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LOCUS XM_017139216 5407 bp mRNA linear INV 09-DEC-2024 domain (LOC108055740), mRNA. ACCESSION XM_017139216 VERSION XM_017139216.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139216.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5407 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5407 /gene="LOC108055740" /note="NCK-interacting protein with SH3 domain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055740" CDS 611..3088 /gene="LOC108055740" /codon_start=1 /product="NCK-interacting protein with SH3 domain" /protein_id="XP_016994705.2" /db_xref="GeneID:108055740" /translation="MATAEAAGGSSGPSGPGGEASDIGLGIGTGIEMLKALYDFQAVY PKTISFDEGEYFILYQTSARQRNWWQVVSMKGNIGFVPSNYVMKIKVEHDFLISFLNS SIESLEKCTDHEINGIMSKDELLDRLREKKHTMERLYAESSERDGDSSLSYSHSYSDK GSSHRHSHPHPTQSQTQLRQHSPPPSGSGGSQRLDMSKKSMSSPAVGSSCSQGKSQGM IESPSMGSMQFQGSSCTIQTPQQQQPLPAPPAPAPSPSPATPTASAASGSSSKAAAGG DVAQDNSITSEPSETTTTTTTTSEDVVTTYKDTSQQHKPPNGGSTASAASASISASAL RSSNGGNGNGQNGSTAALHQEELQPEEADSAPDKSEDASGCQANGDSADNSQALDSID SPSHRGQRGMSLGRIEEGGATGGGQLKVESSDVYQIVDALRRNTNLSFDLSCEALRVV LTSLEQLYNGAINPYLEAVAVHVTGKVATPKELLGITHDAKRLQYLFAQLADCKNDTE QRTWMLYEDEEDIIQFLEELVEILINADESISCYEMSCDQYQMFINLVQYYQMETRWS IKRLLLKTFTAACHLDYIIVDILLTSVLPLEIVEDMKTHFSNLDRFKQLVKMLTIIFS LGQPMPVNHQDYLGVHFASFLLEIVEGNNPELLVDMVIALILAFNQQFSEHTFNVIIE GMQNLPSAKVFTEKLLLLLNREDDPTRLLKHPNEHMNTVLRMFIDIFSHPDTAGMFYT NDIKVLIDIVVRQLSDLDAGSSTRPCYLELCRRILRNTNYQEHQHRKHDLMKIFTRIF CEETECSASDQQLVREIANEFPQLFKA" misc_feature 707..871 /gene="LOC108055740" /note="Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90); Region: SH3_SPIN90; cd11849" /db_xref="CDD:212783" misc_feature order(722..724,728..730,737..739,749..751,809..814, 854..856,860..865) /gene="LOC108055740" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212783" misc_feature 2573..2980 /gene="LOC108055740" /note="SPIN90/Ldb17, leucine-rich domain; Region: SPIN90_LRD; pfam09431" /db_xref="CDD:462796" polyA_site 5407 /gene="LOC108055740" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctaatgcaga gaaaaaataa caaaaaaaaa aaaataccga aataaaaaca agtgattgga 61 taattttgtt gtaaatttgt tgattccgcg gctgcaagtt ggtaatttga agaacacttg 121 ttcacctcat cgagtgatca ctgtatggcc ctatacgccc ctcccccgcc ggcgacacat 181 agacaggcga gaaaaggaga caaaaacaag tgcatcgcat ttggcgagag cagcagcagc 241 gcccatttcg catctcgcat catcgaaatt aatcaagtga atttcatttc acattcgcgt 301 gcggcggcca aagggaacaa caacaagtga tggcgcagcg gaactaacag tcgcccgaaa 361 aggacatcca gcacaaagga gagaggagcg ggggagcaga ggaagagaaa cacgcccatc 421 ggcaggacga aaagaagagt acgtatgcaa acgtccttgg ctcgtggacg tcagcagcgg 481 aagtggagga ggcagcagga cgaaggatag gtgacgtctg aaacaacaaa caacaggaac 541 aatacaacag cagcagcaac aacaacaaca accgacaaac gcaattacag taaaaggtgc 601 gcccaaaaag atggcgacag cagaggcagc agggggatcc agtggcccca gtggaccagg 661 aggagaagcc agtgacatcg gtctgggcat cggcacaggc atcgagatgc tgaaggcgct 721 gtacgacttc caggcggtct atcccaagac cattagcttc gatgagggcg agtacttcat 781 cctgtaccag acatccgccc gccagcgcaa ttggtggcaa gtggtcagca tgaagggcaa 841 cattggcttt gtgccctcca attacgtaat gaagattaag gtggagcacg acttcctcat 901 cagctttcta aactcctcca tagaatcgct ggaaaagtgc acggatcacg agatcaatgg 961 catcatgtcc aaggacgagc tgctggacag gctgcgcgag aagaagcaca ccatggagcg 1021 actctatgcg gagagctccg agcgcgacgg cgactcttcg ctgtcctact cgcacagcta 1081 cagcgacaag ggcagcagcc accggcactc gcatccccat cccacccagt cgcagacgca 1141 gctccgccag cacagtccgc cgccgagcgg cagcggtggc tcccagcggc tggacatgag 1201 caagaagagc atgtccagtc cggcggtggg ctcctcgtgc agtcagggca aaagtcaggg 1261 catgattgag tcgcccagca tgggcagcat gcagttccag ggcagcagct gcaccatcca 1321 gacgccgcag cagcagcagc cactcccggc accgccagca ccagctccat cgccctcgcc 1381 agccacgccc actgcatcgg cggcatcggg atcgtcgagc aaagcagccg ccggcggaga 1441 tgtggcgcag gacaacagca tcacttcgga gccctcggag acgacaacga ccacgacgac 1501 gaccagcgag gatgtggtca ccacatacaa ggatacaagc cagcagcaca agccgccgaa 1561 cggtggcagc actgcctctg ccgcctctgc gtccatttcc gcctcagctt tacggagtag 1621 caatggaggc aatgggaatg gtcagaacgg gagcacggcg gccctgcacc aggaggagct 1681 gcagccggag gaggcggaca gtgcgccgga caagtcggag gatgccagcg gctgccaggc 1741 gaacggcgat agtgcggaca atagccaggc gctggacagc atcgacagtc cgtcgcaccg 1801 cgggcagcgc ggaatgagtc tgggcaggat cgaggaggga ggggcaacgg gcggtgggca 1861 gctgaaggtc gagtcctcgg atgtctatca gattgtggac gcactgcggc ggaacaccaa 1921 cctcagcttc gatctatcct gcgaggcgtt gcgcgtggtg ctgaccagcc tggagcagct 1981 gtacaacggg gccatcaatc cgtatctgga ggcggtggcc gtccatgtca ccgggaaggt 2041 ggccacgccc aaggagctgc tgggcatcac gcacgacgcc aagcggctgc agtacctctt 2101 cgcccagctg gccgactgca agaacgacac ggagcagcgc acctggatgc tctacgagga 2161 cgaggaggat atcattcagt tcctcgagga gctcgtcgag attctgatca acgctgatga 2221 gagcatcagt tgctacgaga tgtcctgcga tcagtaccag atgttcatca atctggtgca 2281 gtactaccaa atggagacgc gctggtccat caagcggctg ctgctcaaga ccttcacggc 2341 cgcttgccat ctggactaca tcattgtgga catattgctg acctcggtgc tgcccctgga 2401 gattgtggag gacatgaaga cgcacttctc caatctggat cgcttcaagc agctggtcaa 2461 gatgctgacc atcatcttct cgctgggaca gcccatgccg gtcaatcatc aggactattt 2521 gggcgtccac tttgccagct tcctgctgga aatcgtcgag ggaaacaatc cggagctgtt 2581 ggtggacatg gttattgccc tgatactggc cttcaaccag cagtttagcg agcacacctt 2641 caatgtcatc atcgagggca tgcagaattt gccctcagcc aaggtgttca cggagaagct 2701 gctgctgctg ctcaatcgag aggatgatcc aacacgcttg ctaaagcatc ccaacgagca 2761 catgaacacg gtgctgcgga tgttcatcga catattcagc catccggaca cggcgggcat 2821 gttctacacg aacgacatca aggtgctcat cgacatagtg gttcgccagc tgtccgactt 2881 ggatgccggt agttcgacgc gaccctgcta cttggagctg tgccgacgca tcctgcgcaa 2941 cacgaactat caggagcacc agcaccgcaa gcacgatctc atgaagatct tcacgcgcat 3001 cttctgcgag gagaccgagt gcagtgcctc cgatcaacag ctggtgcggg agatagccaa 3061 cgagttcccg cagctgttca aggcttagag aacccaaacc aaaatacgga gggaaaccaa 3121 aattgtaaag cgttgctagt gaggcgagcc gttgaaagcg agccaaccgt aaattcgtag 3181 attattttaa attcgatcag tgaattgttg cgcatttgtt tagcgtctcg gtctcggaaa 3241 gccctcggag ctcagaattc agaacagatc gagggggaac tctacatata tcttatgaac 3301 atagtctgta agcaggacaa atgtactagt tgcatgtgga gtagatgcaa cctcatagag 3361 atgataccca atagcgtatc cgtaaacatc tagacaaaag aacgaaagaa ggtctaacac 3421 taaattatcc ccagtttagg atgatttcac taatttagaa tttagccagg gacaatttta 3481 gccagaaaca aagtcaaaaa tcagcctcac ttttaaattt ttgtagttat aattgccaat 3541 ttatttggaa ttcaaaattt tgacatataa aaccaagcgc aaaaaaaaga acgagcgaat 3601 gcgttcaaag tataagatat ttatagccta attatacacc tataatgaaa atatacattc 3661 atgacaaacg cgaatggaag gttaattgta atctacaagt aaacaattga tatattaacg 3721 atgtatgaca agaaaatatt tgcagctagc aaaaatccaa atcgattcga atgtaacgag 3781 catataatgt taaatttgtt tatataatct atgaggagga gaactaggcc gaacaggaaa 3841 tcattgacaa ttgttaaagc tcaaatacat attaattgga ggctaggcta ggcaggctgg 3901 aaattgaggc ggatcggaac gctctgcaga aagcattgaa agtaaggaca cccatttgca 3961 attttccctc gctgaaagac acacgaaaac acacgcagtg gcgtatgcat tttggaatct 4021 gtatgatctg tattcataag ttttattgct cagaaatgat aggtttttaa aatatatatt 4081 ttttttaatc ccggggcata cgccactttt tctctatatc tctctcacta tttctcaagc 4141 taaataacaa aacaaatttc ccagcggaac ccttaaatta tatttattta cggtaggaaa 4201 tattaatatt attttcaagc agttatcttg catttgtacg ttatttagtg aatagttttc 4261 aagtgacata ggatcctcat gtatttgtat ttattaaggg tagatccgct gggaattgtt 4321 atatctatct ctatataaac acatacactc atcgacaagc ataaatagtt ttagacagat 4381 ttcattggcc tttctttgtt attgttgcgt cacagttatc caacttaaaa gaaaaaaaaa 4441 acaacgaaat taaaataaaa agtaaaagga aggaaaatga acattttaac cccctgcagc 4501 catgagataa tgattttagg ggcggaaacc acattggatc attgttttcg attggctttt 4561 gttacctgct atcattccaa tttaataaaa gccactataa cgaagaagca ataaactttt 4621 taagttgtca cgcacgccag ttaacaaata gtggctttgg aaacactgcc tgtagcatag 4681 gagggaattt aaaaatcgct tgagcccgga ttataataat agttgatgta actacgaaat 4741 tgtcgatttc gaaataatat ccaatgtgat tttcccctta gacaaatgcg atctactttc 4801 ttttttacgt tggagaggtc ctcattgtta tattgtttag gcaaccaatt ttaatcaaaa 4861 acgcatgagc atgatattaa aacattcatc taggaatatc tattcgaaca tttcccattg 4921 gatcttattt taaaactgag aatttgaaaa gctgctgatg catgaacgaa tttaatttgc 4981 caagtttcat aacgaaaagg gatatttaca aacagttata aactaaacta aaactaaatc 5041 agaaactaaa accaatatta accacaaatt gtacctttcg attttgaatt taaatttaaa 5101 tttaaataac actctcggta attgcaataa taaaacaaaa caaaaacaat gaggcaaaga 5161 agtacacgaa tctgcaataa aaacaattaa tgtttaaaag tactacgtta acaagaacaa 5221 acacgtttta cgtcaagcaa atagagataa tttaaaagat tgttatcctc tcatttttaa 5281 cacaaaacag agatcctaaa aacagaaaac caaacaaatt acaagtttta ataagcgcat 5341 tcaaaatgta acgaaacgaa attgcaattg taagaaacga aaataataaa taaaacaatt 5401 caagtaa