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LOCUS XM_017139201 3945 bp mRNA linear INV 09-DEC-2024 subunit myospheroid (mys), transcript variant X1, mRNA. ACCESSION XM_017139201 VERSION XM_017139201.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139201.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3945 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3945 /gene="mys" /note="position-specific antigen beta subunit myospheroid; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108055738" CDS 241..2781 /gene="mys" /codon_start=1 /product="integrin beta-PS isoform X1" /protein_id="XP_016994690.2" /db_xref="GeneID:108055738" /translation="MILERNRGSQVALLLVVLLAAIAAQTGAQKSGKLTTTGTSCASK LRCNTCIQVEGCGWCLDIDFKGQSRCYQNGTQKCDNQWFPQNLEKILLNEELTAESSG SSSGFSGSSGYSIESGSSGSSGSSSSSGHFSQNSGGSISGSGAHRSSGKIVQIQPQSL KLSLRVNQKHNLRVSYSQAVGYPVDLYYLMDLSKSMEDDKQSLSKLGDKLSTAMKEIT SNFRLGFGSFVDKVLMPYVSTIQKKLDHPCDNCKAPYGYHNHMPLNNNTESFSEEVKG AQVSGNLDAPEGGFDAIMQAIACRSEIGWRNESRRLLVFSTDAGFHYAGDGKLGGVIA PNDGECHLNAQGEYTHSIYQDYPSISQINQKVKDNAINIIFAVTANQLSVYEKLVEHI QGSSAAKLDNDSANVVDLVKSEYDKISSSVEMKDDASSYVKINYFSSCLGNGTPVATN KCEKVKQGTKVTFNAEIQLLKCPEDPRDWHQTIRISPVGINEYMEIQLEMLCSCPCEH SGSQGYEANASICNGHGTSMCGICQCDENHFGNKCECNAMDINSKNGNDASCRADNTT LTDCSGRGNCVCGTCDCHKRPNPEEEVSGKFCECDNFSCERNKNQLCSGPDHGTCECG QCKCKPGWGGTNCGCLESTDSCLAPGSTELCSGHGACECGVCKCTATEQGRYSGRFCE KCPTCSGRCQELKDCVQCQMYKTGVLKNGDDCANNCTLFTPVGVEKVEIEEHKDEQIC TFFDEDDCKFMFKYSEDGQVLKVSAQENKECPPKVFMLGIVLGVIAAIVLVGLAILLL WKLLTTIHDRREFARFEKERMNAKWDTGENPIYKQATSTFKNPMYAGK" misc_feature 379..1752 /gene="mys" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057" /db_xref="CDD:469594" misc_feature 1771..1848 /gene="mys" /note="Integrin beta epidermal growth factor like domain 1; Region: I-EGF_1; pfam18372" /db_xref="CDD:465729" misc_feature 2155..>2289 /gene="mys" /note="Domain of unknown function (DUF3844); Region: DUF3844; pfam12955" /db_xref="CDD:432898" misc_feature 2311..2565 /gene="mys" /note="Integrin beta tail domain; Region: Integrin_B_tail; pfam07965" /db_xref="CDD:462325" misc_feature 2647..2769 /gene="mys" /note="Integrin beta cytoplasmic domain; Region: Integrin_b_cyt; pfam08725" /db_xref="CDD:462580" polyA_site 3945 /gene="mys" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttattaatc gcatcgcatt ctgttccgct gttccgttcc aacaagacaa agcaagagta 61 aattaattta atccaaattc aattcccgac tcccgcagtc gaagttattt tttttgtgcc 121 cccaaaagag ttgaattcgc cgactgggcg aaaaacgccg gcgcacggaa gagacaggga 181 tagagcacct agcactcgca ctcgcacaga catcctgcat caacctacac ccacacagcc 241 atgatcctcg agagaaaccg ggggagccag gtggcccttc ttctggtcgt cctgctggcg 301 gccatcgctg cccaaacggg ggcccagaaa tccggcaaac tgacgacgac cgggacttcc 361 tgcgcctcca agctgagatg caacacctgc atccaggtgg agggatgcgg ctggtgcctg 421 gacatcgact tcaagggcca gtcacgttgc taccagaacg gaacccaaaa gtgcgacaac 481 cagtggttcc cgcagaacct ggagaagatt ctattgaacg aggagctgac cgccgagtcc 541 agtggatcct ctagtggctt cagtggatcc agtggctatt ccatcgagag cggcagcagc 601 ggcagcagcg gcagcagcag cagttcgggc cactttagcc agaactccgg cggctcgatc 661 tccggcagcg gggcgcacag gtcctcgggc aagatagtcc agatccagcc gcagtccctg 721 aagctctcgt tgcgcgtcaa tcagaagcac aacctcaggg tcagctactc ccaggcggtg 781 ggctatcccg tggatctcta ctacttgatg gacctctcca agtccatgga ggacgacaag 841 cagagtctct ccaagctggg cgacaagctg tccacggcca tgaaggaaat cacctccaac 901 ttccgcctgg gcttcggttc gtttgtggac aaggtgctca tgccctatgt ctcgaccatt 961 cagaagaaac tcgatcatcc ctgcgacaac tgcaaggctc cctacggtta ccacaatcac 1021 atgccactca acaataacac cgaaagcttc tctgaagagg tgaagggcgc ccaggtgtcg 1081 ggcaatctgg atgctccgga gggcggattc gatgccatta tgcaggccat tgcctgtcgc 1141 tcggaaatcg gctggcgcaa cgagtcccgt cgcctgctgg tcttctccac ggacgccggt 1201 ttccattatg ccggcgacgg caagctgggc ggagtgattg cccccaacga cggcgagtgc 1261 catctgaatg cccagggcga gtacacgcac tccatttacc aggactaccc gagcatctcg 1321 cagatcaacc agaaggtcaa ggacaatgcc atcaacatta tcttcgcggt gaccgccaat 1381 cagctgtcgg tctacgagaa gctggtggag cacattcagg gctcctcggc cgccaagctg 1441 gacaacgact cggccaacgt ggtggatctg gtcaagagtg aatacgataa aatctcctct 1501 tcggtggaga tgaaggacga cgccagttcg tatgtgaaga tcaactactt ctcctcctgc 1561 ctgggcaacg gaaccccagt ggccaccaac aagtgcgaga aggtgaagca gggcaccaag 1621 gtgaccttca atgccgagat ccagctgctc aagtgccccg aggatccgcg cgactggcac 1681 cagaccatcc gcatttcgcc cgtcggcatc aacgagtaca tggagatcca gctggagatg 1741 ctctgctcct gtccctgcga gcattccggg tcgcagggct acgaggcgaa tgcctcgatc 1801 tgcaacggcc acggcacctc catgtgcggc atctgccagt gcgacgagaa tcactttggc 1861 aacaagtgcg agtgcaatgc gatggacatt aactcgaaga acggcaacga cgcttcctgc 1921 cgggcggaca acacgacgct gacggactgc tcgggtcgcg gcaactgcgt ctgcggcacc 1981 tgcgactgcc acaagcgtcc gaatcccgag gaggaggtgt ccggcaagtt ctgcgagtgc 2041 gacaacttta gctgcgagcg gaacaagaac cagctgtgct cgggccccga tcacggcacc 2101 tgcgagtgcg gccagtgcaa gtgcaagccc ggctggggtg gcaccaactg cggctgcctg 2161 gagtccacgg acagctgttt ggcgcccggc agcacggaac tctgctccgg ccacggcgcc 2221 tgcgagtgcg gcgtctgcaa gtgcacggcc accgagcagg gacgctactc gggcaggttc 2281 tgcgagaagt gccccacctg ctcgggtcga tgccaggagc tgaaggactg cgtccagtgc 2341 cagatgtaca agacgggcgt gctgaagaac ggcgatgact gcgccaataa ctgcactctg 2401 ttcacgcccg ttggcgtgga gaaggtggag atcgaggagc acaaggacga gcagatatgc 2461 accttcttcg acgaggacga ctgcaagttc atgttcaagt acagcgagga tggacaggtg 2521 ctcaaggtct ccgcccagga gaacaaggag tgtccgccca aggtcttcat gctgggcatt 2581 gtcctgggcg tcattgcggc catcgtgctc gtgggtctgg ccattctgct gctctggaag 2641 ctgctcacca ccatccacga tcgccgcgag ttcgcccgct tcgaaaagga gcgcatgaac 2701 gccaagtggg atacgggcga gaatcccatc tacaagcagg ccacctccac cttcaagaac 2761 cccatgtatg cgggcaaata aatccgatat ctaactaaat attagggaaa tgtaaactgt 2821 ctgtgcttga accggaaatc agaaaaccaa ccaccaaaca aatccacaag aaaccaatct 2881 tcagaacact tcgacgaagc tgctttgccc cgggtgcaaa accactaaag tcaactgcca 2941 ttgaaacgcg ttctaaacta agtcaacctt acatatatat atatttatat atacatttac 3001 acaagagcct ttatacattg cgtatactta acgagcaaac gatttgtgcc ttgcaacata 3061 ttttagatta tatctatacg tatataaacg agcaagagaa cagacaacgc acagcagcca 3121 gaaaagaaaa aaataataag aaataacagc caacaaatga gccacgaacg atagttagaa 3181 atacgatttt tgtgttcttt attgtgccca tagtatccaa gtatccaagc cagcacatga 3241 atttgtattt tatttttgac tcttaatttg taatttgtat tttttgtttt gtgtttccct 3301 tactgttccc taatttttat cattaacgag aagccactgc aatatagtga tgtatttaac 3361 cgaaagcgaa accgaaatcg aaactagaaa tgggatactt aactgatact gatctgctac 3421 cctcccaaaa aacccctgtc taaatgtttt tctattgttt ttaaagctaa ctttacaatt 3481 aatatttaag caattaacat ttaagcttgt aattgttaat ttcgaaatgc aagagtgccc 3541 cagggacaat ttgtttttct gtggaatctt tacattttta cttttgtacg ttttatttat 3601 caagaaaaag aagagggcag aaaggatgac gagggaaacc gcgtggaata tagtctcttg 3661 tgtgtgtttt ttgttttatt gaatttcgac cattaatagt aaattaatac tactatataa 3721 atatatattt tttgccattt gtactgatta ctgattaaca tttaaagtaa tgcgaaaaca 3781 aaacaagaac ttttgtataa aaaaaaggaa aattattttg agtaatttta ttgaatgaaa 3841 acccatatga agtggaaaca ctagcaatat aaaacgatgt ggaaattaaa ttgtttgacg 3901 ctaattttag tgaaataaat aaaagtaaat tataaaaaaa gacaa