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LOCUS XM_017139213 3627 bp mRNA linear INV 09-DEC-2024 X3, mRNA. ACCESSION XM_017139213 VERSION XM_017139213.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139213.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3627 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3627 /gene="sdt" /note="stardust; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055739" CDS 141..2960 /gene="sdt" /codon_start=1 /product="protein PALS1 isoform X3" /protein_id="XP_016994702.2" /db_xref="GeneID:108055739" /translation="MRILKQWNRRRSGSSIVVLDGDDLKPCLPDDYISGQHHLNHQQQ LQLQQQLQQQHPLQQQHYRTHSGDIREIDQEMLTMLSVNQDNGPHREMAVDCPDTFIA RNKTPPRYPPPRPPQLNGNAKPVPPPRDHLRVEKDGRLVNCSPAPQLPDRRAPGNASS GSSGGLAHPLQQQQIAQIVEPTLEQLDSIKKYQEQLRRRREEEERIAQQNEFLRNSLR GSRKLKALQDTATPPGKAVAQQQQQQQATQATQVVGVENEAYLPDDDQPTQVEQIDGY GELIAALTRLQSQLSKSGLSTLAGRVSAAHSVLAGASVAHVLAARTAVLQRRRSRHSG PLHHSALGLQKDIVELLTQSNTAAAIELGNLLTSHEMEGLLLAHDRIANHTDGTPSPT PTPTPAIPGGGLGLISGHSSPVAGPKRNLGMVVPPPVVPPPLAQRGAMPLPRGESPPP PQLPMPMSNLPMSACFGTLNDQNDNIRIIQIEKSTEPLGATVRNEGEAVVIGRIVRGG AAEKSGLLHEGDEILEVNGQELRGKTVNEVCALLGAMQGTLTFLIVPAGSPPIHGGVM GGGGGVVAGQTLAGLGGAHRDTAVLHVRAHFDYDPEDDLYIPCRELGISFQKGDVLHV ISREDPNWWQAYREGEEDQTLAGLIPSQSFQHQRETMKLAIAEEAGLARSRGKDGSGS KGATLLCARKGRKKKKKASSEAGYPLYATTAPDETDPEEILTYEEVALYYPRATHKRP IVLIGPPNIGRHELRQRLMADSERFSAAVPHTSRARREGEVPGVDYHFITRQAFEADI LARRFVEHGEYEKAYYGTSLEAIRTVVASGKICVLNLHPQSLKLLRASDLKPYVVLVA PPSLDKLRQKKLRNGEPFKEEELKDIIATARDMEARWGHLFDMIIINNDTERAYHQLL AEINSLEREPQWVPAQWVHNNRDES" misc_feature 1161..1292 /gene="sdt" /note="L27 domain; Region: L27; pfam02828" /db_xref="CDD:460717" misc_feature 1569..1805 /gene="sdt" /note="PDZ domain of membrane palmitoylated protein 5 (MPP5), Drosophila Stardust, and related domains; Region: PDZ_MPP5-like; cd06798" /db_xref="CDD:467259" misc_feature order(1599..1619,1644..1646,1653..1655,1743..1745, 1755..1757,1764..1769) /gene="sdt" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467259" misc_feature 1914..2099 /gene="sdt" /note="Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5); Region: SH3_MPP5; cd12036" /db_xref="CDD:212969" misc_feature order(1920..1922,1992..1997) /gene="sdt" /note="GuK domain interface [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(1929..1931,1935..1937,1944..1946,1977..1979, 2031..2036,2088..2090,2094..2099) /gene="sdt" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(2373..2375,2391..2393,2433..2435,2460..2462, 2469..2471,2496..2498,2565..2567,2580..2582) /gene="sdt" /note="catalytic site [active]" /db_xref="CDD:238026" misc_feature order(2373..2375,2391..2393) /gene="sdt" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:238026" misc_feature 2388..2903 /gene="sdt" /note="Guanylate kinase homologues; Region: GuKc; smart00072" /db_xref="CDD:214504" polyA_site 3627 /gene="sdt" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgaaggcggc agaaatgtaa aagccaaaag gataaaccaa caaaaaggca aaattaaaaa 61 aaaaaagtta ttaaagaaag tgtcagaaag aaagggaacg acacaacaaa aaagagacag 121 agatcgaacg gattacagat atgcgcatcc taaagcaatg gaatcgccgg cgctccggat 181 cgagcattgt tgtgctggac ggcgacgatt tgaagccatg tctgccggat gactacataa 241 gcggccagca ccacctgaac caccagcagc agctgcaact gcagcagcag ctacagcagc 301 aacatccgct ccagcagcaa cactatcgca cgcactcggg cgacatcagg gagattgacc 361 aggaaatgct gaccatgctg tccgtgaacc aagataacgg tccacaccgt gagatggccg 421 tcgattgtcc ggacacgttc atcgcacgca acaagacgcc acccagatat ccgccacccc 481 gtccaccgca gctcaatggg aatgcgaagc ccgtaccgcc gccacgtgat catttgcggg 541 tggagaagga cgggcgtctg gtcaactgct cccccgcccc ccaacttccg gatcgccggg 601 cgccgggaaa tgcgagcagc ggcagcagcg gcggcttagc acatccgctg cagcaacagc 661 agatcgcaca gatcgtggag cccactttgg agcagctgga cagcatcaag aaataccagg 721 agcaactgcg ccgacgacgc gaggaggagg agcgcatagc gcagcagaat gagttcctgc 781 ggaacagtct gcgtggctcc cggaagctga aggctctcca ggacacggcc acgccccccg 841 gcaaggcggt ggcccaacag cagcagcagc agcaggcaac gcaggccacc caggtggtgg 901 gcgtggagaa tgaggcctat ctgcccgacg acgaccagcc gacgcaggtg gagcagatcg 961 atggctatgg cgagctgata gccgccctca cgcgcctgca gagccagctg agcaagagcg 1021 gactgagcac cctggcgggt cgcgtttcgg ccgcccacag tgtgctggcc ggcgccagtg 1081 tggcccatgt cctggccgcc cgcacagccg tcctgcagcg acggcgttcc cgccactccg 1141 gtcccctgca ccacagcgcc ctcggtctgc agaaggacat tgtggagctg ctgacccagt 1201 cgaatacggc ggcggccatc gagctgggca acctgctgac cagccacgaa atggagggtc 1261 tgctgctggc ccacgatcgc atagccaatc acacggacgg cacaccatcg cccacgccca 1321 cgcccacgcc ggcgatccct ggaggaggat taggattgat cagtggtcac agcagtccgg 1381 tggcgggacc caaaaggaac ctgggaatgg tggtgccgcc gcccgtcgtt ccaccgccgc 1441 tggcgcaacg cggagcaatg ccactgccac gcggggagtc gccaccgcct ccgcaactgc 1501 ccatgcccat gtccaatctg ccgatgagcg cgtgtttcgg cacgctgaac gatcagaacg 1561 acaacatacg gatcatacag atcgagaagt cgacggagcc gctgggcgcc accgttcgca 1621 acgagggcga ggcggtggtc atcgggcgga ttgtgcgcgg cggggcggcc gagaagtcgg 1681 gactgctgca cgagggcgac gagatcctgg aggtgaatgg ccaggaactc aggggcaaga 1741 cggtgaacga ggtgtgcgcg ctgttgggag ccatgcaggg caccctgacc ttcttgattg 1801 tgcccgccgg cagtccgccc atccatggag gagtgatggg cggcggagga ggagtcgtcg 1861 cgggacaaac gctcgccgga ttgggcggag ctcatcgcga taccgccgtg ctgcatgtgc 1921 gggcgcactt cgactacgat cccgaggacg atctgtatat tccgtgccgg gagctgggca 1981 tcagcttcca gaagggcgat gtgctgcacg tgatcagccg cgaggatccc aactggtggc 2041 aggcgtaccg cgagggcgag gaggaccaga cgctggccgg tctcattcct agtcagtcgt 2101 tccagcatca gcgcgagacg atgaagctgg ccattgccga ggaggcggga ctggcgcgat 2161 cgcggggcaa ggacggttcg ggcagcaagg gggccacgct cctctgtgcg cgcaagggtc 2221 gcaagaagaa gaagaaggcc agctccgagg cggggtatcc cctttacgcc accacggcgc 2281 ccgatgaaac ggatcccgag gagatactca cctacgagga ggtggccctc tactatccgc 2341 gcgccaccca caagcggccc atcgtcctca tcggcccgcc caacattggc agacacgagc 2401 tgcgccaacg cctgatggcc gactcggagc gattctctgc cgcagtgcca cacacgtcac 2461 gagcccgcag agagggcgaa gtgcccggcg tggattacca ctttatcacg cgccaggcct 2521 tcgaggcgga tattttggcg cgtcgctttg tggagcacgg tgaatacgag aaggcctact 2581 acggcacatc actggaggcc atacgcacgg tggtggccag cggcaagatc tgtgtgctca 2641 acctgcatcc gcagagcctc aagctgctgc gcgcctccga cctcaagccg tatgtggtgc 2701 tggtggcgcc gcccagtctg gacaagctgc gtcagaagaa gctgcgcaac ggcgaaccct 2761 tcaaggagga agagctcaaa gacatcattg ccacggccag ggatatggag gcccgttggg 2821 gtcacctatt cgacatgatc atcatcaaca acgacacgga gcgcgcctat caccagctgc 2881 tggccgagat caactcgctg gaacgggagc cgcagtgggt gcccgcccag tgggtgcaca 2941 acaatcgcga cgagtcataa tggggtcgcc agaaccccaa cccacccaat taccaccacc 3001 caatccagaa ataggaaccc aaaacaactc tttgtaaata caattttcaa ttgagccatg 3061 aagcggagtg caggatcgat tccagtccag tagttcggtt tgcctgccga tgcgattaac 3121 aacgccccct accacaaccc ctccaatatt atatatacac atatatatat atatatattt 3181 atatactatt cgttgcgtat gtgcatttta gtcttagcga aaataattgt ttttaatcgt 3241 gtgtgtcgcc ctgttttgaa agcattccca taatacaaaa cccctttatg tatgttcaca 3301 aaatttgttg ttcgctgaac cattttgcgg ggctgccaca gagaaatcga gtagctgaag 3361 agcctgctaa attgtatatt atgatttttc catcgtttgt gatttctgtg gcattgccgt 3421 tttgtacacc tatattatac ccattttttt tttgtacgac taccactaac ttatattgta 3481 aacgtatttt tttgtttaaa ctaagcttga gcacttcctt aatttcaagg ggcaaattga 3541 aattgtaaaa taacgaatca gcgctgggag gaaggccaga atcgatatga catagtaccc 3601 tagaacccaa taaaatgtgt aataata