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LOCUS XM_017139207 6050 bp mRNA linear INV 09-DEC-2024 X1, mRNA. ACCESSION XM_017139207 VERSION XM_017139207.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139207.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6050 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6050 /gene="sdt" /note="stardust; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055739" CDS 677..5383 /gene="sdt" /codon_start=1 /product="uncharacterized protein sdt isoform X1" /protein_id="XP_016994696.2" /db_xref="GeneID:108055739" /translation="MQANSSRSNLSAQSSGTPSASTISSSQGKQQVVELSGYVIILVE NVEGKIKLYGSPPDRDNLEVGDEILEVNGLTLENISRTEVIRHIHDCIKSCTICLRVR KKNDSRLAWDIGNSVQDAFVIAVEEHARERLQRLAALNRVTPVDITQLSKKLQQTKSG TSTSQRQDLSFLNESTPIYVTSFTSNQITCSSSTMTTATAGGPISAPSLATATSTVPT ASPSLHTTTVVAQIEHGHPGASALVGAAVAAATAADRNANSTTSAALKQTVNCLGPSG GQGHQIYQTSQAQQQQLQQLQQQLAAAAAAGKPLQAKSLLASSLQHLAEEVDNEDLDD DDDVDGANYCGITYISYNNKHAQLPTTTLPATTALPAAAATLATTAAIHQQRAQQQQQ QQLQHHPAVAAATSSQLNRPTAPAPLQLGGPVNPCFVDAQTSTSPLMVQQQQQDVAAS SSAASVVVMERHVHGTTTPKTEYSTAISSGQLQQAFAELQLHSSNNNATQQQQQQQHL LLSNNNNSNNSMAAAQTTASLMKNCDLLISNNLYPPRRELLEDVIVHQASDVHSYSTS ATATATAAIASSSSSSRAQQQHQLLNAAYELQQQQQQQQQQQQNSPTSSISIGRTELL LGDQSLRQDPRGNRRRSGSSIVVLDGDDLKPCLPDDYISGQHHLNHQQQLQLQQQLQQ QHPLQQQHYRTHSGDIREIDQEMLTMLSVNQDNGPHREMAVDCPDTFIARNKTPPRYP PPRPPQLNGNAKPVPPPRDHLRVEKDGRLVNCSPAPQLPDRRAPGNASSGSSGGLAHP LQQQQIAQIVEPTLEQLDSIKKYQEQLRRRREEEERIAQQNEFLRNSLRGSRKLKALQ DTATPPGKAVAQQQQQQQATQATQVVGVENEAYLPDDDQPTQVEQIDGYGELIAALTR LQSQLSKSGLSTLAGRVSAAHSVLAGASVAHVLAARTAVLQRRRSRHSGPLHHSALGL QKDIVELLTQSNTAAAIELGNLLTSHEMEGLLLAHDRIANHTDGTPSPTPTPTPAIPG GGLGLISGHSSPVAGPKRNLGMVVPPPVVPPPLAQRGAMPLPRGESPPPPQLPMPMSN LPMSACFGTLNDQNDNIRIIQIEKSTEPLGATVRNEGEAVVIGRIVRGGAAEKSGLLH EGDEILEVNGQELRGKTVNEVCALLGAMQGTLTFLIVPAGSPPIHGGVMGGGGGVVAG QTLAGLGGAHRDTAVLHVRAHFDYDPEDDLYIPCRELGISFQKGDVLHVISREDPNWW QAYREGEEDQTLAGLIPSQSFQHQRETMKLAIAEEAGLARSRGKDGSGSKGATLLCAR KGRKKKKKASSEAGYPLYATTAPDETDPEEILTYEEVALYYPRATHKRPIVLIGPPNI GRHELRQRLMADSERFSAAVPHTSRARREGEVPGVDYHFITRQAFEADILARRFVEHG EYEKAYYGTSLEAIRTVVASGKICVLNLHPQSLKLLRASDLKPYVVLVAPPSLDKLRQ KKLRNGEPFKEEELKDIIATARDMEARWGHLFDMIIINNDTERAYHQLLAEINSLERE PQWVPAQWVHNNRDES" misc_feature <836..976 /gene="sdt" /note="Domain present in PSD-95, Dlg, and ZO-1/2; Region: PDZ; smart00228" /db_xref="CDD:214570" misc_feature 3992..4228 /gene="sdt" /note="PDZ domain of membrane palmitoylated protein 5 (MPP5), Drosophila Stardust, and related domains; Region: PDZ_MPP5-like; cd06798" /db_xref="CDD:467259" misc_feature order(4022..4042,4067..4069,4076..4078,4166..4168, 4178..4180,4187..4192) /gene="sdt" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467259" misc_feature 4337..4522 /gene="sdt" /note="Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5); Region: SH3_MPP5; cd12036" /db_xref="CDD:212969" misc_feature order(4343..4345,4415..4420) /gene="sdt" /note="GuK domain interface [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(4352..4354,4358..4360,4367..4369,4400..4402, 4454..4459,4511..4513,4517..4522) /gene="sdt" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(4796..4798,4814..4816,4856..4858,4883..4885, 4892..4894,4919..4921,4988..4990,5003..5005) /gene="sdt" /note="catalytic site [active]" /db_xref="CDD:238026" misc_feature order(4796..4798,4814..4816) /gene="sdt" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:238026" misc_feature 4811..5326 /gene="sdt" /note="Guanylate kinase homologues; Region: GuKc; smart00072" /db_xref="CDD:214504" polyA_site 6050 /gene="sdt" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaaaaatacg agaaaaatgc taaaagccag ggcaaaaatg taaaacagcc gatgatgcaa 61 agagcgtccc aagcgcacaa gaaatacaac aaattaaatc caacaaattt agtaattata 121 tatagtaatc ttaaggcaaa cgaaacgcac aaccagaagc caaaatagat caagtaatta 181 agtctaaaca aatgtaatca ctaatcaagc gaagggaaat catcttcaac tgagaaaatc 241 agagaacatc aagtcttacc acggaactat tcgacttaga gcgctaaaca aaaatcaacg 301 ataagctgtt aaatttaagt acaatccaaa gacgatatgc tttcgatctg aggcgattgg 361 actgcaggag caatgagcat cagtgcgtcc tgggtttcgg ttctgtcgcc atctccactt 421 ccgattccga atccgaatcc aagtccaaaa ccaaatcaga atccaaatcc gaatccaaat 481 ccgaatccga atccgattcc ttctccgcct tccattgcca ggagcagcca acaggtgcat 541 cggccgtgtc tttgatgcca gttggagttg gacttggagc tgaggtagag caacaggaac 601 aggagcagga gcaggaacag aatccggata agggcgaaca ggtgcccccg ttgaagtggc 661 gcccctgcct tgcgcgatgc aagcgaacag cagccgctcc aatttaagcg cacaatcctc 721 gggcacgccg tcggcctcaa cgatctcctc gtcccagggc aagcaacaag ttgtcgaact 781 atcgggctat gtcatcatac tcgtcgagaa tgtggagggt aaaattaaac tatacggctc 841 accgcccgat cgcgataatc tggaagtggg cgatgagata ctcgaggtca atggcctgac 901 cctggagaat atttcgcgca cggaggtcat tcgccacata cacgactgca tcaaatcctg 961 caccatctgt ctgcgtgtgc gaaagaaaaa tgattcacga ctggcctggg atattggcaa 1021 ctcggtgcag gacgccttcg tcatcgccgt cgaggagcac gcccgcgaac gtctgcagag 1081 attggcggcc ttgaaccggg tcacgcccgt cgacatcacc cagctgtcca aaaagctgca 1141 acaaacgaag agcggcacgt cgacgagtca gcggcaggac ctgagcttcc tgaacgagtc 1201 gacgccgatc tatgtgacgt ccttcacgag caaccagatc acctgcagca gttccacgat 1261 gacgacggcc accgccggcg gtccgatcag tgcgccctcg ctggccacgg ccaccagcac 1321 ggtgcccacg gcctccccat ccctgcacac caccacggtg gtggcccaga tcgagcatgg 1381 ccatccgggg gcatccgctt tggtcggcgc cgccgtggca gccgcaacgg ccgccgatcg 1441 gaatgcgaat agcacaacat cggcggccct caagcagacg gtgaattgtc tggggccatc 1501 gggtggtcag ggtcaccaga tctaccagac cagccaggcg cagcagcaac agttgcagca 1561 gctgcagcag caacttgcag cagcggcggc ggcgggaaag ccgctgcagg cgaaatccct 1621 gctggccagc agtctgcagc atctcgccga ggaggtggac aacgaggatc tggacgatga 1681 cgacgatgtg gatggggcca actactgtgg catcacctac atcagttaca acaacaagca 1741 tgcccagttg ccgacgacga cgttgcctgc aacgactgcc ttgccggcgg cagctgccac 1801 tttggccacc acggcggcga tccatcagca gagagcccag cagcagcagc agcagcagtt 1861 gcaacatcat ccggcggtgg cagcagcaac atccagccaa ctcaatcgac ccacggcacc 1921 ggcacctctg cagctcggag gtcccgtcaa tccctgtttc gtggatgccc agacttccac 1981 gtcgccactg atggtgcagc agcaacagca ggatgtggca gcctcatcgt cagcggcaag 2041 tgtggtggtg atggagcggc atgttcatgg caccaccaca cccaaaacgg agtactccac 2101 ggccatttcc agtggccaat tgcagcaggc ctttgccgaa ttgcagctgc actcgagcaa 2161 caacaatgca acacagcagc agcaacagca gcaacattta cttttaagca acaacaataa 2221 tagcaataat tcaatggcag cggcacaaac aacggcatct ctgatgaaga attgtgatct 2281 actgatatcg aacaatctgt atccaccgag aagagagtta ctagaagacg tcatcgtcca 2341 tcaggccagt gatgtccatt catacagcac gagtgcaaca gcaacagcaa cagcagcaat 2401 cgccagcagc agcagcagca gcagagcaca gcagcaacat cagttgctga atgccgccta 2461 cgagttgcag caacagcaac agcagcagca gcagcagcaa cagaacagtc ccacaagtag 2521 catatcaata ggaagaactg aacttttatt gggcgatcag agtttgcgac aggatcccag 2581 agggaatcgc cggcgctccg gatcgagcat tgttgtgctg gacggcgacg atttgaagcc 2641 atgtctgccg gatgactaca taagcggcca gcaccacctg aaccaccagc agcagctgca 2701 actgcagcag cagctacagc agcaacatcc gctccagcag caacactatc gcacgcactc 2761 gggcgacatc agggagattg accaggaaat gctgaccatg ctgtccgtga accaagataa 2821 cggtccacac cgtgagatgg ccgtcgattg tccggacacg ttcatcgcac gcaacaagac 2881 gccacccaga tatccgccac cccgtccacc gcagctcaat gggaatgcga agcccgtacc 2941 gccgccacgt gatcatttgc gggtggagaa ggacgggcgt ctggtcaact gctcccccgc 3001 cccccaactt ccggatcgcc gggcgccggg aaatgcgagc agcggcagca gcggcggctt 3061 agcacatccg ctgcagcaac agcagatcgc acagatcgtg gagcccactt tggagcagct 3121 ggacagcatc aagaaatacc aggagcaact gcgccgacga cgcgaggagg aggagcgcat 3181 agcgcagcag aatgagttcc tgcggaacag tctgcgtggc tcccggaagc tgaaggctct 3241 ccaggacacg gccacgcccc ccggcaaggc ggtggcccaa cagcagcagc agcagcaggc 3301 aacgcaggcc acccaggtgg tgggcgtgga gaatgaggcc tatctgcccg acgacgacca 3361 gccgacgcag gtggagcaga tcgatggcta tggcgagctg atagccgccc tcacgcgcct 3421 gcagagccag ctgagcaaga gcggactgag caccctggcg ggtcgcgttt cggccgccca 3481 cagtgtgctg gccggcgcca gtgtggccca tgtcctggcc gcccgcacag ccgtcctgca 3541 gcgacggcgt tcccgccact ccggtcccct gcaccacagc gccctcggtc tgcagaagga 3601 cattgtggag ctgctgaccc agtcgaatac ggcggcggcc atcgagctgg gcaacctgct 3661 gaccagccac gaaatggagg gtctgctgct ggcccacgat cgcatagcca atcacacgga 3721 cggcacacca tcgcccacgc ccacgcccac gccggcgatc cctggaggag gattaggatt 3781 gatcagtggt cacagcagtc cggtggcggg acccaaaagg aacctgggaa tggtggtgcc 3841 gccgcccgtc gttccaccgc cgctggcgca acgcggagca atgccactgc cacgcgggga 3901 gtcgccaccg cctccgcaac tgcccatgcc catgtccaat ctgccgatga gcgcgtgttt 3961 cggcacgctg aacgatcaga acgacaacat acggatcata cagatcgaga agtcgacgga 4021 gccgctgggc gccaccgttc gcaacgaggg cgaggcggtg gtcatcgggc ggattgtgcg 4081 cggcggggcg gccgagaagt cgggactgct gcacgagggc gacgagatcc tggaggtgaa 4141 tggccaggaa ctcaggggca agacggtgaa cgaggtgtgc gcgctgttgg gagccatgca 4201 gggcaccctg accttcttga ttgtgcccgc cggcagtccg cccatccatg gaggagtgat 4261 gggcggcgga ggaggagtcg tcgcgggaca aacgctcgcc ggattgggcg gagctcatcg 4321 cgataccgcc gtgctgcatg tgcgggcgca cttcgactac gatcccgagg acgatctgta 4381 tattccgtgc cgggagctgg gcatcagctt ccagaagggc gatgtgctgc acgtgatcag 4441 ccgcgaggat cccaactggt ggcaggcgta ccgcgagggc gaggaggacc agacgctggc 4501 cggtctcatt cctagtcagt cgttccagca tcagcgcgag acgatgaagc tggccattgc 4561 cgaggaggcg ggactggcgc gatcgcgggg caaggacggt tcgggcagca agggggccac 4621 gctcctctgt gcgcgcaagg gtcgcaagaa gaagaagaag gccagctccg aggcggggta 4681 tcccctttac gccaccacgg cgcccgatga aacggatccc gaggagatac tcacctacga 4741 ggaggtggcc ctctactatc cgcgcgccac ccacaagcgg cccatcgtcc tcatcggccc 4801 gcccaacatt ggcagacacg agctgcgcca acgcctgatg gccgactcgg agcgattctc 4861 tgccgcagtg ccacacacgt cacgagcccg cagagagggc gaagtgcccg gcgtggatta 4921 ccactttatc acgcgccagg ccttcgaggc ggatattttg gcgcgtcgct ttgtggagca 4981 cggtgaatac gagaaggcct actacggcac atcactggag gccatacgca cggtggtggc 5041 cagcggcaag atctgtgtgc tcaacctgca tccgcagagc ctcaagctgc tgcgcgcctc 5101 cgacctcaag ccgtatgtgg tgctggtggc gccgcccagt ctggacaagc tgcgtcagaa 5161 gaagctgcgc aacggcgaac ccttcaagga ggaagagctc aaagacatca ttgccacggc 5221 cagggatatg gaggcccgtt ggggtcacct attcgacatg atcatcatca acaacgacac 5281 ggagcgcgcc tatcaccagc tgctggccga gatcaactcg ctggaacggg agccgcagtg 5341 ggtgcccgcc cagtgggtgc acaacaatcg cgacgagtca taatggggtc gccagaaccc 5401 caacccaccc aattaccacc acccaatcca gaaataggaa cccaaaacaa ctctttgtaa 5461 atacaatttt caattgagcc atgaagcgga gtgcaggatc gattccagtc cagtagttcg 5521 gtttgcctgc cgatgcgatt aacaacgccc cctaccacaa cccctccaat attatatata 5581 cacatatata tatatatata tttatatact attcgttgcg tatgtgcatt ttagtcttag 5641 cgaaaataat tgtttttaat cgtgtgtgtc gccctgtttt gaaagcattc ccataataca 5701 aaaccccttt atgtatgttc acaaaatttg ttgttcgctg aaccattttg cggggctgcc 5761 acagagaaat cgagtagctg aagagcctgc taaattgtat attatgattt ttccatcgtt 5821 tgtgatttct gtggcattgc cgttttgtac acctatatta tacccatttt ttttttgtac 5881 gactaccact aacttatatt gtaaacgtat ttttttgttt aaactaagct tgagcacttc 5941 cttaatttca aggggcaaat tgaaattgta aaataacgaa tcagcgctgg gaggaaggcc 6001 agaatcgata tgacatagta ccctagaacc caataaaatg tgtaataata