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LOCUS XM_017139336 5202 bp mRNA linear INV 09-DEC-2024 (Hmt4-20), transcript variant X1, mRNA. ACCESSION XM_017139336 VERSION XM_017139336.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139336.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5202 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5202 /gene="Hmt4-20" /note="Histone methyltransferase 4-20; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108055810" CDS 725..4609 /gene="Hmt4-20" /codon_start=1 /product="histone-lysine N-methyltransferase Suv4-20 isoform X1" /protein_id="XP_016994825.2" /db_xref="GeneID:108055810" /translation="MVVGSNHTRRGETGSRFTNSSSSSGSNGGGSTASASSTTSATSS LATNSNSTSTATAAAALLSSMSHKGHGPPPSAPPSAHHQANQHHHDPHTPHYQQANQH PSSHHHQSNGSGGGGGASSGSVVSGLNGCNGSAVSRLSQSTGMSPRELSENDDLATSL ILDPHLGFQTHKMNIRFRPLKVDTQQLKAIVDDFIHTQNYDVAIQRIYDGPWIPRHLK NKNKIATKRLHDHIVRYLRVFDKDSGFAIEACYRYSLEEQRGAKISSTKRWSKNDKIE CLVGCIAELTEAEEAALLHSGKNDFSVMYSCRKNCAQLWLGPAAYINHDCRANCKFLA TGRDTACVKVLRDIEVGEEITCFYGEDFFGDSNRYCECETCERRGTGAFAGKDDGLML GLSMGLGLTTNGPGNNAGGYRLRETDNRINRIKSRANSTNSTSNSNSNTNDSTGTSES SSTNGLAVVSGGGAAAGGASVPAVPSQPSAGGSKELTVTAPVSLLEKKLPNVVVSPLT MKELRQKGMTKYDAEMIMANAAYQQQHHHQHHFHHHHHHHHHHHNHGQHASTGAEATA AVQQLAAMQKPGGAGGSVAGTGGGTAVAGGAGSEVNGNRSSSLRKSMRVNSTSSSIST ASTDEAVPVVVATSIPLPTKAPVVLVPRCKPAQMAIAAMQQRQQRQLRRSERQKEKLT DGESSDTSSDQQQKREQNQHQLAEEEQAHPVEKQEQQQEKRVTRNSAGRGGGGALVAR LATAHNNNIATTTTTNSSSSSKATTTITNCNNHNCNNSSRINHNSNLSGRLSVKSKKP APSEASSTPSSTSTSTENQQNQQQQQATRRSQSPAYKKNLLASFDPDLDQQKKAENEG PTPPVVKQKRSRRAAALAAAQSIHCEALGGFSTGSGGGGQRKRATQAAAGEATATSTI SNVEPLLKTPERRLKLTLRMKRSPILDEVIELGTSLSNGGRNASSSHRGGGLGGGGAG AAGEGAALNLTNSSSNGIEYEILRMEGISEHGNDDEEDEEEDDEQEEQEEDEEPEEEE PPPPPLKEEQQLLPSKKQRKKQRSRSRSSQRRSPAPSSSSVYGTPQKKRLRLIFGNES HTIDIPPAAGGAAEGEDLNSSGGGGDESFNVSYASSTSLTVNTSSSSTNSSSGGGGTG GEAVDSSSTVGATTIAAQSPSSTTSSSFQSACTSTTNSNSYFPNGKQGEDSYAMHYYQ LGKFSGTSSPGQGQAIVSSSSGGGGGGGAAAGFMSMPKHTFGTCALLAPTSFASLQNQ PPGISQQKGVVTTSTATSNAPNHHHNNHHGQK" misc_feature 1448..1873 /gene="Hmt4-20" /note="SET domain (including post-SET domain) found in Drosophila melanogaster suppressor of variegation 4-20 (Suv4-20) and similar proteins; Region: SET_Suv4-20; cd19186" /db_xref="CDD:380963" misc_feature order(1481..1483,1487..1492,1502..1507,1625..1630, 1682..1696,1796..1798,1832..1840) /gene="Hmt4-20" /note="putative SAM binding site; other site" /db_xref="CDD:380963" misc_feature order(1481..1483,1490..1492,1502..1507,1592..1594, 1622..1648,1658..1660,1667..1669,1679..1696,1718..1720, 1724..1726,1796..1798,1805..1813,1832..1840) /gene="Hmt4-20" /note="putative active site [active]" /db_xref="CDD:380963" misc_feature order(1700..1702,1832..1834,1838..1840,1847..1849) /gene="Hmt4-20" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:380963" ORIGIN 1 atcgatcgct cgacgttgtg ccacctctaa tgaatcggga ccaaatcgcg gaaaaaaaag 61 cagccgcatt ttgtaaatta agtccgaatt agaaccgatc cgacacagag gtcttttaca 121 agagaatcgc aaaatcgcaa cggaagcaga ggcaaagtgc agaaaagaaa acaagcggag 181 aagtgaagaa aaaggcatac atacagacgc acgtacacac gtctcgcctc gctcgtccgc 241 aggaatatat gtatccgtct gggtgtgcgt gtgttggtgt gcgctgcagc agcagcagct 301 tctaggcgtg aaagagaggg ggctagattc ccattccctt tccgactcgc gacttttgga 361 gcgtctcgcg agcgagagag agcgaaagag agagaggcag agccagagag cgagagccat 421 ggacggcgtt tggatgtttt tggggaacaa aggcgtcaag agctaaaatg atttggcaca 481 gcagcggcga tatattttgg atacgcagcc aaagccaaat ccaagccatc caaaacgata 541 accaattcca actccaatcg ctctgtgtat gtgtgtgtct cgacgaaaag ccgtggaaaa 601 agacgcacgc acacacacgc acacagaggc atcagcagca gcagcagaca aagcatcgtt 661 ttgcgggtgc gagcgagagg caatagcgcc ttagtgaata attcttttaa gactgtcctg 721 cagaatggtc gtcggctcga atcacacgcg gcgcggtgaa actggcagca gatttacaaa 781 cagcagcagc tccagtggct caaacggcgg tggttccacc gcttcggcca gcagcaccac 841 cagcgcaacg tcttcactag ccaccaattc caattccacg tcgacggcga ctgcggctgc 901 ggctctgttg tcgtccatgt cccacaaggg tcatggccca ccgccatccg ccccgccatc 961 tgcgcaccac caggcgaatc agcaccacca tgatcctcat accccccact atcagcaggc 1021 gaatcagcat cccagcagcc accaccatca gtcgaatggc agtggaggag gaggaggagc 1081 ctcatcagga tcggtggtca gtggactcaa tggctgcaac ggcagcgccg tcagccgcct 1141 ctcgcaatcc actgggatgt cgccgcgtga actctccgag aacgatgacc tggccacatc 1201 gctgatcctc gatccgcatt tgggtttcca gacccacaag atgaacatac gctttcgccc 1261 cttgaaggtg gacacgcagc agctgaaggc cattgtggat gactttattc acacgcaaaa 1321 ctacgatgtg gccattcagc ggatctacga tggtccctgg ataccgcgtc atctcaagaa 1381 caagaacaag atagccacca agcggctgca tgatcatatt gtccgctacc tgcgcgtttt 1441 cgacaaggac agtggctttg cgatcgaggc ctgctacaga tattcgctcg aggagcagcg 1501 cggcgccaag ataagctcga cgaagcgctg gtcgaagaac gacaagatcg agtgcctggt 1561 gggctgcata gctgagctga cggaggccga ggaggcggcc cttttgcatt cgggcaagaa 1621 tgacttttcc gtgatgtata gttgccgcaa aaattgcgcc caattgtggc tgggaccggc 1681 tgcctacatt aatcacgatt gtcgcgccaa ctgcaagttt ctggccaccg gcagggatac 1741 ggcatgcgtg aaagtcttgc gcgacatcga ggtgggcgag gagataacct gtttctatgg 1801 cgaggacttt ttcggcgact cgaatcgcta ttgcgagtgc gagacatgcg aacgccgcgg 1861 cacaggcgcc tttgcgggaa aggatgatgg tctaatgttg ggtcttagca tgggattagg 1921 cctaaccacc aatggaccgg gcaacaatgc cggtggctat cggctgcgcg agacggacaa 1981 tcggataaat cgcatcaaga gccgggccaa ttcgacgaac agcacgtcga acagtaatag 2041 caatacaaac gattccactg gcaccagcga gagtagcagc acaaatggat tggcggtggt 2101 ttctggagga ggagcagctg caggaggagc ttctgtgcct gcagtgccat cacagccatc 2161 agctggcgga agcaaggagc tcactgtaac tgcacccgtt tcgctgctcg aaaagaaact 2221 accgaatgtt gtcgtctccc cgctgaccat gaaggagctg cgccaaaagg gcatgaccaa 2281 gtacgatgcc gagatgataa tggccaatgc agcctaccag cagcagcacc atcatcagca 2341 tcatttccat caccaccatc atcatcatca ccatcaccac aatcatggcc agcatgcgag 2401 tacaggagcc gaggccacag cggctgttca gcaattggca gccatgcaaa agccaggagg 2461 agcaggagga tcagtagcag gaacaggagg aggaacagca gtggccggcg gagcgggctc 2521 cgaggttaat ggcaatcgct ccagcagtct gcgcaaatcg atgcgtgtga atagcaccag 2581 cagcagcatc tccacagcct ccacggatga ggcggtgccc gtggtggtgg ccactagtat 2641 tccgctgccc accaaggcgc ctgttgtcct ggtgccacgt tgcaagcccg cccagatggc 2701 cattgccgcc atgcaacagc gacagcagcg ccagctgaga cgcagtgaac gccagaagga 2761 gaagctcacg gatggcgaga gcagcgacac cagcagcgat cagcagcaga agagggagca 2821 gaatcagcat cagttggcgg aggaggagca ggcacatccg gtggagaagc aggagcagca 2881 gcaggagaag cgtgtgacgc gaaatagtgc gggaagagga ggaggaggag cattggtagc 2941 cagattagcc actgcccata acaataacat tgcaaccaca acaacaacaa acagcagcag 3001 cagcagcaaa gcaaccacaa cgattacaaa ttgtaataat cataattgta ataatagcag 3061 tagaattaat cataattcta atcttagcgg tagacttagt gttaaatcga agaagccagc 3121 accaagtgag gcctcgtcca caccctcatc cacatccaca tccacagaaa atcagcaaaa 3181 tcagcaacag cagcaggcaa cgcgtcgcag ccagagtccc gcctacaaga agaacctttt 3241 ggccagcttc gatcccgatt tggatcagca aaagaaagca gaaaacgaag gacccacacc 3301 gccggtggtc aaacagaagc gaagtcgcag ggcagccgcc ttggcagcgg cgcagagcat 3361 ccattgcgag gctctcggcg gattctcaac gggttccggg ggcggcgggc agcgcaagag 3421 ggcaacgcag gcggcggcag gagaagctac agccacctca accatcagta atgtggaacc 3481 cctgctaaag acaccagagc gccgattaaa gctaacgctg cgcatgaaac gttcacccat 3541 cctcgacgaa gttattgagc tcggcacgag tctaagcaac ggcggccgca atgcctcttc 3601 ctctcatcgc ggaggaggat taggaggcgg aggagctgga gcagcaggag agggagctgc 3661 gctaaatctc accaacagca gttcgaatgg cattgagtac gagattctgc gcatggaggg 3721 catttccgag catggcaacg atgatgagga ggatgaggag gaagacgatg agcaggagga 3781 gcaggaagaa gatgaagagc cagaggagga ggagccacca ccgccgcctc taaaagaaga 3841 gcaacagctg ctgcccagca agaagcagcg aaagaaacag cgcagccgta gcaggagcag 3901 ccaacgcaga tcgccggcgc cgagcagcag tagtgtatat ggcacgccgc aaaagaagcg 3961 actacgcttg atctttggca atgaatccca caccatagac attccaccag cagcaggagg 4021 agcagcagag ggagaggact tgaacagcag cggaggaggt ggtgatgagt ccttcaatgt 4081 ctcgtatgcc agcagcacca gtttgacggt gaatacctcc tccagcagta caaatagttc 4141 atcaggagga ggaggaaccg gaggagaggc agtggactcc tcctccacag tgggtgccac 4201 tacgattgca gcccaatcac cctcatccac gaccagcagc tcctttcaat cggcctgcac 4261 atcgacgacg aacagcaata gctattttcc gaatggcaag caaggcgagg attcgtatgc 4321 gatgcactac tatcagctgg gcaagttttc cgggacctcg agtcctggcc aaggacaggc 4381 cattgtgagc agcagcagtg gaggaggagg aggaggagga gcagctgctg gattcatgag 4441 catgcccaag cacactttcg gcacctgcgc tctcctggcg cccacaagtt ttgctagttt 4501 gcagaaccag ccgccgggga ttagccagca aaagggagtg gtaaccacat ccacagccac 4561 ttcgaatgcg ccgaatcatc atcataacaa ccatcatggc cagaaataac caacgactga 4621 tctccaagca aattgactaa gcacagctgc cattgccaag agaagaggat gagaaaccag 4681 gaggagaaac caggagaata tggaaggatc gctgcgctgc tggcgtcgtt gcctctgctg 4741 ctgctgctga tgatcctgtg aaacaacaca cacacttccc atagaagaac cctagtttaa 4801 gatcttagtc caagtagatc ctttttccta tatacccata tatatattca ggaagctaac 4861 tagaaaacag gctgacaaat cgaatccgga tatatatata tatacctgat tataaattga 4921 tttttttttc gctttctttt tctatttctc tcttttttct ctttgtgatt gctccccccg 4981 tttttctcta catttttatt ttgtgttcgc gttgcatgtt gtgcgtgtgt gttgtgtgtt 5041 gtttggtgtg cttttctttt tgcaggtgga aatttaaggc ttaggagtag gaaaaggtcg 5101 gaaaagtgcg acggcagcca gaggaggaac agcagcagca gcagcaacgc caccagcaaa 5161 acgaacagca gcagcggcag cagcaacatc ttcagcggca ac