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LOCUS XM_017139202 3895 bp mRNA linear INV 09-DEC-2024 subunit myospheroid (mys), transcript variant X2, mRNA. ACCESSION XM_017139202 VERSION XM_017139202.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139202.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3895 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3895 /gene="mys" /note="position-specific antigen beta subunit myospheroid; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108055738" CDS 191..2731 /gene="mys" /codon_start=1 /product="integrin beta-PS isoform X1" /protein_id="XP_016994691.2" /db_xref="GeneID:108055738" /translation="MILERNRGSQVALLLVVLLAAIAAQTGAQKSGKLTTTGTSCASK LRCNTCIQVEGCGWCLDIDFKGQSRCYQNGTQKCDNQWFPQNLEKILLNEELTAESSG SSSGFSGSSGYSIESGSSGSSGSSSSSGHFSQNSGGSISGSGAHRSSGKIVQIQPQSL KLSLRVNQKHNLRVSYSQAVGYPVDLYYLMDLSKSMEDDKQSLSKLGDKLSTAMKEIT SNFRLGFGSFVDKVLMPYVSTIQKKLDHPCDNCKAPYGYHNHMPLNNNTESFSEEVKG AQVSGNLDAPEGGFDAIMQAIACRSEIGWRNESRRLLVFSTDAGFHYAGDGKLGGVIA PNDGECHLNAQGEYTHSIYQDYPSISQINQKVKDNAINIIFAVTANQLSVYEKLVEHI QGSSAAKLDNDSANVVDLVKSEYDKISSSVEMKDDASSYVKINYFSSCLGNGTPVATN KCEKVKQGTKVTFNAEIQLLKCPEDPRDWHQTIRISPVGINEYMEIQLEMLCSCPCEH SGSQGYEANASICNGHGTSMCGICQCDENHFGNKCECNAMDINSKNGNDASCRADNTT LTDCSGRGNCVCGTCDCHKRPNPEEEVSGKFCECDNFSCERNKNQLCSGPDHGTCECG QCKCKPGWGGTNCGCLESTDSCLAPGSTELCSGHGACECGVCKCTATEQGRYSGRFCE KCPTCSGRCQELKDCVQCQMYKTGVLKNGDDCANNCTLFTPVGVEKVEIEEHKDEQIC TFFDEDDCKFMFKYSEDGQVLKVSAQENKECPPKVFMLGIVLGVIAAIVLVGLAILLL WKLLTTIHDRREFARFEKERMNAKWDTGENPIYKQATSTFKNPMYAGK" misc_feature 329..1702 /gene="mys" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057" /db_xref="CDD:469594" misc_feature 1721..1798 /gene="mys" /note="Integrin beta epidermal growth factor like domain 1; Region: I-EGF_1; pfam18372" /db_xref="CDD:465729" misc_feature 2105..>2239 /gene="mys" /note="Domain of unknown function (DUF3844); Region: DUF3844; pfam12955" /db_xref="CDD:432898" misc_feature 2261..2515 /gene="mys" /note="Integrin beta tail domain; Region: Integrin_B_tail; pfam07965" /db_xref="CDD:462325" misc_feature 2597..2719 /gene="mys" /note="Integrin beta cytoplasmic domain; Region: Integrin_b_cyt; pfam08725" /db_xref="CDD:462580" polyA_site 3895 /gene="mys" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctatctttat gttatgttat cgatatgtaa cgtatcattt catatgttat gttattaatc 61 gcatcgcatt ctgttccgct gttccgttcc aacaagacaa agcaagaccg gcgcacggaa 121 gagacaggga tagagcacct agcactcgca ctcgcacaga catcctgcat caacctacac 181 ccacacagcc atgatcctcg agagaaaccg ggggagccag gtggcccttc ttctggtcgt 241 cctgctggcg gccatcgctg cccaaacggg ggcccagaaa tccggcaaac tgacgacgac 301 cgggacttcc tgcgcctcca agctgagatg caacacctgc atccaggtgg agggatgcgg 361 ctggtgcctg gacatcgact tcaagggcca gtcacgttgc taccagaacg gaacccaaaa 421 gtgcgacaac cagtggttcc cgcagaacct ggagaagatt ctattgaacg aggagctgac 481 cgccgagtcc agtggatcct ctagtggctt cagtggatcc agtggctatt ccatcgagag 541 cggcagcagc ggcagcagcg gcagcagcag cagttcgggc cactttagcc agaactccgg 601 cggctcgatc tccggcagcg gggcgcacag gtcctcgggc aagatagtcc agatccagcc 661 gcagtccctg aagctctcgt tgcgcgtcaa tcagaagcac aacctcaggg tcagctactc 721 ccaggcggtg ggctatcccg tggatctcta ctacttgatg gacctctcca agtccatgga 781 ggacgacaag cagagtctct ccaagctggg cgacaagctg tccacggcca tgaaggaaat 841 cacctccaac ttccgcctgg gcttcggttc gtttgtggac aaggtgctca tgccctatgt 901 ctcgaccatt cagaagaaac tcgatcatcc ctgcgacaac tgcaaggctc cctacggtta 961 ccacaatcac atgccactca acaataacac cgaaagcttc tctgaagagg tgaagggcgc 1021 ccaggtgtcg ggcaatctgg atgctccgga gggcggattc gatgccatta tgcaggccat 1081 tgcctgtcgc tcggaaatcg gctggcgcaa cgagtcccgt cgcctgctgg tcttctccac 1141 ggacgccggt ttccattatg ccggcgacgg caagctgggc ggagtgattg cccccaacga 1201 cggcgagtgc catctgaatg cccagggcga gtacacgcac tccatttacc aggactaccc 1261 gagcatctcg cagatcaacc agaaggtcaa ggacaatgcc atcaacatta tcttcgcggt 1321 gaccgccaat cagctgtcgg tctacgagaa gctggtggag cacattcagg gctcctcggc 1381 cgccaagctg gacaacgact cggccaacgt ggtggatctg gtcaagagtg aatacgataa 1441 aatctcctct tcggtggaga tgaaggacga cgccagttcg tatgtgaaga tcaactactt 1501 ctcctcctgc ctgggcaacg gaaccccagt ggccaccaac aagtgcgaga aggtgaagca 1561 gggcaccaag gtgaccttca atgccgagat ccagctgctc aagtgccccg aggatccgcg 1621 cgactggcac cagaccatcc gcatttcgcc cgtcggcatc aacgagtaca tggagatcca 1681 gctggagatg ctctgctcct gtccctgcga gcattccggg tcgcagggct acgaggcgaa 1741 tgcctcgatc tgcaacggcc acggcacctc catgtgcggc atctgccagt gcgacgagaa 1801 tcactttggc aacaagtgcg agtgcaatgc gatggacatt aactcgaaga acggcaacga 1861 cgcttcctgc cgggcggaca acacgacgct gacggactgc tcgggtcgcg gcaactgcgt 1921 ctgcggcacc tgcgactgcc acaagcgtcc gaatcccgag gaggaggtgt ccggcaagtt 1981 ctgcgagtgc gacaacttta gctgcgagcg gaacaagaac cagctgtgct cgggccccga 2041 tcacggcacc tgcgagtgcg gccagtgcaa gtgcaagccc ggctggggtg gcaccaactg 2101 cggctgcctg gagtccacgg acagctgttt ggcgcccggc agcacggaac tctgctccgg 2161 ccacggcgcc tgcgagtgcg gcgtctgcaa gtgcacggcc accgagcagg gacgctactc 2221 gggcaggttc tgcgagaagt gccccacctg ctcgggtcga tgccaggagc tgaaggactg 2281 cgtccagtgc cagatgtaca agacgggcgt gctgaagaac ggcgatgact gcgccaataa 2341 ctgcactctg ttcacgcccg ttggcgtgga gaaggtggag atcgaggagc acaaggacga 2401 gcagatatgc accttcttcg acgaggacga ctgcaagttc atgttcaagt acagcgagga 2461 tggacaggtg ctcaaggtct ccgcccagga gaacaaggag tgtccgccca aggtcttcat 2521 gctgggcatt gtcctgggcg tcattgcggc catcgtgctc gtgggtctgg ccattctgct 2581 gctctggaag ctgctcacca ccatccacga tcgccgcgag ttcgcccgct tcgaaaagga 2641 gcgcatgaac gccaagtggg atacgggcga gaatcccatc tacaagcagg ccacctccac 2701 cttcaagaac cccatgtatg cgggcaaata aatccgatat ctaactaaat attagggaaa 2761 tgtaaactgt ctgtgcttga accggaaatc agaaaaccaa ccaccaaaca aatccacaag 2821 aaaccaatct tcagaacact tcgacgaagc tgctttgccc cgggtgcaaa accactaaag 2881 tcaactgcca ttgaaacgcg ttctaaacta agtcaacctt acatatatat atatttatat 2941 atacatttac acaagagcct ttatacattg cgtatactta acgagcaaac gatttgtgcc 3001 ttgcaacata ttttagatta tatctatacg tatataaacg agcaagagaa cagacaacgc 3061 acagcagcca gaaaagaaaa aaataataag aaataacagc caacaaatga gccacgaacg 3121 atagttagaa atacgatttt tgtgttcttt attgtgccca tagtatccaa gtatccaagc 3181 cagcacatga atttgtattt tatttttgac tcttaatttg taatttgtat tttttgtttt 3241 gtgtttccct tactgttccc taatttttat cattaacgag aagccactgc aatatagtga 3301 tgtatttaac cgaaagcgaa accgaaatcg aaactagaaa tgggatactt aactgatact 3361 gatctgctac cctcccaaaa aacccctgtc taaatgtttt tctattgttt ttaaagctaa 3421 ctttacaatt aatatttaag caattaacat ttaagcttgt aattgttaat ttcgaaatgc 3481 aagagtgccc cagggacaat ttgtttttct gtggaatctt tacattttta cttttgtacg 3541 ttttatttat caagaaaaag aagagggcag aaaggatgac gagggaaacc gcgtggaata 3601 tagtctcttg tgtgtgtttt ttgttttatt gaatttcgac cattaatagt aaattaatac 3661 tactatataa atatatattt tttgccattt gtactgatta ctgattaaca tttaaagtaa 3721 tgcgaaaaca aaacaagaac ttttgtataa aaaaaaggaa aattattttg agtaatttta 3781 ttgaatgaaa acccatatga agtggaaaca ctagcaatat aaaacgatgt ggaaattaaa 3841 ttgtttgacg ctaattttag tgaaataaat aaaagtaaat tataaaaaaa gacaa