PREDICTED: Drosophila takahashii phenylalanine--tRNA ligase alpha

LOCUS       XM_017139261            1680 bp    mRNA    linear   INV 09-DEC-2024
            subunit (alpha-PheRS), mRNA.
ACCESSION   XM_017139261
VERSION     XM_017139261.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017139261.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1680
                     /gene="alpha-PheRS"
                     /note="phenylalanine--tRNA ligase alpha subunit; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins"
                     /db_xref="GeneID:108055767"
     CDS             89..1585
                     /gene="alpha-PheRS"
                     /codon_start=1
                     /product="phenylalanine--tRNA ligase alpha subunit"
                     /protein_id="XP_016994750.2"
                     /db_xref="GeneID:108055767"
                     /translation="MHPDLTERILQQLETADKVDTLDLAAQFGEDHQKIVGALKSIQA
                     HGDLVTAETATHKSLGLTDEGRAVVEHGSHEALVYAAIPAEGIAQAALMAAGGANAKV
                     GFSKAMSHGWILVDKSVSPPLVRRKVDAITDVVRQQLQQVAEGRGDQLPAKEVGDFKK
                     RKLLQETTTKSFVLSRGPEFATTLTKLETDLTVEMLASGLWDQLKFKAYNFDALGAPP
                     TRGHLHPLLKVRTEFRQIFLEMGFSEMPTNNYVESSFWNFDALYQPQQHPARDAHDTF
                     FVNHPARSHKFPQDYLERVKKVHSVGGYGSKGYGYDWKLEEAQKNLLRTHTTAVSARM
                     LYKLANQEGGFKAAKYFSIDKVFRNETLDATHLAEFHQVEGVIADVGLTLGDLIGTLY
                     EFFRKLGITQLEFKPAYNPYTEPSMEIFCYHPGLARWIEVGNSGVFRPEMLLPMGLPE
                     NVNVIAWGLSLERPTMIKYGINNIRDLVGPKVDLKMVEEGPICRLDHA"
     misc_feature    98..1576
                     /gene="alpha-PheRS"
                     /note="Probable phenylalanyl-tRNA synthetase alpha chain;
                     Region: PLN02853"
                     /db_xref="CDD:215458"
     polyA_site      1680
                     /gene="alpha-PheRS"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 caccccgata ggttgcgttg tggcaacaca cgagattcag attccggaat tgaatttacc
       61 attttgcccg tgaattaaac ccacagcgat gcatcccgat ctcacggagc gcattctcca
      121 gcagctggag accgccgaca aggtggacac cctggacctg gccgctcagt tcggcgagga
      181 ccaccagaag atcgtgggcg ccttgaagag cattcaggcg catggcgatt tggtcaccgc
      241 ggaaacggcc acccacaaga gcctgggcct cacggacgag ggtcgcgccg tcgtggagca
      301 cggcagtcat gaggcactgg tctacgccgc cattcccgcg gagggcatag cccaggctgc
      361 cctgatggcc gccggcggag caaacgccaa ggtgggcttc agcaaggcca tgtcccacgg
      421 ctggatactg gtggacaaga gcgtcagtcc gccgctggtg cggcgcaagg tggatgccat
      481 cacggatgtg gtgcgccagc agctgcagca ggtggccgag ggcaggggcg accagttgcc
      541 cgccaaggag gtgggcgact tcaagaagcg caagctcctc caggagacga ccaccaagag
      601 ttttgtcctc tcacgcggcc ccgagttcgc caccactctg accaaactgg agaccgatct
      661 caccgtggaa atgctcgcca gcggcctgtg ggatcagctc aagttcaagg cctacaattt
      721 cgatgccttg ggtgcgccgc caacgcgcgg acatctgcat ccgctgctca aggtgcgcac
      781 cgagttccgg cagatattcc tcgagatggg cttctccgag atgcccacca acaactacgt
      841 ggagtcgtcg ttctggaact tcgatgcgct ctatcagccg caacagcatc ccgctcgcga
      901 tgcccacgac acgttcttcg tcaatcatcc ggccaggagc cacaagttcc cgcaggacta
      961 tctggagcgg gtgaagaagg tccactcggt gggcggctac gggtcgaagg gctacggcta
     1021 cgactggaag ctggaggagg cgcagaagaa tctgctgcgc actcacacga cagccgtgag
     1081 cgccaggatg ctgtacaagc tggccaacca ggagggcggc ttcaaggcgg ccaagtactt
     1141 tagcatcgac aaggtgttcc gcaacgaaac gctggacgcc acccatctgg cggagttcca
     1201 tcaggtggag ggtgtgatcg ctgacgttgg cctgacgctg ggcgatctca ttggcacgct
     1261 gtacgagttc ttccgcaagc tgggcatcac gcagctggag tttaagcccg cctacaatcc
     1321 gtacacggag cccagcatgg agatcttctg ctatcacccc ggcctggccc ggtggatcga
     1381 ggtgggcaac tcgggcgtct tccggccgga gatgctgctg cccatgggcc tgccggagaa
     1441 cgtgaacgtc atcgcctggg gcctgtcgct ggagcggccc accatgatca agtacggcat
     1501 taataacatc cgggatttgg tcggacccaa ggtcgatctg aagatggtgg aggagggccc
     1561 aatctgccgg ctggaccacg cttaaagccg ccacagcccc aggatctgcg atcaaattgc
     1621 atttttttca caacacgaat gttccaaaaa atatttataa atacaatttc caccacagaa