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LOCUS XM_017139319 5654 bp mRNA linear INV 09-DEC-2024 1A (RhoGAP1A), transcript variant X1, mRNA. ACCESSION XM_017139319 VERSION XM_017139319.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139319.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5654 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5654 /gene="RhoGAP1A" /note="Rho GTPase activating protein at 1A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108055801" CDS 372..4616 /gene="RhoGAP1A" /codon_start=1 /product="active breakpoint cluster region-related protein isoform X1" /protein_id="XP_016994808.2" /db_xref="GeneID:108055801" /translation="MSVFDDFQRLWMQRFPQSSLSDAWEQDVRASLERHKLRILELTK ELEQETLYVEYLERLLSDVEKYRASGGDPTALFEAASGSGGTNNGGTTNGAPPGGGTT NVDKEFKSSLNLRESSTSSGGKDKDRLSLNTDNKYTTHTNAAGSGSGGGTAAGAGAGS TSGPLHSAPPTGKRIAELNFEREERDKDSGNEKDTNGALQQCITELAASIKAQPDNGA SSTGGGGAGGAGGSTDGGDKEKQPLRKSTSQYVTVIQVKEAKEKEGDDGGASDPQQSQ QPTPPSTFARYAEASAPPLSPSLTSYAAHVEAKKKMPPRPPPKNIRRVEPPTIPSQQQ QQLSSSPKRETPFVGSSMPLPSSSGGSLSSDSPGNSLERNIKPSDILRQKSSENLDSK YAANRKTTPELGKFVNVNNPELMEELGRKMVGKTDSLEQAKRNDSSPSGGGSLGRTAS TPGRSLTPGRTGVGASPTGSLNKTAKLAAADSSSTSSLEKKSRNCLQASDAEGGTGTN QRSVGSKESLASQGISEVIKSYESVSSLSSESAKAAATAAASQQSAADNEPYYDSVPL DNGDGEYVFIKPGRTGSSSSRDDLSTPGSSTLPLANPADPESPGRTSNYVNIDYFLQQ SNETRSSSLDSDGEYEGPPILRTISHDEQTTSQTTPGALRKNLVSAILVSGNARGAKI RSILSSIIQSETIYVECLNKMMQYKKAIHATLNTSQPVIKEEEENTIFFKIDELHDLH TAFLSDLKTIVSHEGGDVLIGEPFRRLADMFDLYSAFLHNYKNAIETVKKCSANNPQF KKIVSTIVVNLQTEQSLTLEDLLHKPVARVQINALVFNDLLRETPMAHPDHQPLRQAQ KIIQMFLNQFNVVNQRLPSESNRNLRRMVRNSFIVELVDGHRKLRHLFLFNDVIACAK YKALGRDRIDYELKWFIPLKEISIIEEADPAAELKESSPANISQVKRNLRSVRDQLAM EVANSGGGGVRSGDKYRRKLADLESQLVLATPNLVLRLANKANNKTMTFFLSSDFERT QWIDSITSLKQKCNLPGANTINSLEVTAFIVAMQKGMKTEMGSYLMRNTNDESLLVGD LHMAVQGLGGLEQAADLYICIEVDSYGHYFRKATTKMVCRSQTPLWNESFMLELEGSQ NVRILLYEAKERPLLRAKHILKLSLSWLTETTQPRTIKLSETLELGCSFRFVPGELCR ATTKPGALFGAKMSQVLKREKRDIPFIISACIREVERRGMLEVGCYRVSGSASDLAKL KKAFESDAYEAEQLLREVDIHSVTGILKTFLRELPEALFTDQLYPRFFDTFSAFSNNN ESTRINELLKVFEELPQVNKASINSILDHLIRVHEKETDNKMSLHNLAMVFGPTLLRP GQTQVKQKDPLAASTVDVMAQAGILYCFLQARIKKD" misc_feature 2424..2972 /gene="RhoGAP1A" /note="Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325" /db_xref="CDD:214619" misc_feature order(2433..2435,2445..2447,2736..2738,2823..2828, 2835..2840,2844..2849,2856..2861,2868..2873,2880..2882, 2958..2960,2970..2972) /gene="RhoGAP1A" /note="GTPase interaction site [polypeptide binding]; other site" /db_xref="CDD:238091" misc_feature 2952..3512 /gene="RhoGAP1A" /note="Breakpoint Cluster Region-related pleckstrin homology (PH) domain; Region: PH_BCR_arthropod; cd13368" /db_xref="CDD:270174" misc_feature 3636..>3833 /gene="RhoGAP1A" /note="C2 domain; Region: C2; cl14603" /db_xref="CDD:472691" misc_feature 4008..4595 /gene="RhoGAP1A" /note="GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to...; Region: RhoGAP; cl02570" /db_xref="CDD:470621" misc_feature order(4122..4124,4239..4241,4251..4253,4467..4469, 4476..4481,4569..4571) /gene="RhoGAP1A" /note="GTPase interaction site; other site" /db_xref="CDD:238090" misc_feature 4122..4124 /gene="RhoGAP1A" /note="catalytic residue [active]" /db_xref="CDD:238090" polyA_site 5654 /gene="RhoGAP1A" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atacttgctg ccatcgcaat cgccaacgaa atgaaatcgt tttttttgta atataaaatc 61 ggctgggata tttatgtgta gtgtatatat gttcaatatc caatcaatgt gaaagtgtat 121 cgtgaaaata gtgaatgaaa atcgtggcgg aaaatgaaac gcggtgaagg cgacaacgca 181 caactggtgc tcgttgttac ataaaaggca acctcgccct ctcttcgtca tcatctcgag 241 gaattatcat cattaatata tagcatcatc ggaaaccgca tctctggagt gaggaataag 301 tgcaggcaaa agcagaagaa tcgaaggagg aggaggaaaa gaaggagaag gaggagcacc 361 acctggtcac catgagcgtc ttcgacgact tccagcgctt gtggatgcag cgcttcccgc 421 agagctcgct atccgatgcc tgggaacagg acgtgcgggc gagtctcgag cggcacaagc 481 tgcgcatcct tgagctgacc aaggagctcg aacaggagac cctctatgtg gagtacctgg 541 agcgcctgct gtccgatgtg gagaagtatc gcgcctctgg cggggatccc acggccctct 601 tcgaggcggc cagcggaagt ggtggcacca acaacggtgg caccaccaat ggagcaccgc 661 caggcggagg caccaccaat gtggacaaag agtttaaatc cagtttaaat ctgcgcgagt 721 cctcgacgtc gtccggcggc aaggacaagg atcgcctgtc gctcaacacg gacaacaagt 781 acacaacaca cacgaatgcc gctggcagtg ggagtggcgg cggtacggca gcgggagcgg 841 gggcgggatc caccagcggt ccgcttcact ctgccccgcc gacgggcaaa cggatagcgg 901 agctgaattt cgagcgagag gagcgcgaca aggacagtgg caacgagaag gacaccaacg 961 gagctctgca gcagtgcatc acagagttgg cggcctcgat aaaagcccag ccggataatg 1021 gggcatcttc aacaggagga ggaggagctg gaggagcagg aggatcaacc gatggcggag 1081 ataaggagaa acaaccgctg cgcaaatcca cctcgcaata cgtcaccgtc atccaggtga 1141 aggaggccaa agagaaagag ggcgacgatg gaggagccag tgacccacag cagtcgcagc 1201 agcccacgcc gccctcaaca ttcgctcgct atgcggaggc cagtgctcct ccgctgtcgc 1261 cgtcgctcac ctcgtacgca gcccacgtgg aggccaaaaa gaaaatgcca cccagacctc 1321 cgccaaagaa cattcgccgc gtggagccgc ccaccattcc cagccagcag cagcagcagc 1381 tgtcgtcgtc gccaaaaaga gagactccct ttgtgggcag ctcgatgccg ctgcccagca 1441 gctccggcgg cagcctctcc tccgacagtc cgggcaattc gctggagcgc aacatcaagc 1501 cctcggatat tctgcgccag aagtcgtccg agaatctgga ttccaaatat gcggcgaatc 1561 gcaaaacaac accggagctg ggcaaatttg tgaatgtcaa taatcctgag ctaatggagg 1621 agctgggccg caagatggtg ggcaagacgg acagtctgga gcaggccaag cggaatgact 1681 cctcgccctc gggcggcggc agtctgggac gcactgcctc cacaccgggg cgatcattga 1741 caccgggacg aacgggcgtc ggggcctcgc ccacgggtag cctaaacaag accgccaaac 1801 tggcggcagc ggacagcagt tcgacgagca gtctggagaa gaagtcgcgc aactgcctgc 1861 aggccagcga tgcagagggt ggaacgggaa cgaatcagcg gagtgtgggc tccaaggagt 1921 cgctggcatc gcaaggcata tcagaggtga tcaagagcta cgagagtgtc tcctcgctga 1981 gttcggaaag cgccaaggcg gcggcgacgg cggcagcatc ccagcaatcg gcggcggaca 2041 acgagccgta ctacgatagc gtgccgctgg acaacggcga cggggagtac gtgttcatca 2101 agcccggtcg caccggttcc tcctccagtc gcgatgattt gtcaacgccc ggcagcagca 2161 ctctgccgct ggccaatccg gcggatcccg aatctccagg caggacctcc aactacgtca 2221 acatcgacta cttcctacag caaagcaatg agacgcggtc cagttcgctg gacagcgacg 2281 gggagtacga gggtccgccc atattgcgca ccatttccca cgacgagcag accacgtcac 2341 aaactacgcc gggagcactt cgcaagaact tagtttcagc gatacttgtt tctggaaatg 2401 cccgcggtgc caaaatacga tctatactca gctcaatcat tcagagcgag acgatctacg 2461 tggagtgcct caataaaatg atgcagtaca agaaggcgat ccacgctacc ctgaacacat 2521 cgcagcctgt gatcaaggag gaggaggaga acacgatttt cttcaagatc gacgagctcc 2581 acgatctgca caccgccttc ctgtccgacc tgaagacgat cgtttcccac gagggcggcg 2641 atgtgctgat cggtgagccc ttccgtcgac tggccgatat gttcgatctg tatagcgcct 2701 tcttgcacaa ctacaagaac gccatcgaga cggtgaagaa gtgcagtgcg aacaatccgc 2761 agttcaagaa gatcgtctcc accatagtgg tcaatctgca gacggagcaa tcgctgacgc 2821 tggaggattt gctgcacaag ccagtggctc gagtgcaaat aaatgccttg gtcttcaatg 2881 atttgctgcg cgaaacgccg atggcgcatc cggatcacca gccattgcgg caggcgcaaa 2941 agatcatcca gatgttcctg aatcaattca atgtcgtcaa tcagcggctg cccagcgaat 3001 cgaatcgaaa tctgcgacgc atggtccgta attcgttcat tgtggagctg gtcgatggcc 3061 atcgcaagtt gcggcatctc ttccttttca acgatgtgat cgcatgcgcc aagtacaagg 3121 cactgggcag ggatcgcatc gactatgagc tcaaatggtt cataccactg aaggagattt 3181 cgatcatcga ggaggcggat ccggcggccg aactgaagga atctagtcca gcgaacatat 3241 cgcaagtgaa gcgcaatttg cgctccgttc gagatcaatt ggccatggag gtggcgaaca 3301 gtggaggcgg cggtgtgcgt tccggcgaca agtatcgccg caagctggcc gatctggagt 3361 cacagcttgt gctggccacg cccaatttgg tgctccggct ggccaataag gcgaataaca 3421 agaccatgac cttcttcctc agctcggatt tcgagcggac gcagtggatc gactcgatca 3481 cgtcgctcaa gcaaaagtgc aacctgcccg gagccaatac gatcaattcg ctggaggtca 3541 ccgccttcat tgtggccatg cagaagggca tgaagactga aatgggctcg tatctgatgc 3601 gcaacaccaa cgacgagagc ctgctggtgg gagatctgca catggccgtc cagggattgg 3661 gcggcttgga gcaggcggcc gacctgtaca tctgcatcga ggtggactct tacggtcact 3721 atttccgcaa ggccaccacc aagatggtgt gtcgcagtca gacgccgttg tggaacgaga 3781 gctttatgct ggaactggag ggcagccaga atgtgcgcat tcttctctac gaggccaagg 3841 agcggccgct cctgagagcc aagcacatac tcaagttgag cctcagttgg ctgacagaaa 3901 ccacgcagcc gcgaacaatt aagcttagtg agaccctgga gctcggctgc agcttccggt 3961 ttgtgcccgg cgagctatgc cgcgccacca ctaagccagg agccctcttt ggtgccaaaa 4021 tgagtcaagt attaaaacgc gagaaacgcg acattccgtt catcatcagt gcctgcattc 4081 gtgaggtgga gcggcgggga atgctggagg ttggctgcta tcgcgtcagc ggttccgcct 4141 ccgatttggc caagctcaag aaggcatttg agtcggatgc ctatgaggcg gagcagctgc 4201 tgcgcgaagt ggacatccat tcggtcacgg gcattttgaa gaccttccta agagagctgc 4261 ccgaggcttt attcacggat cagctatatc cacgattctt cgacacattc agcgccttta 4321 gcaacaacaa cgaatccacg cgaatcaacg agctgctcaa agttttcgag gagctgccgc 4381 aggtcaacaa ggcctccatc aattcgattc tagatcatct gattagagtc cacgaaaagg 4441 agacggacaa caagatgtcg ctgcacaatc tggccatggt tttcgggccc accctgctga 4501 ggccgggaca aacgcaggtg aagcaaaagg atccgctggc cgcgagcacc gtcgatgtga 4561 tggcccaggc cgggatcctc tactgcttcc tgcaggcgcg catcaagaag gattaggact 4621 ttggaacagc cgtctgcaca gatatacata tggaatatat atatatataa acatatatat 4681 atatatgcac ataaattata tatttttttt acatagcaat agcggtaata cgaacgaaat 4741 tcgatggata gcctacgcat acaccacgcc cccacctgtc agccaccaca cgccccctgc 4801 acaaagtata cacacacaaa aaaaacagct aaacacctta aaaccttccg ggaaacgcct 4861 gaaaaaacac cttgaaaacg cttatagagc ttgaaaaata tcgaaagttt gctatttctt 4921 gatatttaat ttgaaaacat cgatattatc gaattaatat tatcgaaaat atcgataatt 4981 ttcaagttct aattgaaaaa aacacttaaa tacacctgcg ctgccaattg tatataccag 5041 aaaccgaaac tgcaactaaa agctgaagat atggatggat ctggcgagga atacggacgg 5101 aggaggcccc ttttcgggga tgtgaacaaa tctgctcaat ggcgggctca cacacacacg 5161 cacaacgcaa cacaacacaa cacacacaca tcagcaacac acacctggga tgatcaagtg 5221 tctaacacta attagctgct cctccgctta ctaaatatta ttcccatgta ttacagatat 5281 ttccgtagat ctgtagactg tatgctgctt tacctttaga ttgcgacctt tattagctta 5341 ctgcaactat tgcaaaaaaa aaaagagaaa gaaagaaggg aaagcagaaa attgcaaata 5401 ttttcaatat tacacgtata tatctagaga catatatacg caacctatat ataattaatt 5461 actactacta gtactataat ttactaaagt gaggtagcaa gtttttccgg ctgattgatc 5521 aatgattgat atacgatgta cgatgtatgt gtttgcttaa aaaattctgt tttttttttt 5581 cgtcttgttt tatattaatt atttaggttt ttatataaac agaagcgtaa aataaaatat 5641 attctattta gaaa