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LOCUS XM_017139197 8138 bp mRNA linear INV 09-DEC-2024 (fs(1)h), transcript variant X8, mRNA. ACCESSION XM_017139197 VERSION XM_017139197.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139197.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8138 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8138 /gene="fs(1)h" /note="female sterile (1) homeotic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055736" CDS 1185..7385 /gene="fs(1)h" /codon_start=1 /product="homeotic protein female sterile isoform X3" /protein_id="XP_016994686.2" /db_xref="GeneID:108055736" /translation="MSSSEPPPRYEPPVEPVNGIVQPPVMPPAERPGRNTNQLQYLIK TVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPVTAKGGKKKQR APATPKSSSTPGGGGASTGGGSGTASSAAVSSGAGSGSAKVSAAASSAQQSGLQGATA GVGGGAASTAGTQAGSGGAGGATAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVPG STNTTTTAMAGGAGGGAGAAAANPNAAALMASLLNAGQTGGYPGAPGQTAVNSSSLLD GSTAAVAAAAAAAAAAAAAAGAGGAAGSAGGAAGAGVTIPAVNVNAANAVQAYVNAGV SVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQD LTFQGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSK KHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLI FTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHAHSH GHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSDEERSAKLKMLESKLLGLQ EEIRKLSEEASAKKKAKKKLKEKKKSMGGGSGSGSASHHGHASGGGANAGGAGANSGG HAGGVSVPGGGVGGLGAGGAGGANLSALLSGSLVGPGGAAVAGGVPNVGALHSQVHDV AMAFGQLAGGGASAGGGGFGAGVTASGASAGGKAGTLAGALAAGAAAGAGGTTGSGSG SSKGAKSKGGRGAKGSGGGGGVGGSNNAAAANSAGGAAGAAAGGAGAVGAVGGAGAAG GGGNASKRAKGSSSAGAGGAVGGANASTGGAGARGSSKKKPSQVMNFDSEEEDTAKPM SYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELE SYVASCLRKKTHKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKTAKKDESASNK VEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSNGSNV NNPSINVVLGGNHPSGALTPTTLLMGLDHVVNSNTPTSQISNLLGNANPLTAAAMLNN NNKTSLPGSNFGGAPTPGAGGNMLHAGGGGAAVSAATGQQQQQQQHNKNGPNDLSKVP PGGSITAALPPHSFGGAGGGGGAAGAAAIVGGNQSSGGIRIASNLHKPSGLGGGGGGG DLGEHHAALAAALTSGVNSTGTAGNNNGGSSNNNTNPLGGSHGDAMANASLASGLKQI PQFDDPVEQSLASLEFSAGSTGKSSLTDNFLIQQHLMQPAGPQQQQQQQQQQPFGHQQ QQQQQHMDYVTELLTKGAENVGGMNGNHLLNFNLDMAAAYQQKHPQQQQQQQQQQQAH NNGFNVADFGMAGFDGLNMTAATAFLDLEHTLQQQQMQQMQLQQQQHQQQQQQTHQQQ QQLSQQQLQQQQQQLTQQQQLQQQQQQFQQQHQQQLHQQQQQQQVANKLLIIPKPIES MMPSPPDKQQSQQHQKVLPPQQSPSDMKLHPSQAAAAAAQGKLAQAFKAANEQNLKNA SSWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDRLKLLEAAEKEKKNQ KEAAEKEQQRKHHKSSSSSSSSSSAAAAQAAAVAAATAAAAAAALGAAAAAAVASNAS NASGGSSSGGGGGGESRSQAISGERERDRDRERERERSGSGGGQSGNGNNSSNSANSN GPGSAGSGGSGGGGGGSGPASAGGPNSGGGGNANSNSGGGPALLNAGSNSNSGVGSGG AASSNSNSSVGGIVGSGGPGSNSQGSSGGGGGGGGPASGGMGGGALDYGQQVAVLTQV AAHAQAQHVAAAVAAQAILAASPLGAMESGRKSVHDAQPQISRVDDIKASPGGQGQSS PAQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 1284..1604 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(1371..1373,1392..1394,1401..1403,1518..1520, 1530..1532,1548..1550) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 2385..>3005 /gene="fs(1)h" /note="Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]; Region: COG5076" /db_xref="CDD:227408" misc_feature 2667..2969 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(2745..2747,2766..2768,2775..2777,2892..2894, 2904..2906,2922..2924) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 4095..4289 /gene="fs(1)h" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <7320..7382 /gene="fs(1)h" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" polyA_site 8138 /gene="fs(1)h" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcgtgcccgt cggccgtcca tgtgtgcgtg tgtattcgca ttttcagtaa tttcgaaaaa 61 aaattttgta tatttgatgg cgacagcgac tgttactcac aagaaactcg cgcgtttgtc 121 gaaaaatcgt agcgcgtacg tatatatcgg tgtgtagaaa ttactaaaaa ttatgttgca 181 actttttaac agtcgtgtac aatctgcatg ttgtatatgt tcaatttaaa tacaacaaca 241 atagcaacaa cgcaaacgca acacagtttt aagcaacaac aaacaaacaa caaccaaacc 301 gacaagctaa acttggctaa agcaacaaca agcagcacac ccaacaacaa aagcaacaac 361 aaacaccacc agcagtagca gcgcggccat aaacaaaagt caaaatcaaa aaacattcgg 421 atatattcgg atattatcgc ccataaacgg ataaggtgca acagaacgtg tggatttcac 481 taaagataac taggaaaata gaggaaatcc gaaggaaata tttacagcca gtcgcctgct 541 ggaatattgc gactaatagc gaaggattca aagccacaat gcctctggta gcagtcgttg 601 ttgtaccatc cttggccctc ggatcagcta aagccagtcg attccaatga gaggagcctg 661 ggccctgaga atctggagca ggcgagtgca cagacattgc tgagcatgaa gcatcataca 721 ctacggacca ctacacagca ttatcccttg aacaagaaga gatttctatc agaaagcaga 781 aaggcaccag gagcaacagg atcaggcgga ggatcaccag gagtaggagt cgtcgcagga 841 gtcgcaggaa cagccggaga agaaggcgca gccagtcgca ggaggaggag gtggtcaccg 901 gccacataag actagtcccc cccctcccta aacccactga atcccctccc aattgcccgc 961 gcaaaaggag aaccgaaagg aggagcgaag cggaggacaa ggaggagcgc aggaggagac 1021 ggagacggcc cgtgtgtgtg tgtgtgtgtg taggtggagt gtgtgtgtcg gccgtctcag 1081 tcggataagc atcaggcatc attcagattc agatcaagat ccccaaccca aactgaagca 1141 ccagaaccac cagaagaaca gcaaccacca ccaccaccac caccatgtcg tccagtgagc 1201 caccgcctcg ctacgagcca cccgtggagc cagtcaatgg cattgtacag ccaccggtga 1261 tgccgccagc ggagcgaccc ggccgcaata cgaaccaact gcaatatctg atcaagacgg 1321 tgatgaaggt gatatggaag caccacttct cgtggccctt tcaacagccc gtcgatgcca 1381 agaagctcaa cctgcccgac taccacaaga tcatcaaaca gcccatggac atgggcacga 1441 tcaagaagcg gctggagaac aactactact ggtccgccaa ggagaccata cacgacttca 1501 acacgatgtt caacaattgc tatgtctaca acaagcccgg cgaggatgtc gttgtgatgg 1561 cccagacgct cgagaaggtc ttcctccaga agatcgaatc gatgcccaag gaggagctcg 1621 aactggagcc ggtaacggcc aagggcggca agaagaagca acgggcgccg gctacgccca 1681 agtcatcgtc aacgcccggc ggcggtggag catccaccgg tggtggctcc ggtacggcct 1741 cctcggcggc cgttagcagc ggagctggta gtggctccgc caaagtctcg gccgccgcct 1801 catccgcgca acagtccggc ctgcagggag cgacggcggg agtgggcggc ggtgcggcga 1861 gcacagcggg aacccaggcg ggttccggag gagcgggagg agcgaccgcc gcccgacccg 1921 tttccgccat gggcggcacg gtttcatcga cggccggcgg tgcaccgtcc ataccaccga 1981 ttagcacaat gccaccgcac acggtaccgg gcagtaccaa tacgacgacg acagcgatgg 2041 ccggcggcgc tggcggagga gcaggtgcgg ctgcggccaa tcccaatgcc gccgccctca 2101 tggccagcct gctgaatgcg ggccaaacgg gcggctatcc cggcgcaccc ggtcagacgg 2161 cggtgaatag ctcctcgctg ctggatggca gcacggccgc agttgcggca gcggcggcag 2221 cagcagcagc agcggcggcg gcggcgggag cgggcggagc agcgggatcc gccggtggag 2281 cagcgggcgc cggagtgaca ataccagccg tgaacgtcaa tgccgccaac gccgtgcagg 2341 cctatgtgaa tgcgggcgtg agcgtcggag tggacgccgt gataccgccg cagcagcccg 2401 ccaaaataaa gaagggcgtc aagcggaagg cggacacaac gacgccgacg gccaatgcct 2461 ttgaatcgcc ttacgcgcaa atggactcca aatcggccaa gattgcgacg cggcgggagt 2521 cgaatcgtca ggatcttaca ttccagggct cgggatacaa catgtcgccg ctgggcgtct 2581 ccggagttcc cggacttggc ggtctggttg ccggcggcgt cgccggcgtg gcggtggcca 2641 agaacaagga gaagctatcc gatgcgctca agtcgtgcaa cgagatcctc aaggagctct 2701 tctcgaagaa gcactcgggc tacgcctggc ccttctacaa gccggtggac gcggaaatgc 2761 tcggcctgca cgactaccac gacatcatca agaagcccat ggatctgggg actgtcaagc 2821 ggaaaatgga caatcgcgag tacaaaagcg cgccggaatt cgccgccgac gtgcgattaa 2881 tattcaccaa ctgctacaag tacaatccgc cagatcacga tgtcgtggcc atgggtcgca 2941 agctgcagga cgtcttcgag atgcgctacg ccaacatccc cgacgagccg gtggccaatg 3001 cggcccacca ccacggacac ggccacgggc acggccatgg ccacgcccac agtcacgggc 3061 atggtcacgg ccacggtcac ggtcacggct acggcggatc ctcctcactc aagcacgatg 3121 ccagcgattc gtccagcgag gactccagcg acacggagaa cgaatcgaac tcggacgagg 3181 agcgcagcgc caagctgaaa atgctcgagt ccaagctgct cggcctgcag gaggagattc 3241 gcaagctgtc cgaggaggcc tccgccaaga agaaggcgaa gaagaagctc aaggagaaga 3301 agaagtcgat gggcggtggc tccggttccg gttcagcctc tcatcatggc cacgcctcgg 3361 gcggcggtgc gaatgccggt ggagcaggcg ccaattccgg cggtcatgcg ggcggcgttt 3421 ccgtgcccgg cggcggcgtc gggggcctgg gtgccggcgg agcgggcggc gctaatctca 3481 gtgccctgct cagcggctcg ttggtcggtc ccggcggagc agccgtcgcc ggcggcgttc 3541 ccaatgtggg agcactgcac agtcaagtgc acgacgtggc catggccttt ggccagctgg 3601 cgggaggcgg tgcctcggcc ggcggcggcg gctttggtgc aggagtgacg gcatcgggag 3661 cctcggcggg cggcaaggcg ggcaccctgg ccggcgctct ggcagcgggc gcagcggccg 3721 gagccggcgg cacaactggc agcggcagtg gcagcagtaa aggtgctaag agcaagggcg 3781 gacgaggcgc caagggcagc ggaggcggcg gcggcgttgg aggtagcaat aatgccgctg 3841 cggccaattc cgctggcggt gcagcgggag ctgctgcggg cggagccgga gccgtgggag 3901 ctgtgggcgg cgctggagca gcaggcggcg gcggcaacgc ctccaagcgg gccaagggca 3961 gcagttcggc cggtgcgggc ggcgctgttg gcggtgcgaa tgccagtacc ggtggcgccg 4021 gggcgcgcgg cagcagcaag aagaagccca gccaggtgat gaacttcgac tccgaggagg 4081 aggacacggc caagccaatg tcgtacgatg agaagcgcca gctgtcgctc gacatcaaca 4141 agttgccagg cgacaagctg ggccgtgtgg tacacatcat ccagaaccgg gagccatcgc 4201 tgcgtgactc caatcccgac gaaatcgaga tcgacttcga gacgctgaag ccgtcgacgc 4261 tgcgcgagct tgaaagctat gtggcgtcgt gtttgcgcaa aaaaacacat aaaaagcctt 4321 ccggcaagtc gaaggacgag cagatggccg agaaaaagca ggagctggaa aagcgcctgc 4381 aggacgtcac cggccagctg ggggcaagca agaaaaccgc caagaaagat gagtccgcct 4441 cgaacaaggt cgaggcagtg cagccggcga atcccgtgtc atcgagttcc agttccagcg 4501 attcatcgtc gtcgagttcg agtgatagca gttcgagtga ctcgagcgac agtgaagcag 4561 gtgatggtga cgagcgaccg ccccgcaaga aaaaatcccg agactcgaat ggaagcaatg 4621 taaataatcc aagtataaat gtggttctgg gcggcaacca tccgagtgga gcgcttacgc 4681 cgacgaccct gttgatgggc ctggaccatg tggtgaactc caacacgccc acatcacaaa 4741 tatccaacct gctgggcaat gccaatcccc tgacggcagc tgccatgctg aacaataaca 4801 acaagacatc gctgccgggc agcaatttcg gtggtgcgcc cactcccggc gccggtggta 4861 acatgttgca cgccggcggc ggcggtgctg cagtttcggc ggcgacgggg cagcagcagc 4921 agcagcagca gcacaacaag aatggaccaa atgatctgag caaagtgccg ccgggtggct 4981 ccatcaccgc cgccctgccg ccgcacagtt tcggaggagc cggcggagga ggaggagcag 5041 ctggagcagc ggcaattgtg ggcggcaatc agtcgagcgg cggcatacgc atagccagca 5101 atttgcacaa gccttccggc ttgggaggcg gcggcggcgg cggtgatctg ggcgagcatc 5161 atgcggcact ggcggctgcc ctgacgtccg gcgttaacag caccggcact gccggcaaca 5221 acaacggcgg cagcagcaac aacaacacca atccactggg cggatcgcat ggggatgcga 5281 tggccaatgc ctcgctggcc tctggcctca aacagatacc gcagttcgat gatcccgtcg 5341 agcagtcgct ggcctcgctg gagttcagcg ccggttccac gggcaagtcg tcgctgacgg 5401 acaacttttt gatacagcag cacctgatgc agcccgccgg accgcagcaa cagcagcagc 5461 agcagcagca gcaacccttt ggccatcagc agcagcaaca gcagcagcac atggactacg 5521 tgacggagct gctgaccaag ggggcggaga atgtgggcgg catgaacggg aaccacctgc 5581 tgaactttaa cctggacatg gcggcggcct accagcagaa gcatccccag cagcagcagc 5641 aacagcagca gcagcagcag gcgcacaaca acggcttcaa tgtggccgac ttcggcatgg 5701 ccggattcga cggccttaac atgacagcgg ccacagcatt cctcgatctg gagcacacgc 5761 tccagcagca acagatgcag cagatgcagc tgcagcagca gcaacaccag cagcaacagc 5821 agcagacgca ccagcagcag cagcaactaa gccagcagca gctgcagcag caacagcagc 5881 aactgacgca gcagcagcag ctgcagcaac agcagcagca attccagcag caacaccaac 5941 agcagctcca ccagcagcag cagcagcagc aggtggccaa caagctgctg atcataccca 6001 agcccatcga atcgatgatg cccagtccgc cggacaagca gcagtcgcag cagcaccaga 6061 aggtcctgcc gccgcagcag tcgccctcgg acatgaagct gcatcccagc caggcggcgg 6121 cggcggccgc gcagggcaag ctggcgcagg ccttcaaggc ggccaacgag cagaacctga 6181 agaacgccag ctcgtggtcc tcgctggcct cggccaactc tccccagtcg cacacgtcga 6241 gcagctcgag cagcagcaag gccaagccgg ccatggactc gttccagcag ttccgcaaca 6301 aagccaaaga acgcgaccgt ctcaagctgc tggaggcggc cgagaaggag aagaagaacc 6361 agaaggaggc cgccgagaag gagcagcagc gcaagcacca caagtcctcc tcctcctcgt 6421 cctcgtcgtc ctcggccgca gcagcccagg cggcagccgt tgcagccgcc acagcagcag 6481 cggcggcggc ggccctggga gcagcagcag cggctgcagt ggcctccaat gcctcgaacg 6541 cctcgggcgg cagcagtagc ggaggcggcg gcggcggtga atccagaagc caggcgatca 6601 gcggcgaacg cgagcgtgat agggaccgcg agcgggaacg tgagcgctcc ggcagcggtg 6661 gcggccagtc cggcaatggg aacaacagca gcaactcggc caacagcaac ggacccggca 6721 gcgcgggcag cggcggcagt ggcggcggcg gcggaggcag cggaccagcc agcgccggcg 6781 gaccaaacag cggcggcggc ggcaatgcca acagcaacag tggcggcgga ccggcgctgc 6841 tcaatgccgg cagcaatagc aacagcggcg tgggcagcgg tggcgccgcc agcagcaaca 6901 gcaacagcag cgtcggcggc atcgtcggca gcggcggacc cggctccaat agccagggca 6961 gcagcggtgg cggcggcggc ggcggaggac ctgctagcgg cggcatgggc ggcggggccc 7021 tcgactacgg tcagcaggtg gcggtgctaa cgcaggtggc ggcacacgcc caggcgcagc 7081 atgtggcggc cgctgtggcc gctcaggcga ttctggcggc ctcgcccttg ggcgccatgg 7141 agagcggaag gaaaagcgtt cacgatgctc agccgcagat atcgcgggtg gatgacatca 7201 aggcgtcgcc gggcggccag ggacagagtt cgccggcaca gcaatcgccg caggatcggg 7261 cggccgccaa acgtgccgag cagcggcggg ccgagcagga gcggcgcagg cgcgaagcgt 7321 tggctggcca aatcgatatg aacatgcaga gcgatctcat ggccgccttc gaggagacgc 7381 tgtaggccaa ggcccggaga aagtcgacca accgggccgt aggcgtcagc ggcatcacct 7441 caactacaac caccacctca tcatcctcca gcccatcgag gcggcggaca aggcgccagc 7501 cacggaccac gttggacaac ggcctgcaat agcagaagca acacggctag gacagcaaca 7561 acgacgacag ttcggcatat ggaactgttg gagcaaacag aaaacaacca acaaccaagc 7621 aaccaacaaa taaaagaaac aaacagcata ggctaaaacc aataaagcaa tgttctaagg 7681 cgtaattaaa atacgtacat ttagtgagta tatatataat gcatatacgg aaggagcgag 7741 caaacaaaaa gcaaaatgca aaaagcaaaa tgcaaaaagc aacatccacc agcaaacaaa 7801 aacataaaca taaagaaaaa caaaaacaaa aacaatacat aacagaatat ggcaaatttc 7861 cttcggttag caattgattc ttcgcaactt ttttcaaatc actttcgatt attattgcgt 7921 attactatta caatgatgat aatggatcgt ggcgacaagg atgtccgcac atggttccaa 7981 agcttattat ttttaatatt attgattgca taggcaagtt tagttcgtag ctatacactt 8041 aattaataat gcttattttt tttcttaatt gtaacacaca cctatgctta gagttgttaa 8101 ctaatttaaa aagaaaaaaa ccaacaaaca agaaaaac