg tcaatatttc 121 tttggttttc ttatatacat accttgaaag tggaaaatgc cggccaccaa gggccttttg 181 ttcaagcgct atatccgaat cgagctgaat ttgtggcgac ggacgctctt cgagatcatc 241 accatggtga taatggtcct ggtgatcctg ctaaatccca tcgcccactc cagaaggctt 301 ctttacacga gcaccgagaa cgagaatcaa cagagcatcg tatcgcacaa gcttcaggat 361 ataagcatac taacacgaat ggccgactcg aagcgagaga agaccaagta cagcctggcc 421 tacacgccca aaacgccgtt caccatggac gtggccagga gcgtggccaa aaccctggaa 481 ctgaactcca ccgtgggcta taggatcgag tccgagatgc aggatcagtt cgacgaacga 541 accaccctgg cgggcatcgt attccatggg gccagtcgtg gcggtactcc cctaaagcta 601 tccatttcga ttcgcttccc cagcgagttc cgtaccatcg ctccgttcct caccgaggat 661 cgcctgtgga taacccgctg ctcgggtcgc attaatcccg gtcgcgatca ggccaaacac 721 tataaacagc aggatttgta tatacgcgag ggattcctgc agctgcagca tcagatcttc 781 atggagtggt accatcgatt gcgcggcgac tttgtcacca cctatccgga acccaatgtc 841 gaggtctaca acatcctgct gaacgccgcc gacgagccct gctccgtgat gagtatcgcc 901 cacatgccca cgttcttgta caactttatc taccttctgc ccttcctgaa tattatcagg 961 aacgtggctg cccaggtgga ggatggtgtg atggtgcatc agtggcatta cggttactcg 1021 tttggtcggc aatggggctt caagtttatg gtgctcttcc tgagaatgct cattttgggt 1081 gctgtatttg taataatgat tttggctttc tgggcgttcg gtggccggga cggggagttt 1141 tccggctatg gagcgatagg ccttatatgc ttcatcgtgg tctataccgt tgagatcgtt 1201 attacgggaa tggtggtggc caaactattt gccaatccca ccaacgcggt cctcttcgcc 1261 ctgcttttgt ggctcttcat gtacgcggca ttctgtatca ttctggaacg ctactgggac 1321 atccacaagt actatgtgtt cttcatcctg gtggccttct gcaactgcca gatgcacttt 1381 agcatgagcc tgttccggaa ctgcatcgat aatccggaca ttgtccaaac gattgatttc 1441 gtagtgctct tcacatcggc cattagttcg gccctgattt acttactgat tttgctggct 1501 gttcagtggc gaatgccggg cacatttctc agtcgacgga tagtgaacaa taggccgcga 1561 aagcaaaagg attcggatgc ctcgattatg tatttgggca gagcgccgag ctttcagaac 1621 tttgaatttg gggatgtggg cagcgaggag ctgatgcgat tgcgtcatgt cagcaccaca 1681 catcgcgact cggagcgaaa gatcctcaag aacatatcga tgcgaatcta tcgcggtgag 1741 gtctacgtca tactgggcca cattggttcc ggcaagctca cgctactcag aattttggcc 1801 ggcttgaagt tccccctgcg cggcagtgta tccattttgg gacagccctt tcaaccctac 1861 ggtgaaaccc gtcgcatggt ggacttccgt ttcgatgagc acggactcaa caagcacttg 1921 accgtggagc agaccatcga ctatcatgtt cggttaaaac tggcgcccaa cgaagcggat 1981 cgctacgaaa tcgagcgtcg caaatggttg gccatcctcg atcagcatgt cgagagtcgg 2041 cgaatacgca ttggaaagct aagttcgggc gccatgaaac tggtggccct gtgttgctgt 2101 ttagccggcg atacgaggat cataatcctg gaggagccga ccacccagct gacggggcgg 2161 gaggcgcagg tcttttggtc gattgtcaat gccgagaagg acaatcgggc cttcatcata 2221 gccacctaca gtgtgggcga ggcggagcat gccgccgatc gcatcggaat cctcagcctg 2281 ggcgtcctgg aggccagtgg cacacccttc tttctgcgcg ccaagttcag cagcagtgtg 2341 gatctggtcc tcatcaagaa gccacatgtc ccggatcagc ccattaccga ctatatcaat 2401 cagtttatga acaacatcga gccggaaaat gagatcggcg atacgctaac gtacagacta 2461 cccgtgattt atcgacccag gctgcagaaa ctattgatcc acctggaaat cgatcgcaag 2521 atgctgggca tcgagaatgt gagagtggtg agtgcggaac tctccgacat atatatgaag 2581 ctggtcacct cctttcgact gcagcagcag atgataccgg atgtcactca aactttcaag 2641 taccaggtgg tttcgcatac ccaactgact cgacaacgga tgcgggccat gttttacaag 2701 aaaatgatcc acacggcgcc gaatgtctgg ccgattatca tgatcttcac cagctttgtg 2761 ctgatcgcca tcatcgcccg cttgtcagtg ctgctcgata tgccgcgagt gcgccagaat 2821 acgatacaca ttggcttcat ggaggcagcc gatgtgtcca agactatacc ggatttaaag 2881 aagtgcggct acatcgacat tcgggcgacg gagaaaagct ccaagaaatt gcccatcgcc 2941 gtctcgagga ccttcaatga aaaatcgttt tcctgcgaga agggtagcta tcggaatgat 3001 ttgaagaaga aaagtgagat gaggagctac ggggccgtgg aggcggacgg ggagcaggag 3061 ctcaacggct atataagcca ggatttcttt cactcggctc ccatgatgct caatctgctg 3121 cacaatataa tactaagact ttcctatccg gagcaacaga acattgtggc cctggtggag 3181 aaccatccgc ttcccaccca gctgtcgcga aagattaatc tgctggacaa caagatcgcc 3241 cacatccatg cccccctgac tattggatgc atcctgccgc tgactgtttc ggtattcgtc 3301 atccctttgg tggaggagca gatctacaac gttcgattcc tgcaacatat ggccggactg 3361 ggcctgaagg tcttctgggg cgtcaatttg ttctgggact ggttcacctt cttcatctac 3421 tcggtgatca ttgtggtgat catgagcctg atgggcatcg gtggctttgg ctttaccgag 3481 aacgcgatcc tgctgctcct gctgtgcatc ttcgggctgg ccgccctgcc gctgacctat 3541 ctggtgtcca tgttcgtgaa caaatccctg gtgcgggcct ttctcgtctc cgtcctgctg 3601 cagggagttt cgggcctggt gctctacatg atctactggg atgtggccaa cagcaatacg 3661 atcttcttct acggcgcctg catgtcgccg ggattcgccc tgctggacgg cgtgagcaat 3721 gtgtacaccc agtgcctgga gcaggagatc tgcagtgcca agtgccaggc gcacatcagc 3781 tgcacggagg acaatatgca cgaggtggtg cccaattgca gatttggcac tcatttcaag 3841 tgggctgctc ctggtatttt acccgccatt gtctttatgc ttgtgtccgc tctaattttc 3901 ctgatgctga ttttctggat tgagctgcat cgcagggaaa agaagttcca cacacccaga 3961 gatctccgta aaatgaggac tgctacttat cccttcgacg atggcgatgt ggcggatgtg 4021 aagctaaaaa tcgcagaggc ggataatacg aaggccaagc aatcggtatt cttggtggat 4081 caggtggagg ccaaggttcc aactgccggc aaaaggatca acactgtctc ctttgcactg 4141 aacaagtaca tgagcatggg catctttggg ccccgtaact ccggcaagag ccacttgatg 4201 cggcagctgg tgggcgagga gggattcgcc ttcggcgaga tctatgtgcg gggcctggac 4261 ttcaagtacg atctggagag catccacacc tacatgggct acagtccgca gcactggggc 4321 ctcctgaacg agctgactcc gcgggagcac atccggctgt tgtgcatgat ccgcggtgtt 4381 cccgaggcga agatcggcga gaagatgcac gacttgtgcc tgatgctcaa catgaccggc 4441 tggatgcatc gcaaatgcag tttgctgacc gcggagaagc ggagcaagct taaaatcgct 4501 ctggcactgg tggcctacaa taagatcctc gttttggacg agcccacgtg cggcatgccg 4561 gccactacga ggcgagagat ctggaatatc ctccgttata tacgatattg cggcaagacc 4621 atcatattcg ccaccaacga tgagctcgag tgcaagatcc tagccgactt cattatcctg 4681 ttccaggaca gcgagatgct ggcgattggc agcctgcagt atttgcgtta caagtacagc 4741 catggtttct atctggaggt tcgtctgatc cgcgatggag ccaccctcgc cgagtcggag 4801 gagaatttgc gcaaggatgt ggataacctg gccaagtttg tcaacttttt gcacaacaga 4861 tctgaattgg tcgctcgtct gcacaattgg ttcaagttct acgtgcccgt gggccaaata 4921 gtttactcct ttctatatgg agccatggag aagaacaagg tgcgcctgaa cgtgagcgac 4981 tactgcattt accaggcgga catgatcaat gtggtggccc aggtccagga gacgcgggcc 5041 cagttgaagc accatctcgt ccagacggag ggtcccctgc ccctggacac cacgatcacc 5101 aaaaagggca cacagcccag ggccaggggc aaaaagtaac gcccgctgta tattttatac 5161 ccattatacg tttctaaacg gtgatgcaaa aattagtttc aggttttttt gtagctaaaa 5221 aactaaaacc aaaaaaaata ctattgtatt aggtgttgaa aaaacaaatc ttaaaattta 5281 aa