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LOCUS XM_017139230 4111 bp mRNA linear INV 09-DEC-2024 (LOC108055746), transcript variant X1, mRNA. ACCESSION XM_017139230 VERSION XM_017139230.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139230.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4111 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4111 /gene="LOC108055746" /note="uncharacterized LOC108055746; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055746" CDS 578..3775 /gene="LOC108055746" /codon_start=1 /product="uncharacterized protein isoform X1" /protein_id="XP_016994719.2" /db_xref="GeneID:108055746" /translation="MSDIYYCSNSQMKKSRDADKSSAPLSATNTNANAANMAAADKKN NNNNCSNRNKEKSMQTNGKNWKGIVQSNPNPNGMGVGTTAQPPKVFHNTRCTRHHKPH HSHGNGTAASAGLGGLGGLGGGGGVPTSNGAALEATQQRERDRERERERDRDRERDRE REHHLHMHQHNHGLRRKSESVLSTDSDIRFTRRKLGDGQKCGCAVIAGFLIALLVAGV FVYVGYTYFRPEPLPDRVFRGRFMVLNDKWNMELANQNSMRFQHKARDYRERINLTLR RSDLREAFEGSEILALDGSEDNNNIVVHFNMIFDPYAGLVSSGDLLALFHEEMTQPAQ QRRHFANMTVDVASLSIKETTGLIEEPVMSSSPLGGHDETTEPVVTTTPAPPRRCSPL ELTYCRQLGYNITTYPNLLGHASYAQLAEDVIVFRELVDGECHREAYDFVCRLLQPPC DTHGSDLQPTPGQICREYCESFMAGCGGRLPQRFRQFFDCERFPESTGTQSCHQKPHC VSDMQSNVQSPRLCDGYADCPDLSDERSCAFCSPNALYCGRGRACVPRKARCDGKADC PDGADEKDCLSIAPLAADLLQPEPLVPYLSRFHAAGYAVFSEKGVVGKLCAEGLEGDA KLVVRQTVSESLCKSLGYESVEIFDVQNDTEQLSDYVRVLDPHAPEISFIRTHCPRRQ VLYVGCGELRCGVQSALFNAKQHLSLPKMSAPGDWPWLVALFREDIHVCDGTLISQDW VLTTEGCFQGQPRATWMAIVGAVRLSAKAPWTQRRRIIGMIKSPVEGSTAALVRLETS VSYSDHVRPICLPDALQRRLLQQPPAQRRSHVPVAERLEGQHLQQHRSRLAQENQQFF LIPSQEQLDSSTENREGVEGEEEQEQDDHFGAQAAASYMPKAEALHQELDAYPLPDHA PQVNYYSSSSTVTSSSLTARTKAATKAPLLPAVPAAQEQIWTNCNTLGWSRQRDHLQR VQLKMGDMAPCENVSIATVNSMCMEATYQKYDCTQEEYSGAPVQCLIPGTNQWALIGV SSWRIACGPTGVERPRMYDKIASNAAWIRETISAI" misc_feature 1283..>1516 /gene="LOC108055746" /note="SEA domain; Region: SEA; pfam01390" /db_xref="CDD:460188" misc_feature 1739..2095 /gene="LOC108055746" /note="CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain; Region: CRD_FZ; cd07066" /db_xref="CDD:143549" misc_feature order(1763..1765,1769..1774,1781..1789) /gene="LOC108055746" /note="putative Wnt binding site [polypeptide binding]; other site" /db_xref="CDD:143549" misc_feature <2096..>2335 /gene="LOC108055746" /note="Glucosidase II beta subunit-like; Region: PRKCSH-like; pfam12999" /db_xref="CDD:372423" misc_feature 2195..2302 /gene="LOC108055746" /note="Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about...; Region: LDLa; cd00112" /db_xref="CDD:238060" misc_feature order(2210..2212,2237..2239,2270..2275) /gene="LOC108055746" /note="putative binding surface [active]" /db_xref="CDD:238060" misc_feature order(2249..2251,2258..2260,2270..2272,2288..2293) /gene="LOC108055746" /note="calcium-binding site [ion binding]; other site" /db_xref="CDD:238060" misc_feature 2279..2293 /gene="LOC108055746" /note="D-X-S-D-E motif; other site" /db_xref="CDD:238060" misc_feature 2711..>3016 /gene="LOC108055746" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad...; Region: Tryp_SPc; cl21584" /db_xref="CDD:473915" polyA_site 4111 /gene="LOC108055746" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tatcatatca tatcgtatat agcttatatc tgaatataac cgaaagaaag gtgcgcgcat 61 gcgcatggaa agctgcaaaa gcgggaaaag cggcaaaagc gagtggtgtg ttctgcaaga 121 cggagcgtga agtgcggcat tgtttgcatt ttatttttca gtttgcattt tgttttgttt 181 ttgtttttgt attgtgtttg cctaaatatg cggataaata tgcggaaaac ctaatctggc 241 caaaaatcgt aacaataagc gacgtcaact ggctaagcat atcgattaca tcgagcgttt 301 gtacatatgt gacacttttc cgcggcgcaa aaacaggttg ccattacggc cattaactac 361 tggccataag ccacctaggg cacctggttc acctgttggc cagttcacct ggatccctgg 421 atcgcctctt ttccatttcg gatttttcaa taaagaaagc gcggagaaaa gctgataggt 481 ctgcgcgaaa ggagcgaatc cgcgacagcg gagcaggcgg agggcagcga tccagtccgc 541 tccaagatcc ctcatccaac cctgatcgag aaccaggatg tcggacatct actactgcag 601 caacagccag atgaaaaaat cgcgcgacgc ggataaatca tccgccccgt tgtcggccac 661 caataccaat gcaaatgctg ccaatatggc ggccgctgat aagaagaaca acaacaacaa 721 ctgcagcaat cgcaacaaag agaagagcat gcagacgaac ggtaaaaatt ggaagggcat 781 tgtccagagc aatcccaatc caaatggaat gggcgtgggc accaccgccc agccgccgaa 841 ggttttccac aacacccgat gcacgaggca ccacaaaccg caccacagtc acggcaatgg 901 aacggcagct tccgcgggat tgggaggatt gggtggttta ggaggcggcg gaggagtgcc 961 cacctccaat ggagcagcac tggaggccac acagcagcgg gaaagagaca gggaaaggga 1021 aagggaaaga gacagagatc gggaaagaga cagagagcgg gaacatcacc ttcacatgca 1081 ccagcacaac catggcctgc gcagaaaatc cgagtccgtc ctgtccaccg actcggatat 1141 ccgcttcacc cgccggaaac tgggcgatgg ccaaaagtgc ggatgcgccg tcatcgccgg 1201 attcctaatc gccctcctcg tcgccggagt ctttgtctat gtgggatata cctatttccg 1261 gcccgaaccg ctgccggatc gcgtctttcg cggccggttc atggtgctca acgacaagtg 1321 gaacatggag ctggccaacc agaactcgat gcggttccag cacaaggccc gcgactaccg 1381 ggagcgcatc aatctcaccc tgcggcgatc cgacctgcgg gaggccttcg agggcagcga 1441 gatcttggca ctggatggca gcgaggacaa caacaacata gtcgtgcact tcaacatgat 1501 cttcgatccg tacgccggtc tggtgagcag cggcgacctg ctggccctct tccacgagga 1561 gatgacccag ccggcgcagc agcggcgcca cttcgccaac atgaccgtgg acgtggcgag 1621 tctgagcatc aaggagacga ccgggctgat cgaggagccc gtgatgtcca gctccccgct 1681 gggcggtcac gacgagacca ccgagccggt ggtgaccacc accccggctc cgccgcgtcg 1741 ctgctcgccg ctggagctga cctactgccg ccagctgggc tacaacatca ccacctatcc 1801 gaatctcctc ggccacgcca gctacgccca gctggcggag gatgtgatcg tgttccggga 1861 actggtggac ggggagtgcc atcgcgaggc ctacgacttc gtgtgccgcc tgctccagcc 1921 gccctgcgac acccacggct ccgatctgca gcccactccc ggccagatct gccgcgagta 1981 ctgcgagtcc ttcatggccg gatgcggcgg tcggctgccg cagcgcttcc gccagttctt 2041 cgactgcgaa cgcttcccgg agtccacggg cacccagtcg tgccaccaga agccccactg 2101 cgtcagcgac atgcagtcca atgtccagag tccgcgtctc tgcgacggct atgccgactg 2161 ccctgacctc tccgacgagc gcagctgcgc cttctgctcg cccaacgccc tctactgtgg 2221 gcgtggccgg gcctgtgtgc cgcgcaaggc gcgatgcgac ggcaaggcgg actgcccgga 2281 tggcgccgac gagaaggatt gcttatccat agccccgctg gcggccgatc tgctgcagcc 2341 ggagcccctg gttccgtacc tctcccgctt ccatgccgcc ggctacgcgg tcttctccga 2401 aaagggggtg gtgggcaagc tgtgcgccga gggtctcgag ggcgatgcca agctggtggt 2461 gcgccaaacg gtctccgagt cgctgtgcaa gtccctgggc tacgaatccg tggagatctt 2521 cgatgtgcag aacgacacgg agcagctgag cgactacgtg cgtgttttgg atccccatgc 2581 ccccgagatc agcttcatcc ggacgcactg cccccggcgg caggtgctct acgtgggctg 2641 cggggagctg cgctgcggcg tccagtcggc gctcttcaat gccaagcagc atttgtcgct 2701 gcccaagatg tcggctccgg gggattggcc ctggctggtg gccctcttcc gcgaggacat 2761 ccacgtctgc gacggcacgt tgatctcgca ggactgggtc ctcaccaccg agggctgttt 2821 ccagggccag ccgcgtgcca cctggatggc catcgtgggc gccgtccgtc tgtctgccaa 2881 agctccctgg acgcagcggc gtcgcatcat cggcatgatc aagagtccgg tggagggctc 2941 cacggcggcc ctggttcgcc tggagacctc ggtcagctac tcggatcatg tgcgtcccat 3001 ttgcctgccg gatgctctgc agcgacgcct cctccagcag ccgccggccc aaaggagatc 3061 tcatgtcccg gtggccgagc gactggaggg acagcatctg cagcagcatc gcagtcgctt 3121 ggcccaggag aaccagcagt tcttcttgat tccctcgcag gagcagctgg acagctccac 3181 ggagaaccga gagggggtgg agggggagga ggaacaggaa caggatgatc actttggagc 3241 ccaggcagcc gcctcgtata tgcccaaggc ggaggctctg caccaggaac tggatgccta 3301 tcccctgccg gatcatgcgc cgcaggttaa ctactacagc tcctcctcca ccgtcacatc 3361 ctcctccttg accgcccgca caaaggccgc caccaaggcg ccccttctgc cggctgttcc 3421 ggctgcccag gagcagatct ggacgaactg caatacgctg ggttggtccc ggcagcggga 3481 tcacctgcag cgcgtccagc tgaagatggg cgacatggcg ccctgcgaga acgtgtccat 3541 cgccaccgtg aactccatgt gcatggaagc cacctaccag aagtacgact gcacgcaaga 3601 ggagtactcg ggagcacccg tccagtgcct gataccgggc acgaatcaat gggccctgat 3661 cggagtctcg tcctggcgga tcgcctgcgg accaacgggc gtggagcggc ccaggatgta 3721 cgacaagatc gcctcgaatg ccgcctggat ccgcgagacg atcagcgcga tatagtcggc 3781 atagtccccg ggggcggcga cacgcccctc cctcagcatt tgtgtagaaa acggaaccga 3841 actcactggg tattatgtgt gtagcaaagc aaagcgacca attaagcata tgtaactaac 3901 ctgctctaat gttactcgaa cctaacccta cgctaactat taactataac tattaaacgt 3961 cctttttttt gctgttttgt gtaatattta ttaactatgt tgtaattgta tgttaaacat 4021 gtcgaaaagg aagcaaattt agttgttagt tattacgttt agttgtttgt agaaagatat 4081 tgttgaataa aatgaaatcg tctaaagttt g