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LOCUS XM_017139214 3656 bp mRNA linear INV 09-DEC-2024 X5, mRNA. ACCESSION XM_017139214 VERSION XM_017139214.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139214.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3656 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3656 /gene="sdt" /note="stardust; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055739" CDS 347..2989 /gene="sdt" /codon_start=1 /product="protein PALS1 isoform X4" /protein_id="XP_016994703.2" /db_xref="GeneID:108055739" /translation="MVVSTLHITLENNGNVAGGQQPLATAAAAAAAVGAATSPTKFAV LSAQQLQLQHQQQNEKENHMNNNNNNNSDYCDMNGNGIGRSVGPGSISPHSPEQYAGS PASVTATPQRTASALRRGIQIQRSSTRLRQQQEQLRRRREEEERIAQQNEFLRNSLRG SRKLKALQDTATPPGKAVAQQQQQQQATQATQVVGVENEAYLPDDDQPTQVEQIDGYG ELIAALTRLQSQLSKSGLSTLAGRVSAAHSVLAGASVAHVLAARTAVLQRRRSRHSGP LHHSALGLQKDIVELLTQSNTAAAIELGNLLTSHEMEGLLLAHDRIANHTDGTPSPTP TPTPAIPGGGLGLISGHSSPVAGPKRNLGMVVPPPVVPPPLAQRGAMPLPRGESPPPP QLPMPMSNLPMSACFGTLNDQNDNIRIIQIEKSTEPLGATVRNEGEAVVIGRIVRGGA AEKSGLLHEGDEILEVNGQELRGKTVNEVCALLGAMQGTLTFLIVPAGSPPIHGGVMG GGGGVVAGQTLAGLGGAHRDTAVLHVRAHFDYDPEDDLYIPCRELGISFQKGDVLHVI SREDPNWWQAYREGEEDQTLAGLIPSQSFQHQRETMKLAIAEEAGLARSRGKDGSGSK GATLLCARKGRKKKKKASSEAGYPLYATTAPDETDPEEILTYEEVALYYPRATHKRPI VLIGPPNIGRHELRQRLMADSERFSAAVPHTSRARREGEVPGVDYHFITRQAFEADIL ARRFVEHGEYEKAYYGTSLEAIRTVVASGKICVLNLHPQSLKLLRASDLKPYVVLVAP PSLDKLRQKKLRNGEPFKEEELKDIIATARDMEARWGHLFDMIIINNDTERAYHQLLA EINSLEREPQWVPAQWVHNNRDES" misc_feature 1190..1321 /gene="sdt" /note="L27 domain; Region: L27; pfam02828" /db_xref="CDD:460717" misc_feature 1598..1834 /gene="sdt" /note="PDZ domain of membrane palmitoylated protein 5 (MPP5), Drosophila Stardust, and related domains; Region: PDZ_MPP5-like; cd06798" /db_xref="CDD:467259" misc_feature order(1628..1648,1673..1675,1682..1684,1772..1774, 1784..1786,1793..1798) /gene="sdt" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467259" misc_feature 1943..2128 /gene="sdt" /note="Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5); Region: SH3_MPP5; cd12036" /db_xref="CDD:212969" misc_feature order(1949..1951,2021..2026) /gene="sdt" /note="GuK domain interface [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(1958..1960,1964..1966,1973..1975,2006..2008, 2060..2065,2117..2119,2123..2128) /gene="sdt" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(2402..2404,2420..2422,2462..2464,2489..2491, 2498..2500,2525..2527,2594..2596,2609..2611) /gene="sdt" /note="catalytic site [active]" /db_xref="CDD:238026" misc_feature order(2402..2404,2420..2422) /gene="sdt" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:238026" misc_feature 2417..2932 /gene="sdt" /note="Guanylate kinase homologues; Region: GuKc; smart00072" /db_xref="CDD:214504" polyA_site 3656 /gene="sdt" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctacgcgtt ctgcgatcgg ccgcaatttt tgttgatttt tttccaccca tttatatatt 61 tttttgtcgt atttctgttc gggccaagtg cgtgacaaag aaccgataac cgattagata 121 aggccatatg catatcagca acggcagcaa ttcgagctga aatgcgcatt aagttgcatt 181 tcatttggaa cacacaattc cctattcaaa tttatgcact gcccaggtgt gggcgtggcc 241 atttggccat ttgcatactt gctgctgcaa catctgtggt gacagttttt ggtttcggtt 301 tcggttcgct aggagagaca aagatcgatg aaagtgctat tcgaaaatgg tcgtgtccac 361 tttgcacata acgctggaga acaacggcaa tgttgccggc gggcagcaac cgttggcaac 421 tgctgctgct gctgctgctg ctgtcggagc agcaacatcg cccaccaagt ttgccgtcct 481 gtccgcccag cagttgcaat tgcaacacca gcaacagaac gagaaggaga accacatgaa 541 caataataat aataataaca gcgactattg tgatatgaat ggcaatggaa ttggtcgtag 601 tgttggaccg ggatctatat ctccgcattc tcccgagcaa tatgccggct cacctgcctc 661 agtcactgcc acgcctcagc gcaccgcctc cgccctgcgt cgcggcatcc aaatccagcg 721 atcctcgacg cgtttgcgac aacaacagga gcaactgcgc cgacgacgcg aggaggagga 781 gcgcatagcg cagcagaatg agttcctgcg gaacagtctg cgtggctccc ggaagctgaa 841 ggctctccag gacacggcca cgccccccgg caaggcggtg gcccaacagc agcagcagca 901 gcaggcaacg caggccaccc aggtggtggg cgtggagaat gaggcctatc tgcccgacga 961 cgaccagccg acgcaggtgg agcagatcga tggctatggc gagctgatag ccgccctcac 1021 gcgcctgcag agccagctga gcaagagcgg actgagcacc ctggcgggtc gcgtttcggc 1081 cgcccacagt gtgctggccg gcgccagtgt ggcccatgtc ctggccgccc gcacagccgt 1141 cctgcagcga cggcgttccc gccactccgg tcccctgcac cacagcgccc tcggtctgca 1201 gaaggacatt gtggagctgc tgacccagtc gaatacggcg gcggccatcg agctgggcaa 1261 cctgctgacc agccacgaaa tggagggtct gctgctggcc cacgatcgca tagccaatca 1321 cacggacggc acaccatcgc ccacgcccac gcccacgccg gcgatccctg gaggaggatt 1381 aggattgatc agtggtcaca gcagtccggt ggcgggaccc aaaaggaacc tgggaatggt 1441 ggtgccgccg cccgtcgttc caccgccgct ggcgcaacgc ggagcaatgc cactgccacg 1501 cggggagtcg ccaccgcctc cgcaactgcc catgcccatg tccaatctgc cgatgagcgc 1561 gtgtttcggc acgctgaacg atcagaacga caacatacgg atcatacaga tcgagaagtc 1621 gacggagccg ctgggcgcca ccgttcgcaa cgagggcgag gcggtggtca tcgggcggat 1681 tgtgcgcggc ggggcggccg agaagtcggg actgctgcac gagggcgacg agatcctgga 1741 ggtgaatggc caggaactca ggggcaagac ggtgaacgag gtgtgcgcgc tgttgggagc 1801 catgcagggc accctgacct tcttgattgt gcccgccggc agtccgccca tccatggagg 1861 agtgatgggc ggcggaggag gagtcgtcgc gggacaaacg ctcgccggat tgggcggagc 1921 tcatcgcgat accgccgtgc tgcatgtgcg ggcgcacttc gactacgatc ccgaggacga 1981 tctgtatatt ccgtgccggg agctgggcat cagcttccag aagggcgatg tgctgcacgt 2041 gatcagccgc gaggatccca actggtggca ggcgtaccgc gagggcgagg aggaccagac 2101 gctggccggt ctcattccta gtcagtcgtt ccagcatcag cgcgagacga tgaagctggc 2161 cattgccgag gaggcgggac tggcgcgatc gcggggcaag gacggttcgg gcagcaaggg 2221 ggccacgctc ctctgtgcgc gcaagggtcg caagaagaag aagaaggcca gctccgaggc 2281 ggggtatccc ctttacgcca ccacggcgcc cgatgaaacg gatcccgagg agatactcac 2341 ctacgaggag gtggccctct actatccgcg cgccacccac aagcggccca tcgtcctcat 2401 cggcccgccc aacattggca gacacgagct gcgccaacgc ctgatggccg actcggagcg 2461 attctctgcc gcagtgccac acacgtcacg agcccgcaga gagggcgaag tgcccggcgt 2521 ggattaccac tttatcacgc gccaggcctt cgaggcggat attttggcgc gtcgctttgt 2581 ggagcacggt gaatacgaga aggcctacta cggcacatca ctggaggcca tacgcacggt 2641 ggtggccagc ggcaagatct gtgtgctcaa cctgcatccg cagagcctca agctgctgcg 2701 cgcctccgac ctcaagccgt atgtggtgct ggtggcgccg cccagtctgg acaagctgcg 2761 tcagaagaag ctgcgcaacg gcgaaccctt caaggaggaa gagctcaaag acatcattgc 2821 cacggccagg gatatggagg cccgttgggg tcacctattc gacatgatca tcatcaacaa 2881 cgacacggag cgcgcctatc accagctgct ggccgagatc aactcgctgg aacgggagcc 2941 gcagtgggtg cccgcccagt gggtgcacaa caatcgcgac gagtcataat ggggtcgcca 3001 gaaccccaac ccacccaatt accaccaccc aatccagaaa taggaaccca aaacaactct 3061 ttgtaaatac aattttcaat tgagccatga agcggagtgc aggatcgatt ccagtccagt 3121 agttcggttt gcctgccgat gcgattaaca acgcccccta ccacaacccc tccaatatta 3181 tatatacaca tatatatata tatatattta tatactattc gttgcgtatg tgcattttag 3241 tcttagcgaa aataattgtt tttaatcgtg tgtgtcgccc tgttttgaaa gcattcccat 3301 aatacaaaac ccctttatgt atgttcacaa aatttgttgt tcgctgaacc attttgcggg 3361 gctgccacag agaaatcgag tagctgaaga gcctgctaaa ttgtatatta tgatttttcc 3421 atcgtttgtg atttctgtgg cattgccgtt ttgtacacct atattatacc catttttttt 3481 ttgtacgact accactaact tatattgtaa acgtattttt ttgtttaaac taagcttgag 3541 cacttcctta atttcaaggg gcaaattgaa attgtaaaat aacgaatcag cgctgggagg 3601 aaggccagaa tcgatatgac atagtaccct agaacccaat aaaatgtgta ataata