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LOCUS XM_017139204 7409 bp mRNA linear INV 09-DEC-2024 X6, mRNA. ACCESSION XM_017139204 VERSION XM_017139204.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139204.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7409 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7409 /gene="sdt" /note="stardust; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108055739" CDS 761..6742 /gene="sdt" /codon_start=1 /product="uncharacterized protein sdt isoform X5" /protein_id="XP_016994693.2" /db_xref="GeneID:108055739" /translation="MQANSSRSNLSAQSSGTPSASTISSSQGKQQVVELSGYVIILVE NVEGKIKLYGSPPDRDNLEVGDEILEVNGLTLENISRTEVIRHIHDCIKSCTICLRVR KKNDSRLAWDIGNSVQDAFVIAVEEHARERLQRLAALNRVTPVDITQLSKKLQQTKSG TSTSQRQDLSFLNESTPIYVTSFTSNQITCSSSTMTTATAGGPISAPSLATATSTVPT ASPSLHTTTVVAQIEHGHPGASALVGAAVAAATAADRNANSTTSAALKQTVNCLGPSG GQGHQIYQTSQAQQQQLQQLQQQLAAAAAAGKPLQAKSLLASSLQHLAEEVDNEDLDD DDDVDGANYCGITYISYNNKHAQLPTTTLPATTALPAAAATLATTAAIHQQRAQQQQQ QQLQHHPAVAAATSSQLNRPTAPAPLQLGGPVNPCFVDAQTSTSPLMVQQQQQDVAAS SSAASVVVMERHVHGTTTPKTEYSTAISSGQLQQAFAELQLHSSNNNATQQQQQQQHL LLSNNNNSNNSMAAAQTTASLMKNCDLLISNNLYPPRRELLEDVIVHQASDVHSYSTS ATATATAAIASSSSSSRAQQQHQLLNAAYELQQQQQQQQQQQQNSPTSSISIGRTELL LGDQSLRQDPRGNRRRSGSSIVVLDGDDLKPCLPDDYISGQHHLNHQQQLQLQQQLQQ QHPLQQQHYRTHSGDIREIDQEMLTMLSVNQDNGPHREMAVDCPDTFIARNKTPPRYP PPRPPQKHKKSTTNNTTTTTTITAMTNNDHANKMLIVAYHSSHQHEQLQQQPPPPHHE KQQQHPSKTTNIALDVATQNLYNQKQQNKLEQIENYENCLQSEQPNEQLEQKQKQQQL QVATATTVGATTTATQVAQQQTPSHKLQATLSSDPNGNSNSNSNANGTSSSSNNSSIT DDFLCVVDGLYQRKDSASPSSSAFDEVMSKHTLDSFGSIAYRHLHQQHQATSNGNSSN SNGNTSSNTADSNKTNTVAGVTSSSSNSNSLNSSNSSMHTSNSNSSNSSSSGHSSNIA SATSTSSSTVPDDLSLAPPGYEVSQQQHHVAPVTVLLPPMAKHRELPVDVPDSFIEMV KTPPRYPPPAHLSSRGSLLSNGSASTAHTTLSSMGVSPSPAAAATATAPATAAATATS ACATASVAAAVSGVADGDARRVADELNGNAKPVPPPRDHLRVEKDGRLVNCSPAPQLP DRRAPGNASSGSSGGLAHPLQQQQIAQIVEPTLEQLDSIKKYQEQLRRRREEEERIAQ QNEFLRNSLRGSRKLKALQDTATPPGKAVAQQQQQQQATQATQVVGVENEAYLPDDDQ PTQVEQIDGYGELIAALTRLQSQLSKSGLSTLAGRVSAAHSVLAGASVAHVLAARTAV LQRRRSRHSGPLHHSALGLQKDIVELLTQSNTAAAIELGNLLTSHEMEGLLLAHDRIA NHTDGTPSPTPTPTPAIPGGGLGLISGHSSPVAGPKRNLGMVVPPPVVPPPLAQRGAM PLPRGESPPPPQLPMPMSNLPMSACFGTLNDQNDNIRIIQIEKSTEPLGATVRNEGEA VVIGRIVRGGAAEKSGLLHEGDEILEVNGQELRGKTVNEVCALLGAMQGTLTFLIVPA GSPPIHGGVMGGGGGVVAGQTLAGLGGAHRDTAVLHVRAHFDYDPEDDLYIPCRELGI SFQKGDVLHVISREDPNWWQAYREGEEDQTLAGLIPSQSFQHQRETMKLAIAEEAGLA RSRGKDGSGSKGATLLCARKGRKKKKKASSEAGYPLYATTAPDETDPEEILTYEEVAL YYPRATHKRPIVLIGPPNIGRHELRQRLMADSERFSAAVPHTSRARREGEVPGVDYHF ITRQAFEADILARRFVEHGEYEKAYYGTSLEAIRTVVASGKICVLNLHPQSLKLLRAS DLKPYVVLVAPPSLDKLRQKKLRNGEPFKEEELKDIIATARDMEARWGHLFDMIIINN DTERAYHQLLAEINSLEREPQWVPAQWVHNNRDES" misc_feature <920..1060 /gene="sdt" /note="Domain present in PSD-95, Dlg, and ZO-1/2; Region: PDZ; smart00228" /db_xref="CDD:214570" misc_feature 5351..5587 /gene="sdt" /note="PDZ domain of membrane palmitoylated protein 5 (MPP5), Drosophila Stardust, and related domains; Region: PDZ_MPP5-like; cd06798" /db_xref="CDD:467259" misc_feature order(5381..5401,5426..5428,5435..5437,5525..5527, 5537..5539,5546..5551) /gene="sdt" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467259" misc_feature 5696..5881 /gene="sdt" /note="Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5); Region: SH3_MPP5; cd12036" /db_xref="CDD:212969" misc_feature order(5702..5704,5774..5779) /gene="sdt" /note="GuK domain interface [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(5711..5713,5717..5719,5726..5728,5759..5761, 5813..5818,5870..5872,5876..5881) /gene="sdt" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212969" misc_feature order(6155..6157,6173..6175,6215..6217,6242..6244, 6251..6253,6278..6280,6347..6349,6362..6364) /gene="sdt" /note="catalytic site [active]" /db_xref="CDD:238026" misc_feature order(6155..6157,6173..6175) /gene="sdt" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:238026" misc_feature 6170..6685 /gene="sdt" /note="Guanylate kinase homologues; Region: GuKc; smart00072" /db_xref="CDD:214504" polyA_site 7409 /gene="sdt" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgtcgctatt ttcttgttgt ttttttggta actttttttt tgtgccgttc tttaatccct 61 ggctaaaaca aaaaaaaaaa aaaggaaaaa tacgagaaaa atgctaaaag ccagggcaaa 121 aatgtaaaac agccgatgat gcaaagagcg tcccaagcgc acaagaaata caacaaatta 181 aatccaacaa atttagtaat tatatatagt aatcttaagg caaacgaaac gcacaaccag 241 aagccaaaat agatcaagta attaagtcta aacaaatgta atcactaatc aagcgaaggg 301 aaatcatctt caactgagaa aatcagagaa catcaagtct taccacggaa ctattcgact 361 tagagcgcta aacaaaaatc aacgataagc tgttaaattt aagtacaatc caaagacgat 421 atgctttcga tctgaggcga ttggactgca ggagcaatga gcatcagtgc gtcctgggtt 481 tcggttctgt cgccatctcc acttccgatt ccgaatccga atccaagtcc aaaaccaaat 541 cagaatccaa atccgaatcc aaatccgaat ccgaatccga ttccttctcc gccttccatt 601 gccaggagca gccaacaggt gcatcggccg tgtctttgat gccagttgga gttggacttg 661 gagctgaggt agagcaacag gaacaggagc aggagcagga acagaatccg gataagggcg 721 aacaggtgcc cccgttgaag tggcgcccct gccttgcgcg atgcaagcga acagcagccg 781 ctccaattta agcgcacaat cctcgggcac gccgtcggcc tcaacgatct cctcgtccca 841 gggcaagcaa caagttgtcg aactatcggg ctatgtcatc atactcgtcg agaatgtgga 901 gggtaaaatt aaactatacg gctcaccgcc cgatcgcgat aatctggaag tgggcgatga 961 gatactcgag gtcaatggcc tgaccctgga gaatatttcg cgcacggagg tcattcgcca 1021 catacacgac tgcatcaaat cctgcaccat ctgtctgcgt gtgcgaaaga aaaatgattc 1081 acgactggcc tgggatattg gcaactcggt gcaggacgcc ttcgtcatcg ccgtcgagga 1141 gcacgcccgc gaacgtctgc agagattggc ggccttgaac cgggtcacgc ccgtcgacat 1201 cacccagctg tccaaaaagc tgcaacaaac gaagagcggc acgtcgacga gtcagcggca 1261 ggacctgagc ttcctgaacg agtcgacgcc gatctatgtg acgtccttca cgagcaacca 1321 gatcacctgc agcagttcca cgatgacgac ggccaccgcc ggcggtccga tcagtgcgcc 1381 ctcgctggcc acggccacca gcacggtgcc cacggcctcc ccatccctgc acaccaccac 1441 ggtggtggcc cagatcgagc atggccatcc gggggcatcc gctttggtcg gcgccgccgt 1501 ggcagccgca acggccgccg atcggaatgc gaatagcaca acatcggcgg ccctcaagca 1561 gacggtgaat tgtctggggc catcgggtgg tcagggtcac cagatctacc agaccagcca 1621 ggcgcagcag caacagttgc agcagctgca gcagcaactt gcagcagcgg cggcggcggg 1681 aaagccgctg caggcgaaat ccctgctggc cagcagtctg cagcatctcg ccgaggaggt 1741 ggacaacgag gatctggacg atgacgacga tgtggatggg gccaactact gtggcatcac 1801 ctacatcagt tacaacaaca agcatgccca gttgccgacg acgacgttgc ctgcaacgac 1861 tgccttgccg gcggcagctg ccactttggc caccacggcg gcgatccatc agcagagagc 1921 ccagcagcag cagcagcagc agttgcaaca tcatccggcg gtggcagcag caacatccag 1981 ccaactcaat cgacccacgg caccggcacc tctgcagctc ggaggtcccg tcaatccctg 2041 tttcgtggat gcccagactt ccacgtcgcc actgatggtg cagcagcaac agcaggatgt 2101 ggcagcctca tcgtcagcgg caagtgtggt ggtgatggag cggcatgttc atggcaccac 2161 cacacccaaa acggagtact ccacggccat ttccagtggc caattgcagc aggcctttgc 2221 cgaattgcag ctgcactcga gcaacaacaa tgcaacacag cagcagcaac agcagcaaca 2281 tttactttta agcaacaaca ataatagcaa taattcaatg gcagcggcac aaacaacggc 2341 atctctgatg aagaattgtg atctactgat atcgaacaat ctgtatccac cgagaagaga 2401 gttactagaa gacgtcatcg tccatcaggc cagtgatgtc cattcataca gcacgagtgc 2461 aacagcaaca gcaacagcag caatcgccag cagcagcagc agcagcagag cacagcagca 2521 acatcagttg ctgaatgccg cctacgagtt gcagcaacag caacagcagc agcagcagca 2581 gcaacagaac agtcccacaa gtagcatatc aataggaaga actgaacttt tattgggcga 2641 tcagagtttg cgacaggatc ccagagggaa tcgccggcgc tccggatcga gcattgttgt 2701 gctggacggc gacgatttga agccatgtct gccggatgac tacataagcg gccagcacca 2761 cctgaaccac cagcagcagc tgcaactgca gcagcagcta cagcagcaac atccgctcca 2821 gcagcaacac tatcgcacgc actcgggcga catcagggag attgaccagg aaatgctgac 2881 catgctgtcc gtgaaccaag ataacggtcc acaccgtgag atggccgtcg attgtccgga 2941 cacgttcatc gcacgcaaca agacgccacc cagatatccg ccaccccgtc caccgcagaa 3001 acacaagaaa agcaccacca acaacaccac caccaccact acaatcacag ctatgactaa 3061 caatgatcat gctaacaaaa tgttaattgt tgcatatcat tcttcacatc aacatgaaca 3121 actacaacaa caaccaccac caccacatca tgaaaaacaa caacaacacc catcaaaaac 3181 aacaaatatt gcactcgatg tggccacaca aaatctgtac aatcaaaaac aacaaaacaa 3241 attggaacaa attgaaaact atgaaaattg cctacaatcg gaacaaccaa acgaacaact 3301 cgagcagaag cagaagcagc aacaattgca agtagcaaca gcaacaacag taggagcaac 3361 aacaactgca acacaggtgg cccaacaaca gacgcccagc cacaagttgc aggcaacact 3421 gagcagcgat ccaaatggca acagcaacag caacagcaat gccaacggaa ccagcagcag 3481 cagcaacaac agcagcatca ccgacgactt cctctgcgtt gtcgatggtc tctatcagcg 3541 caaggactcc gcctcgccct cgtcgagcgc cttcgatgag gtgatgagca agcataccct 3601 cgactccttc ggcagcatcg cctaccgtca cctgcaccag caacatcagg cgacgagcaa 3661 cggcaacagc agcaacagta atgggaatac cagcagcaac acagctgatt cgaataaaac 3721 caatacggta gcgggagtga cgagcagcag cagcaacagc aactcgctga acagcagcaa 3781 cagctcgatg cacaccagca acagcaatag cagcaacagc agcagcagcg gacacagcag 3841 caacattgcc agtgccactt cgaccagcag ctcaacggtg cccgatgatc tgagcctggc 3901 gccacctggc tacgaggtga gccagcagca acatcatgtt gctcccgtga cggtgttgct 3961 gcccccgatg gccaagcatc gcgagttgcc cgtggatgtg ccagacagct ttatcgagat 4021 ggtcaagacg ccgccaagat atccgccacc tgctcacctt tcttctcgcg gatcgctttt 4081 atcgaacggc agcgcctcca ccgcccacac gacgctctcc tcgatgggcg tgtcgccttc 4141 gccagcagca gcagcaactg caacagcacc agcaacagca gcagcaacag caacatcggc 4201 atgtgcaacc gcaagtgttg ctgctgcggt ttctggtgtt gctgacggcg atgcgaggcg 4261 ggtggccgat gagctcaatg ggaatgcgaa gcccgtaccg ccgccacgtg atcatttgcg 4321 ggtggagaag gacgggcgtc tggtcaactg ctcccccgcc ccccaacttc cggatcgccg 4381 ggcgccggga aatgcgagca gcggcagcag cggcggctta gcacatccgc tgcagcaaca 4441 gcagatcgca cagatcgtgg agcccacttt ggagcagctg gacagcatca agaaatacca 4501 ggagcaactg cgccgacgac gcgaggagga ggagcgcata gcgcagcaga atgagttcct 4561 gcggaacagt ctgcgtggct cccggaagct gaaggctctc caggacacgg ccacgccccc 4621 cggcaaggcg gtggcccaac agcagcagca gcagcaggca acgcaggcca cccaggtggt 4681 gggcgtggag aatgaggcct atctgcccga cgacgaccag ccgacgcagg tggagcagat 4741 cgatggctat ggcgagctga tagccgccct cacgcgcctg cagagccagc tgagcaagag 4801 cggactgagc accctggcgg gtcgcgtttc ggccgcccac agtgtgctgg ccggcgccag 4861 tgtggcccat gtcctggccg cccgcacagc cgtcctgcag cgacggcgtt cccgccactc 4921 cggtcccctg caccacagcg ccctcggtct gcagaaggac attgtggagc tgctgaccca 4981 gtcgaatacg gcggcggcca tcgagctggg caacctgctg accagccacg aaatggaggg 5041 tctgctgctg gcccacgatc gcatagccaa tcacacggac ggcacaccat cgcccacgcc 5101 cacgcccacg ccggcgatcc ctggaggagg attaggattg atcagtggtc acagcagtcc 5161 ggtggcggga cccaaaagga acctgggaat ggtggtgccg ccgcccgtcg ttccaccgcc 5221 gctggcgcaa cgcggagcaa tgccactgcc acgcggggag tcgccaccgc ctccgcaact 5281 gcccatgccc atgtccaatc tgccgatgag cgcgtgtttc ggcacgctga acgatcagaa 5341 cgacaacata cggatcatac agatcgagaa gtcgacggag ccgctgggcg ccaccgttcg 5401 caacgagggc gaggcggtgg tcatcgggcg gattgtgcgc ggcggggcgg ccgagaagtc 5461 gggactgctg cacgagggcg acgagatcct ggaggtgaat ggccaggaac tcaggggcaa 5521 gacggtgaac gaggtgtgcg cgctgttggg agccatgcag ggcaccctga ccttcttgat 5581 tgtgcccgcc ggcagtccgc ccatccatgg aggagtgatg ggcggcggag gaggagtcgt 5641 cgcgggacaa acgctcgccg gattgggcgg agctcatcgc gataccgccg tgctgcatgt 5701 gcgggcgcac ttcgactacg atcccgagga cgatctgtat attccgtgcc gggagctggg 5761 catcagcttc cagaagggcg atgtgctgca cgtgatcagc cgcgaggatc ccaactggtg 5821 gcaggcgtac cgcgagggcg aggaggacca gacgctggcc ggtctcattc ctagtcagtc 5881 gttccagcat cagcgcgaga cgatgaagct ggccattgcc gaggaggcgg gactggcgcg 5941 atcgcggggc aaggacggtt cgggcagcaa gggggccacg ctcctctgtg cgcgcaaggg 6001 tcgcaagaag aagaagaagg ccagctccga ggcggggtat cccctttacg ccaccacggc 6061 gcccgatgaa acggatcccg aggagatact cacctacgag gaggtggccc tctactatcc 6121 gcgcgccacc cacaagcggc ccatcgtcct catcggcccg cccaacattg gcagacacga 6181 gctgcgccaa cgcctgatgg ccgactcgga gcgattctct gccgcagtgc cacacacgtc 6241 acgagcccgc agagagggcg aagtgcccgg cgtggattac cactttatca cgcgccaggc 6301 cttcgaggcg gatattttgg cgcgtcgctt tgtggagcac ggtgaatacg agaaggccta 6361 ctacggcaca tcactggagg ccatacgcac ggtggtggcc agcggcaaga tctgtgtgct 6421 caacctgcat ccgcagagcc tcaagctgct gcgcgcctcc gacctcaagc cgtatgtggt 6481 gctggtggcg ccgcccagtc tggacaagct gcgtcagaag aagctgcgca acggcgaacc 6541 cttcaaggag gaagagctca aagacatcat tgccacggcc agggatatgg aggcccgttg 6601 gggtcaccta ttcgacatga tcatcatcaa caacgacacg gagcgcgcct atcaccagct 6661 gctggccgag atcaactcgc tggaacggga gccgcagtgg gtgcccgccc agtgggtgca 6721 caacaatcgc gacgagtcat aatggggtcg ccagaacccc aacccaccca attaccacca 6781 cccaatccag aaataggaac ccaaaacaac tctttgtaaa tacaattttc aattgagcca 6841 tgaagcggag tgcaggatcg attccagtcc agtagttcgg tttgcctgcc gatgcgatta 6901 acaacgcccc ctaccacaac ccctccaata ttatatatac acatatatat atatatatat 6961 ttatatacta ttcgttgcgt atgtgcattt tagtcttagc gaaaataatt gtttttaatc 7021 gtgtgtgtcg ccctgttttg aaagcattcc cataatacaa aaccccttta tgtatgttca 7081 caaaatttgt tgttcgctga accattttgc ggggctgcca cagagaaatc gagtagctga 7141 agagcctgct aaattgtata ttatgatttt tccatcgttt gtgatttctg tggcattgcc 7201 gttttgtaca cctatattat acccattttt tttttgtacg actaccacta acttatattg 7261 taaacgtatt tttttgttta aactaagctt gagcacttcc ttaatttcaa ggggcaaatt 7321 gaaattgtaa aataacgaat cagcgctggg aggaaggcca gaatcgatat gacatagtac 7381 cctagaaccc aataaaatgt gtaataata