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LOCUS XM_017139227 4211 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017139227 VERSION XM_017139227.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139227.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4211 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4211 /gene="Smox" /note="Smad on X; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108055744" CDS 698..2137 /gene="Smox" /codon_start=1 /product="mothers against decapentaplegic homolog 3" /protein_id="XP_016994716.1" /db_xref="GeneID:108055744" /translation="MLPFTPQVVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKIKKNS QLEELERAISTQNCQTRCVTVPRSKPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNELK PLDHCEYAFHLRKEEICINPYHYKKIELSILVPKSLPTPPDSIVDYPLDNHTHQIPNN TDYNAAIIRSASLSPPQYMELGGTGSGPVSVSSSASSTPATAASASSSSSSSSAAYQQ QQQSFGQNMDSQSSVLSVGSSIPNTGTPPPGYMSEDGDPIDPNDNMNMSRLTPPADAA PVMYHEPAFWCSISYYELNTRVGETFHASQPSITVDGFTDPSNSERFCLGLLSNVNRN EVVEQTRRHIGKGVRLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGC NLKIFNNQEFAALLSQSVSQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWI ELHLNGPLQWLDRVLTQMGSPRLPCSSMS" misc_feature 716..1087 /gene="Smox" /note="N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs; Region: MH1_R-SMAD; cd10488" /db_xref="CDD:199812" misc_feature order(788..790,800..802,809..811,899..904,911..925, 932..934,989..991) /gene="Smox" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:199812" misc_feature order(881..883,1016..1018,1052..1054,1067..1069) /gene="Smox" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:199812" misc_feature 1529..2101 /gene="Smox" /note="C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3; Region: MH2_SMAD_2_3; cd10985" /db_xref="CDD:199826" misc_feature order(1580..1582,1595..1600,1604..1606,1637..1651, 1661..1663,1673..1675,1682..1684,1688..1693,1709..1714, 1718..1726,1733..1735,1940..1942,1949..1951,1958..1960, 1970..1972,1976..1978,1988..1996,2009..2011,2015..2017, 2027..2029,2042..2044,2048..2050,2054..2056,2060..2062, 2069..2074,2078..2083,2090..2095) /gene="Smox" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:199826" polyA_site 4211 /gene="Smox" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttcgcaggga ttttcggtat ctatatactg aaagtatatc agcaaaatcg cgaaacgcaa 61 aatattaaat tagtttattg gagcgcaatt cggagcaaag ggaactacga aattatagcg 121 aataaaaaca aaagcccaag aaacaaacaa caaggcggtg ttggagttga taaattaata 181 attaagaagt tctctgttct tgttgtgcgc ccctgtgtgt gtgtgtgttt gtgtgcctga 241 cttgcctgtc ggtgtccgga gactgtgcat tggtgtgcgt gtgcgtatag ctgtcacttt 301 ctggcgcgca cacaagatat atacacacag aaattcgaaa aagcggtggc caccacacgc 361 cccctttcca gaccaccacc ccccatcccg tcgtctggat gtgtgcgccc ggttccggtg 421 ccgtttggtt accgttaccg ttcccgtgcc cgtgcatctg gatccggagg ccgtgtgcgt 481 gcgagtgaga gggcgccaca cgtttaagga gccgccgcag gagcaagagc aggacaaccg 541 aggagctcga gttgccggta ccgttacaga tcagaaatac accagcggga agcaggagca 601 gcgttccagt tacagttaca gttccagtat tccaggcgat caagaggagt agcaaagcgg 661 aggagaaaga ggagcagaaa cccctgaaga ccctgagatg ttgccattca ccccgcaggt 721 ggtcaagcgt ttgttagcac tcaaaaaggg caacgaggac aacagcgtcg agggcaagtg 781 gtcggagaag gcggtcaaga atctggtcaa gaagatcaag aagaactcgc agctggagga 841 gctcgagcgg gccatctcca cgcagaactg ccagacgagg tgcgtgacgg tgccgcgcag 901 caagccagct cccgccggcg agcatctgcg caagggtctg ccgcacgtca tctactgccg 961 tttgtggcgc tggccggatc tccagtcgca gaatgaactg aagcccctcg accactgcga 1021 gtacgccttc catctgcgca aggaggagat ctgcatcaat ccctatcact acaagaagat 1081 cgagttgtcc atcctggtgc ccaagtcgct gcccactccg cccgactcca ttgtcgacta 1141 tccgctggac aaccacacgc accagatacc caacaacacc gactacaatg cggccatcat 1201 tcgcagcgcc tcgttgagtc cgccgcagta catggaattg ggcggtaccg gcagcggtcc 1261 cgtttccgta tcctcctcgg ccagctcgac gcccgcaact gccgcctccg cctcgtcgtc 1321 ctcctcctcc tcgtccgccg cctatcaaca gcaacagcag tcctttggcc aaaacatgga 1381 ctcccagtcg agtgtgctca gtgtgggcag cagcattccc aacaccggca ccccgccgcc 1441 cggctacatg agcgaggatg gcgaccccat cgatcccaac gacaacatga acatgtcgcg 1501 cctgacgccc cccgccgatg cagccccggt gatgtaccac gagccggcct tctggtgctc 1561 catctcctac tacgagctga atacgcgcgt cggcgagacc ttccacgcct cgcagccctc 1621 gatcacggtg gacggcttca ccgatccctc caactcggag cgcttctgcc tcggcctgct 1681 ctccaatgtg aatcgcaacg aggtcgtcga gcagacgcgt cgccacatcg gcaagggcgt 1741 acggctctac tatattggcg gcgaggtctt tgccgaatgc ctcagcgact cgtccatctt 1801 tgtccagagc cccaattgca atcagcggta cggttggcat ccggccaccg tgtgcaagat 1861 accgcctggg tgcaatctga agatcttcaa caaccaggag ttcgccgccc tgctgtcgca 1921 gtccgtgtcg cagggattcg aggccgtcta ccagctgacg cgcatgtgca ccatccgcat 1981 gtcgttcgtc aagggctggg gcgccgagta tcgccgccag acggtcacct cgacgccctg 2041 ctggatcgag ctgcacctta acgggccgct ccagtggctg gaccgcgtgc tcacgcagat 2101 gggatcgccg cggctgccgt gcagttccat gtcgtaagcg aaggttccgg ttttcaattt 2161 cccggagctt aaaaccagag aacctagtaa cactgatgaa cagaagagga atagaatgga 2221 gtatcctcaa gaattcgcgg taccattggc cacatgaaca gtgaaatcca agaaaccaaa 2281 aaaactagat gtacatcgat gttaaagcta atcaatggtc agtgttgctg gttagaagct 2341 ccacggggaa agcaaaatga gaatcggaat gggtttcagc gagaaaacca agaacaattc 2401 tgagagcaca tatgaaataa gttcaggcaa attatatacg agtacatact ggagcaaaat 2461 gaaaacaaat ggtagatgca agtcagatac agataaagat accgatagag atatatctat 2521 atacaaagag cacacactta catgtgggat atatatcttt acaagcatat atgagagaga 2581 acatgtattt ggcgttaaaa gtttaggact atatattgtg taggtggaaa cgtacgtgga 2641 gaatggcagt tttcgataag gagcaacaat ttttttaaaa aagttttaca tacaaaataa 2701 aagagagaaa ataaccaaac cgaccaggaa cacacaagcc ccttccgaaa gaagccccca 2761 gaatctgtgt gcgtagagtt ggtagcgcta gaagcgagca agtcaaaatt ctttgagaaa 2821 gaagcaaaac aattatatcg gtgatttgga acaaaaatgg atgagcaaaa caggaactgg 2881 gatttatcaa gcttgaagct tacacacaca gacacacaca cacacactct accatacatt 2941 gcaaatgtac ataagaccaa atatgatgaa attattcacg caggacctcc acttgatcga 3001 gtatgggatt acaagtacat atatctatgt atatccgttt gatgatggtt gttaaacgtt 3061 tcgattttcg cttagtacgt gtgtgttaca aaaatttgcc aactcttaaa atgcagtcag 3121 ctcttgttag ttgtaatgtc cgtaaaatgc gatcatatat cctatatgta aagcacttgc 3181 ccaacaaaat tttaatgccg caaaccaagt caggcccgtc tgaggacccg ttatgttcag 3241 aaatgcattt attgtgtacc aaacgagaga gagattcata tttctcatcg cccctcggac 3301 tcgaaccggt agctcaacca atatgcaata tggtttgccg gcgttgaccg gattttgctt 3361 ggcaagtgcg cgtttttctt gggtctagat cttaagtcta taaatgtaac gaaattcgct 3421 agcttatctt aaaatctaaa gagcctaaac ctgtttaagt tcgagttcta tttggtttta 3481 cttttgcaga ttattttaat cctccttttt ttttcgtctt tcgctgttaa aaccaaaaat 3541 aactgtaccg cccagtgttg aaaagagcat agtgcgcgac agccagtgtt ggctagcgca 3601 cttgcccgct gaccacggcg tagctttaat ttaagttttg tctattgttt cccccccttt 3661 gttgctttta agtttcgcac gtagtaatcc tgattggcaa tcaatcgaat aaacgaccgc 3721 gaacgagatt ttgttttgtt aattggctct aaatacggtt ctgaaccacc ccactggctt 3781 tgaattaaac aattgttttt gtatttccgg ctaaacccgc taataatgta atgtaatcct 3841 taagttatgc ctaacgaaac aaagcaaagc aaagaaggcg aacatgcgca gcaacagtca 3901 acagtcctgg gactccgatc gacaggatcg tgatcacaac cgcagaccag caacccccta 3961 cccgtaactt tatgaagtat aaatacaaat atatacatat atatatatct aatatgcaag 4021 catgcagata aagacaaaca gaattcgtat atacaaataa actcttatat tgaatggaaa 4081 gcgcatctca gatgttgtgg attggatttg agcaaatagg ggaaaggctt gcagttctta 4141 atcggatatt attataaaat aatttaatta ttttgtagtt tactttttaa taaatgttta 4201 ttttacctta a