Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017139212 4240 bp mRNA linear INV 09-DEC-2024 X2, mRNA. ACCESSION XM_017139212 VERSION XM_017139212.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139212.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4240 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4240 /gene="sdt" /note="stardust; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055739" CDS 49..3573 /gene="sdt" /codon_start=1 /product="protein PALS1 isoform X2" /protein_id="XP_016994701.2" /db_xref="GeneID:108055739" /translation="MQANSSRSNLSAQSSGTPSASTISSSQGKQQVVELSGYVIILVE NVEGKIKLYGSPPDRDNLEVGDEILEVNGLTLENISRTEVIRHIHDCIKSCTICLRVR KKNDSRLAWDIGNSVQDAFVIAVEEHARERLQRLAALNRVTPVDITQLSKKLLEDVIV HQASDVHSYSTSATATATAAIASSSSSSRAQQQHQLLNAAYELQQQQQQQQQQQQNSP TSSISIGRTELLLGDQSLRQDPRGNRRRSGSSIVVLDGDDLKPCLPDDYISGQHHLNH QQQLQLQQQLQQQHPLQQQHYRTHSGDIREIDQEMLTMLSVNQDNGPHREMAVDCPDT FIARNKTPPRYPPPRPPQLNGNAKPVPPPRDHLRVEKDGRLVNCSPAPQLPDRRAPGN ASSGSSGGLAHPLQQQQIAQIVEPTLEQLDSIKKYQEQLRRRREEEERIAQQNEFLRN SLRGSRKLKALQDTATPPGKAVAQQQQQQQATQATQVVGVENEAYLPDDDQPTQVEQI DGYGELIAALTRLQSQLSKSGLSTLAGRVSAAHSVLAGASVAHVLAARTAVLQRRRSR HSGPLHHSALGLQKDIVELLTQSNTAAAIELGNLLTSHEMEGLLLAHDRIANHTDGTP SPTPTPTPAIPGGGLGLISGHSSPVAGPKRNLGMVVPPPVVPPPLAQRGAMPLPRGES PPPPQLPMPMSNLPMSACFGTLNDQNDNIRIIQIEKSTEPLGATVRNEGEAVVIGRIV RGGAAEKSGLLHEGDEILEVNGQELRGKTVNEVCALLGAMQGTLTFLIVPAGSPPIHG GVMGGGGGVVAGQTLAGLGGAHRDTAVLHVRAHFDYDPEDDLYIPCRELGISFQKGDV LHVISREDPNWWQAYREGEEDQTLAGLIPSQSFQHQRETMKLAIAEEAGLARSRGKDG SGSKGATLLCARKGRKKKKKASSEAGYPLYATTAPDETDPEEILTYEEVALYYPRATH KRPIVLIGPPNIGRHELRQRLMADSERFSAAVPHTSRARREGEVPGVDYHFITRQAFE ADILARRFVEHGEYEKAYYGTSLEAIRTVVASGKICVLNLHPQSLKLLRASDLKPYVV LVAPPSLDKLRQKKLRNGEPFKEEELKDIIATARDMEARWGHLFDMIIINNDTERAYH QLLAEINSLEREPQWVPAQWVHNNRDES" misc_feature <208..348 /gene="sdt" /note="Domain present in PSD-95, Dlg, and ZO-1/2; Region: PDZ; smart00228" /db_xref="CDD:214570" misc_feature 2182..2418 /gene="sdt" /note="PDZ domain of membrane palmitoylated protein 5 (MPP5), Drosophila Stardust, and related domains; Region: PDZ_MPP5-like; cd06798" /db_xref="CDD:467259" misc_feature order(2212..2232,2257..2259,2266..2268,2356..2358, 2368..2370,2377..2382) /gene="sdt" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467259" misc_feature 2527..2712 /gene="sdt" /note="Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5); Region: SH3_MPP5; cd12036" /db_xref="CDD:212969" misc_feature order(2533..2535,2605..2610) /gene="sdt" /note="GuK domain interface [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(2542..2544,2548..2550,2557..2559,2590..2592, 2644..2649,2701..2703,2707..2712) /gene="sdt" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(2986..2988,3004..3006,3046..3048,3073..3075, 3082..3084,3109..3111,3178..3180,3193..3195) /gene="sdt" /note="catalytic site [active]" /db_xref="CDD:238026" misc_feature order(2986..2988,3004..3006) /gene="sdt" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:238026" misc_feature 3001..3516 /gene="sdt" /note="Guanylate kinase homologues; Region: GuKc; smart00072" /db_xref="CDD:214504" polyA_site 4240 /gene="sdt" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taagggcgaa caggtgcccc cgttgaagtg gcgcccctgc cttgcgcgat gcaagcgaac 61 agcagccgct ccaatttaag cgcacaatcc tcgggcacgc cgtcggcctc aacgatctcc 121 tcgtcccagg gcaagcaaca agttgtcgaa ctatcgggct atgtcatcat actcgtcgag 181 aatgtggagg gtaaaattaa actatacggc tcaccgcccg atcgcgataa tctggaagtg 241 ggcgatgaga tactcgaggt caatggcctg accctggaga atatttcgcg cacggaggtc 301 attcgccaca tacacgactg catcaaatcc tgcaccatct gtctgcgtgt gcgaaagaaa 361 aatgattcac gactggcctg ggatattggc aactcggtgc aggacgcctt cgtcatcgcc 421 gtcgaggagc acgcccgcga acgtctgcag agattggcgg ccttgaaccg ggtcacgccc 481 gtcgacatca cccagctgtc caaaaagtta ctagaagacg tcatcgtcca tcaggccagt 541 gatgtccatt catacagcac gagtgcaaca gcaacagcaa cagcagcaat cgccagcagc 601 agcagcagca gcagagcaca gcagcaacat cagttgctga atgccgccta cgagttgcag 661 caacagcaac agcagcagca gcagcagcaa cagaacagtc ccacaagtag catatcaata 721 ggaagaactg aacttttatt gggcgatcag agtttgcgac aggatcccag agggaatcgc 781 cggcgctccg gatcgagcat tgttgtgctg gacggcgacg atttgaagcc atgtctgccg 841 gatgactaca taagcggcca gcaccacctg aaccaccagc agcagctgca actgcagcag 901 cagctacagc agcaacatcc gctccagcag caacactatc gcacgcactc gggcgacatc 961 agggagattg accaggaaat gctgaccatg ctgtccgtga accaagataa cggtccacac 1021 cgtgagatgg ccgtcgattg tccggacacg ttcatcgcac gcaacaagac gccacccaga 1081 tatccgccac cccgtccacc gcagctcaat gggaatgcga agcccgtacc gccgccacgt 1141 gatcatttgc gggtggagaa ggacgggcgt ctggtcaact gctcccccgc cccccaactt 1201 ccggatcgcc gggcgccggg aaatgcgagc agcggcagca gcggcggctt agcacatccg 1261 ctgcagcaac agcagatcgc acagatcgtg gagcccactt tggagcagct ggacagcatc 1321 aagaaatacc aggagcaact gcgccgacga cgcgaggagg aggagcgcat agcgcagcag 1381 aatgagttcc tgcggaacag tctgcgtggc tcccggaagc tgaaggctct ccaggacacg 1441 gccacgcccc ccggcaaggc ggtggcccaa cagcagcagc agcagcaggc aacgcaggcc 1501 acccaggtgg tgggcgtgga gaatgaggcc tatctgcccg acgacgacca gccgacgcag 1561 gtggagcaga tcgatggcta tggcgagctg atagccgccc tcacgcgcct gcagagccag 1621 ctgagcaaga gcggactgag caccctggcg ggtcgcgttt cggccgccca cagtgtgctg 1681 gccggcgcca gtgtggccca tgtcctggcc gcccgcacag ccgtcctgca gcgacggcgt 1741 tcccgccact ccggtcccct gcaccacagc gccctcggtc tgcagaagga cattgtggag 1801 ctgctgaccc agtcgaatac ggcggcggcc atcgagctgg gcaacctgct gaccagccac 1861 gaaatggagg gtctgctgct ggcccacgat cgcatagcca atcacacgga cggcacacca 1921 tcgcccacgc ccacgcccac gccggcgatc cctggaggag gattaggatt gatcagtggt 1981 cacagcagtc cggtggcggg acccaaaagg aacctgggaa tggtggtgcc gccgcccgtc 2041 gttccaccgc cgctggcgca acgcggagca atgccactgc cacgcgggga gtcgccaccg 2101 cctccgcaac tgcccatgcc catgtccaat ctgccgatga gcgcgtgttt cggcacgctg 2161 aacgatcaga acgacaacat acggatcata cagatcgaga agtcgacgga gccgctgggc 2221 gccaccgttc gcaacgaggg cgaggcggtg gtcatcgggc ggattgtgcg cggcggggcg 2281 gccgagaagt cgggactgct gcacgagggc gacgagatcc tggaggtgaa tggccaggaa 2341 ctcaggggca agacggtgaa cgaggtgtgc gcgctgttgg gagccatgca gggcaccctg 2401 accttcttga ttgtgcccgc cggcagtccg cccatccatg gaggagtgat gggcggcgga 2461 ggaggagtcg tcgcgggaca aacgctcgcc ggattgggcg gagctcatcg cgataccgcc 2521 gtgctgcatg tgcgggcgca cttcgactac gatcccgagg acgatctgta tattccgtgc 2581 cgggagctgg gcatcagctt ccagaagggc gatgtgctgc acgtgatcag ccgcgaggat 2641 cccaactggt ggcaggcgta ccgcgagggc gaggaggacc agacgctggc cggtctcatt 2701 cctagtcagt cgttccagca tcagcgcgag acgatgaagc tggccattgc cgaggaggcg 2761 ggactggcgc gatcgcgggg caaggacggt tcgggcagca agggggccac gctcctctgt 2821 gcgcgcaagg gtcgcaagaa gaagaagaag gccagctccg aggcggggta tcccctttac 2881 gccaccacgg cgcccgatga aacggatccc gaggagatac tcacctacga ggaggtggcc 2941 ctctactatc cgcgcgccac ccacaagcgg cccatcgtcc tcatcggccc gcccaacatt 3001 ggcagacacg agctgcgcca acgcctgatg gccgactcgg agcgattctc tgccgcagtg 3061 ccacacacgt cacgagcccg cagagagggc gaagtgcccg gcgtggatta ccactttatc 3121 acgcgccagg ccttcgaggc ggatattttg gcgcgtcgct ttgtggagca cggtgaatac 3181 gagaaggcct actacggcac atcactggag gccatacgca cggtggtggc cagcggcaag 3241 atctgtgtgc tcaacctgca tccgcagagc ctcaagctgc tgcgcgcctc cgacctcaag 3301 ccgtatgtgg tgctggtggc gccgcccagt ctggacaagc tgcgtcagaa gaagctgcgc 3361 aacggcgaac ccttcaagga ggaagagctc aaagacatca ttgccacggc cagggatatg 3421 gaggcccgtt ggggtcacct attcgacatg atcatcatca acaacgacac ggagcgcgcc 3481 tatcaccagc tgctggccga gatcaactcg ctggaacggg agccgcagtg ggtgcccgcc 3541 cagtgggtgc acaacaatcg cgacgagtca taatggggtc gccagaaccc caacccaccc 3601 aattaccacc acccaatcca gaaataggaa cccaaaacaa ctctttgtaa atacaatttt 3661 caattgagcc atgaagcgga gtgcaggatc gattccagtc cagtagttcg gtttgcctgc 3721 cgatgcgatt aacaacgccc cctaccacaa cccctccaat attatatata cacatatata 3781 tatatatata tttatatact attcgttgcg tatgtgcatt ttagtcttag cgaaaataat 3841 tgtttttaat cgtgtgtgtc gccctgtttt gaaagcattc ccataataca aaaccccttt 3901 atgtatgttc acaaaatttg ttgttcgctg aaccattttg cggggctgcc acagagaaat 3961 cgagtagctg aagagcctgc taaattgtat attatgattt ttccatcgtt tgtgatttct 4021 gtggcattgc cgttttgtac acctatatta tacccatttt ttttttgtac gactaccact 4081 aacttatatt gtaaacgtat ttttttgttt aaactaagct tgagcacttc cttaatttca 4141 aggggcaaat tgaaattgta aaataacgaa tcagcgctgg gaggaaggcc agaatcgata 4201 tgacatagta ccctagaacc caataaaatg tgtaataata