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LOCUS XM_017139215 3488 bp mRNA linear INV 09-DEC-2024 X4, mRNA. ACCESSION XM_017139215 VERSION XM_017139215.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139215.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3488 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3488 /gene="sdt" /note="stardust; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055739" CDS 179..2821 /gene="sdt" /codon_start=1 /product="protein PALS1 isoform X4" /protein_id="XP_016994704.2" /db_xref="GeneID:108055739" /translation="MVVSTLHITLENNGNVAGGQQPLATAAAAAAAVGAATSPTKFAV LSAQQLQLQHQQQNEKENHMNNNNNNNSDYCDMNGNGIGRSVGPGSISPHSPEQYAGS PASVTATPQRTASALRRGIQIQRSSTRLRQQQEQLRRRREEEERIAQQNEFLRNSLRG SRKLKALQDTATPPGKAVAQQQQQQQATQATQVVGVENEAYLPDDDQPTQVEQIDGYG ELIAALTRLQSQLSKSGLSTLAGRVSAAHSVLAGASVAHVLAARTAVLQRRRSRHSGP LHHSALGLQKDIVELLTQSNTAAAIELGNLLTSHEMEGLLLAHDRIANHTDGTPSPTP TPTPAIPGGGLGLISGHSSPVAGPKRNLGMVVPPPVVPPPLAQRGAMPLPRGESPPPP QLPMPMSNLPMSACFGTLNDQNDNIRIIQIEKSTEPLGATVRNEGEAVVIGRIVRGGA AEKSGLLHEGDEILEVNGQELRGKTVNEVCALLGAMQGTLTFLIVPAGSPPIHGGVMG GGGGVVAGQTLAGLGGAHRDTAVLHVRAHFDYDPEDDLYIPCRELGISFQKGDVLHVI SREDPNWWQAYREGEEDQTLAGLIPSQSFQHQRETMKLAIAEEAGLARSRGKDGSGSK GATLLCARKGRKKKKKASSEAGYPLYATTAPDETDPEEILTYEEVALYYPRATHKRPI VLIGPPNIGRHELRQRLMADSERFSAAVPHTSRARREGEVPGVDYHFITRQAFEADIL ARRFVEHGEYEKAYYGTSLEAIRTVVASGKICVLNLHPQSLKLLRASDLKPYVVLVAP PSLDKLRQKKLRNGEPFKEEELKDIIATARDMEARWGHLFDMIIINNDTERAYHQLLA EINSLEREPQWVPAQWVHNNRDES" misc_feature 1022..1153 /gene="sdt" /note="L27 domain; Region: L27; pfam02828" /db_xref="CDD:460717" misc_feature 1430..1666 /gene="sdt" /note="PDZ domain of membrane palmitoylated protein 5 (MPP5), Drosophila Stardust, and related domains; Region: PDZ_MPP5-like; cd06798" /db_xref="CDD:467259" misc_feature order(1460..1480,1505..1507,1514..1516,1604..1606, 1616..1618,1625..1630) /gene="sdt" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467259" misc_feature 1775..1960 /gene="sdt" /note="Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5); Region: SH3_MPP5; cd12036" /db_xref="CDD:212969" misc_feature order(1781..1783,1853..1858) /gene="sdt" /note="GuK domain interface [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(1790..1792,1796..1798,1805..1807,1838..1840, 1892..1897,1949..1951,1955..1960) /gene="sdt" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(2234..2236,2252..2254,2294..2296,2321..2323, 2330..2332,2357..2359,2426..2428,2441..2443) /gene="sdt" /note="catalytic site [active]" /db_xref="CDD:238026" misc_feature order(2234..2236,2252..2254) /gene="sdt" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:238026" misc_feature 2249..2764 /gene="sdt" /note="Guanylate kinase homologues; Region: GuKc; smart00072" /db_xref="CDD:214504" polyA_site 3488 /gene="sdt" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agttgttttt ctacgcgttc tgcgatcggc cgcaattttt gttgattttt ttccacccat 61 ttatatattt ttttgtcgta tttctgttcg ggccaagtgc gtgacaaaga accgataacc 121 gattagataa ggccatatgc atatgagaga caaagatcga tgaaagtgct attcgaaaat 181 ggtcgtgtcc actttgcaca taacgctgga gaacaacggc aatgttgccg gcgggcagca 241 accgttggca actgctgctg ctgctgctgc tgctgtcgga gcagcaacat cgcccaccaa 301 gtttgccgtc ctgtccgccc agcagttgca attgcaacac cagcaacaga acgagaagga 361 gaaccacatg aacaataata ataataataa cagcgactat tgtgatatga atggcaatgg 421 aattggtcgt agtgttggac cgggatctat atctccgcat tctcccgagc aatatgccgg 481 ctcacctgcc tcagtcactg ccacgcctca gcgcaccgcc tccgccctgc gtcgcggcat 541 ccaaatccag cgatcctcga cgcgtttgcg acaacaacag gagcaactgc gccgacgacg 601 cgaggaggag gagcgcatag cgcagcagaa tgagttcctg cggaacagtc tgcgtggctc 661 ccggaagctg aaggctctcc aggacacggc cacgcccccc ggcaaggcgg tggcccaaca 721 gcagcagcag cagcaggcaa cgcaggccac ccaggtggtg ggcgtggaga atgaggccta 781 tctgcccgac gacgaccagc cgacgcaggt ggagcagatc gatggctatg gcgagctgat 841 agccgccctc acgcgcctgc agagccagct gagcaagagc ggactgagca ccctggcggg 901 tcgcgtttcg gccgcccaca gtgtgctggc cggcgccagt gtggcccatg tcctggccgc 961 ccgcacagcc gtcctgcagc gacggcgttc ccgccactcc ggtcccctgc accacagcgc 1021 cctcggtctg cagaaggaca ttgtggagct gctgacccag tcgaatacgg cggcggccat 1081 cgagctgggc aacctgctga ccagccacga aatggagggt ctgctgctgg cccacgatcg 1141 catagccaat cacacggacg gcacaccatc gcccacgccc acgcccacgc cggcgatccc 1201 tggaggagga ttaggattga tcagtggtca cagcagtccg gtggcgggac ccaaaaggaa 1261 cctgggaatg gtggtgccgc cgcccgtcgt tccaccgccg ctggcgcaac gcggagcaat 1321 gccactgcca cgcggggagt cgccaccgcc tccgcaactg cccatgccca tgtccaatct 1381 gccgatgagc gcgtgtttcg gcacgctgaa cgatcagaac gacaacatac ggatcataca 1441 gatcgagaag tcgacggagc cgctgggcgc caccgttcgc aacgagggcg aggcggtggt 1501 catcgggcgg attgtgcgcg gcggggcggc cgagaagtcg ggactgctgc acgagggcga 1561 cgagatcctg gaggtgaatg gccaggaact caggggcaag acggtgaacg aggtgtgcgc 1621 gctgttggga gccatgcagg gcaccctgac cttcttgatt gtgcccgccg gcagtccgcc 1681 catccatgga ggagtgatgg gcggcggagg aggagtcgtc gcgggacaaa cgctcgccgg 1741 attgggcgga gctcatcgcg ataccgccgt gctgcatgtg cgggcgcact tcgactacga 1801 tcccgaggac gatctgtata ttccgtgccg ggagctgggc atcagcttcc agaagggcga 1861 tgtgctgcac gtgatcagcc gcgaggatcc caactggtgg caggcgtacc gcgagggcga 1921 ggaggaccag acgctggccg gtctcattcc tagtcagtcg ttccagcatc agcgcgagac 1981 gatgaagctg gccattgccg aggaggcggg actggcgcga tcgcggggca aggacggttc 2041 gggcagcaag ggggccacgc tcctctgtgc gcgcaagggt cgcaagaaga agaagaaggc 2101 cagctccgag gcggggtatc ccctttacgc caccacggcg cccgatgaaa cggatcccga 2161 ggagatactc acctacgagg aggtggccct ctactatccg cgcgccaccc acaagcggcc 2221 catcgtcctc atcggcccgc ccaacattgg cagacacgag ctgcgccaac gcctgatggc 2281 cgactcggag cgattctctg ccgcagtgcc acacacgtca cgagcccgca gagagggcga 2341 agtgcccggc gtggattacc actttatcac gcgccaggcc ttcgaggcgg atattttggc 2401 gcgtcgcttt gtggagcacg gtgaatacga gaaggcctac tacggcacat cactggaggc 2461 catacgcacg gtggtggcca gcggcaagat ctgtgtgctc aacctgcatc cgcagagcct 2521 caagctgctg cgcgcctccg acctcaagcc gtatgtggtg ctggtggcgc cgcccagtct 2581 ggacaagctg cgtcagaaga agctgcgcaa cggcgaaccc ttcaaggagg aagagctcaa 2641 agacatcatt gccacggcca gggatatgga ggcccgttgg ggtcacctat tcgacatgat 2701 catcatcaac aacgacacgg agcgcgccta tcaccagctg ctggccgaga tcaactcgct 2761 ggaacgggag ccgcagtggg tgcccgccca gtgggtgcac aacaatcgcg acgagtcata 2821 atggggtcgc cagaacccca acccacccaa ttaccaccac ccaatccaga aataggaacc 2881 caaaacaact ctttgtaaat acaattttca attgagccat gaagcggagt gcaggatcga 2941 ttccagtcca gtagttcggt ttgcctgccg atgcgattaa caacgccccc taccacaacc 3001 cctccaatat tatatataca catatatata tatatatatt tatatactat tcgttgcgta 3061 tgtgcatttt agtcttagcg aaaataattg tttttaatcg tgtgtgtcgc cctgttttga 3121 aagcattccc ataatacaaa acccctttat gtatgttcac aaaatttgtt gttcgctgaa 3181 ccattttgcg gggctgccac agagaaatcg agtagctgaa gagcctgcta aattgtatat 3241 tatgattttt ccatcgtttg tgatttctgt ggcattgccg ttttgtacac ctatattata 3301 cccatttttt ttttgtacga ctaccactaa cttatattgt aaacgtattt ttttgtttaa 3361 actaagcttg agcacttcct taatttcaag gggcaaattg aaattgtaaa ataacgaatc 3421 agcgctggga ggaaggccag aatcgatatg acatagtacc ctagaaccca ataaaatgtg 3481 taataata