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LOCUS XM_017139347 1587 bp mRNA linear INV 09-DEC-2024 class 3 (Smyd3), mRNA. ACCESSION XM_017139347 VERSION XM_017139347.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139347.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1587 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1587 /gene="Smyd3" /note="SET and MYND domain containing, class 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055815" CDS 172..1548 /gene="Smyd3" /codon_start=1 /product="histone-lysine N-methyltransferase SMYD3" /protein_id="XP_016994836.2" /db_xref="GeneID:108055815" /translation="MASSSASKSAISAKSRSGKNAAPQIKRGQRILTEKPFAFVLKSQ YRLERCDNCLEATKVLKCSNCRYVSYCHRSCQMQAWAQHKHECPFLKKVHPRIVPDAA RMLCRLILRLEHGGDLIRGYYAEHGSRKFRDLMSHYAEIKNDPRRLEHLDSLHAVLSD MMAESPSTVPNKTELMSIYGRLITNGFNILDAEMNSIATAIYLGVSITDHSCQPNAVA TFEGNELHVHAIEDMECLDWSKVFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDAK ESKEMLAALCPNRNCGAGISVERTNCPRCDAGISPKLRNAFNEAMTLTRHNLEHMKDV AYLDVCKVCLDKQTGVFHPLNVWYVKTLDSAFEAAIEVGKWADALDYGQRLLPGFRKY HGPWNPLLGLLHMKLGKIQLYENHAKEALHHLEEAQRILTVTHGRDHRLLTEQLYVLI LQARHEAH" misc_feature 220..993 /gene="Smyd3" /note="SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; Region: SET; cl40432" /db_xref="CDD:394802" misc_feature order(220..222,784..801,823..831,898..909) /gene="Smyd3" /note="active site" /db_xref="CDD:380914" misc_feature order(220..222,787..801,904..906) /gene="Smyd3" /note="SAM binding site [polypeptide binding]; other site" /db_xref="CDD:380914" misc_feature 319..432 /gene="Smyd3" /note="MYND finger; Region: zf-MYND; pfam01753" /db_xref="CDD:460312" misc_feature <1108..1488 /gene="Smyd3" /note="FxSxx-COOH system tetratricopeptide repeat protein; Region: FxSxx_TPR; NF040586" /db_xref="CDD:468560" misc_feature <1288..1464 /gene="Smyd3" /note="Tetratricopeptide repeat; Region: TPR_12; pfam13424" /db_xref="CDD:315987" polyA_site 1587 /gene="Smyd3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttgttgcct gtgtttgcca gtcgatttgc gtaaattgtg tttgttttta gtgggctaaa 61 aatagagatc agatgccgca aaatattcaa aaagcattcg aaacaatatt tttgatcttc 121 aggtgtgcgc tcattttcag tcgtcagtga gacgggcccc caggcgaagc aatggccagt 181 tcctccgcat ccaaatccgc catctcagcg aaatcgagaa gcggaaagaa tgcggctccg 241 caaatcaaaa ggggtcagcg gatcctcacg gagaagccct ttgcctttgt cctgaagtcg 301 cagtatcgcc tggagcgctg cgacaattgc ctggaggcaa ccaaggtgct caagtgctcc 361 aactgccggt acgtgtccta ctgccatcgc tcctgccaga tgcaggcgtg ggcccagcac 421 aagcacgagt gccccttcct gaagaaagtg catccgcgga tcgttccgga tgcggccagg 481 atgctctgcc gcctgatcct gcgcctggag cacggcggcg atctcatccg gggctactac 541 gccgagcacg gctcccgcaa gttccgcgac ctcatgtccc actatgccga aatcaagaac 601 gatcccaggc gactggagca cctggactcg ctgcacgccg tgctcagcga catgatggcc 661 gagagtccca gcacggtgcc gaacaagacg gaactgatga gcatttacgg tcgtctcatc 721 accaatggct tcaatatcct agacgccgag atgaactcga ttgccacggc catttacctg 781 ggcgtctcga tcacggacca cagctgccag ccgaatgcgg tggccacctt cgagggcaac 841 gagctgcacg tgcacgcgat cgaggatatg gagtgtttgg actggtccaa ggtcttcatc 901 agctacatcg atctgctgaa tacgccggag cagcggcgtc tggacctcaa ggagcactac 961 tatttcctct gcgtctgcag caagtgcacg gacgccaagg agtccaagga gatgctggcc 1021 gccctgtgtc ccaatcgcaa ttgtggcgcc gggatcagtg tggagcgaac gaattgcccg 1081 cgttgcgatg ccgggatcag tcccaagctg aggaacgcgt tcaacgaggc gatgaccctc 1141 acgcggcaca atctggagca catgaaggac gtggcctatc tggatgtttg taaggtgtgc 1201 ctggataagc agaccggcgt ctttcatcct ttgaacgttt ggtatgtaaa gactttggac 1261 tcggcctttg aagccgccat cgaagtgggc aagtgggccg atgctttgga ctatggacaa 1321 cgcctgttgc cgggcttccg gaaataccac ggcccctgga atccgctgct cggcctgctg 1381 cacatgaagc tcggcaagat ccagctgtac gagaaccacg ccaaggaggc cctgcaccat 1441 ttggaggagg cccagcgcat cctgaccgtc acccatggcc gagatcaccg actgctcacc 1501 gagcagctgt acgttcttat tcttcaggcc agacacgagg cgcactagca ttgttattat 1561 tactttaaat aaagcttaag atagaga