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LOCUS XM_017138887 3283 bp mRNA linear INV 09-DEC-2024 (LOC108055519), mRNA. ACCESSION XM_017138887 VERSION XM_017138887.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017138887.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3283 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3283 /gene="LOC108055519" /note="nuclear exosome regulator NRDE2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055519" CDS 214..3225 /gene="LOC108055519" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_016994376.2" /db_xref="GeneID:108055519" /translation="MSLFPAYGNSPAAVSAKETPEKPAKETATTGEDWRNNRSYDKKD IDDGDIATRGAKSDSSTSSDSSEEEEEEKDKDQEQKKPGAKKKDQPQGKPLEFDAKDE FYVDKKGNMSFRSLSKLTKPTRPRYKSRMRRLRDPEVKPTERAGRSKLSSSKSSRYTA RKPLPTEAPTAEEKSQLQEQLMQTRVLVQREPKVLDHWLQLHRLLDLNLDRANRLAVA EQELHHLETALEHHPSNEQILRLYTDVANATYPASEVAARFEKMLEKNPFEYTLWTSL IMVTQGNMARCSVPAVLRIYAFSMRRMQVGHTDEQSRKFATVDTDRIMLKLFHNCVLF LRQSGNMNKMFALLRLEMELNFPGLTVDCFEACTANEESLIEYEEMVLRSGMPMPEIW TRVERLRQAYCYLPYPPLAASAQDEVERGLDSQRCIYSDDVVPYAHALKSPNNRLHLL LLVVQLTKMPLVRSSCLAEKLNPCIDEFGESEAIEMLFAGLADRPTYAVPPSVQQAEF EAALINLAKELSVTPSFMPHFMGHELYGRTISDLLLKCIEAFAAEGEELKRHVFLLLW LRFQRLLVVLHKLMGKLTKEYLSETRRRIRNQMIKPENRCVPRFFTELAMCVFEGQEV DDNRNRAFDIFEKIIQQDFDSDKPSRDEMYAYLVCSEMLIRRGRWSEAIHLLRCTSMG RHAASMPQTPCLELSLRTGLELLAVEVQQLDSLPAEMPLEEYFLPNRLIMLLRVRCLL WRLDARNAQPDSLFDKLLTYPLGPKEAKASEWRRFLREQVMEVQIMQMQLPIPREEDR GAEEGNVKDKGGKSKRLDELVELGLEEFPRNLLMLQTFSGFKTMLWHKQRARFIRTEA GIVSLLHWVLAANTRFANTGGHDELLASMAGCLHMAVRNRLINMFQTFLPTKAGRSEI EEEQYRILRRNSIYWRLYLKCLTDTRTSFERTKEALLMAIDECPWDKALLMDGATALP KEQSFLQDLMTEKEMRVYALAEELDMLRSGH" misc_feature 775..>1326 /gene="LOC108055519" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:462472" polyA_site 3283 /gene="LOC108055519" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taaacaaaca aatttgtaat ttaatcattt aatttttacg tttttcgtgc acttaattta 61 aaatttgact gaccccggtt cgaaaatgtt ataacaattg tatgagacta aaatacaata 121 ttagacatta gagctctggc caatgcgaat tactaaatat tcgtaaatac atttttttgt 181 ttagtgaatt aagtgataaa ttaattgctg agcatgtctc tttttcccgc ctacggcaat 241 tccccggcgg ccgtgagtgc gaaagagact cccgagaagc cggcgaaaga gacggcaaca 301 acgggcgagg attggagaaa caacaggagt tacgacaaaa aggatataga cgatggggat 361 atagcaacta ggggagcaaa atcggacagc tccacgagca gcgactcctc cgaagaggag 421 gaggaggaaa aggataagga tcaggagcag aagaagccag gagccaagaa aaaggatcaa 481 ccgcaaggaa aacctctaga attcgatgcc aaagatgagt tctatgtgga caaaaagggc 541 aacatgtcct tcaggagcct ttccaagctg acgaaaccca cacgaccgcg ttacaagtct 601 cggatgcgac gtctccggga tccggaggtc aagccaactg aacgggcggg tcgctccaag 661 ttgtcctcct ccaagagcag tcgctacacc gccaggaaac ccctccccac cgaggcgccc 721 accgcggagg agaagtccca gctgcaggag cagctcatgc agacccgggt gctcgtccag 781 cgagagccca aggtgctgga ccactggctg cagctccacc gcctgctgga tctcaacttg 841 gacagggcca accggctggc ggtggccgag caggagctgc accacctgga aacggccctc 901 gagcaccatc cctccaacga gcagatcctg aggctctaca cggacgtggc caacgccact 961 tacccggcca gtgaggttgc ggcacgcttt gagaagatgc tggagaagaa ccccttcgag 1021 tacacgctct ggacctcgct gatcatggtc acccagggca acatggcgag gtgctccgtg 1081 ccggcggtgc tccggatcta cgcgttcagc atgcggcgca tgcaagtggg acacacggac 1141 gaacagagtc gcaaatttgc caccgtggac acggatcgca tcatgctgaa gctcttccac 1201 aactgcgtgc tgtttctgcg ccaatcgggc aacatgaaca agatgtttgc cctgctgcgc 1261 ctggaaatgg agctgaattt cccaggccta acagtcgatt gcttcgaggc ctgcaccgcc 1321 aacgaggaat cgctgatcga gtacgaggag atggtgctgc gatcgggcat gccgatgccg 1381 gagatctgga cgcgagtgga gcgtctgcgc caggcctact gctacctgcc ctatccgccg 1441 ctggccgcct cggcgcagga cgaggtcgag cggggactgg atagccagcg gtgcatctac 1501 agcgacgacg tggtgcccta tgcccatgcc ctcaagtcgc caaacaatcg cttgcatctg 1561 ctgctcctgg tggtccagct caccaagatg ccgctcgttc gcagctcttg tttggcggag 1621 aaactaaatc cctgcatcga cgagttcggc gagtcggagg ccattgagat gctcttcgcc 1681 ggcctggccg acagacccac ctatgccgtg ccgccaagtg tccagcaagc tgagttcgaa 1741 gcagccctca tcaatttggc caaggagctg agcgtaacgc ccagcttcat gccgcacttc 1801 atgggccacg agctgtatgg gcgaaccata agcgacctgc tgctcaaatg catcgaagcc 1861 ttcgccgccg agggcgagga gctcaagcgc cacgtgttcc tgctgctttg gctgcgattc 1921 cagcgactcc tcgtcgttct gcacaaactg atgggcaaac tgaccaagga gtatttgagc 1981 gagacgcgcc gcaggattcg caaccagatg attaagccgg agaatcgttg cgttccacgt 2041 ttcttcaccg aactggccat gtgcgtgttc gagggccaag aggtggacga caatcggaac 2101 cgggccttcg acatattcga aaagatcatc caacaggact tcgactcgga caagccttcg 2161 cgggacgaga tgtacgccta tctggtttgt tcagagatgc tgatacggcg cggtcgctgg 2221 agcgaggcca tccatctgct gcgctgcacg tcgatgggca gacatgccgc ctcgatgccg 2281 caaacacctt gtcttgaact gagtctgagg actgggctcg agttgctggc ggtggaagtg 2341 caacagctcg actcattgcc cgccgagatg cctttggagg agtacttcct gcccaaccgg 2401 ctgattatgc tgttgcgcgt gcgctgtttg ctctggcggc tggacgctcg caacgcgcag 2461 ccagacagcc tgttcgataa gctgctgacc tatccactgg gccccaagga agccaaggcc 2521 agcgagtggc ggcgattcct gcgggagcag gtcatggagg tgcagatcat gcagatgcag 2581 ctgcctattc cgcgcgagga ggatcgagga gcagaagagg ggaacgtaaa ggacaagggt 2641 ggaaaaagca agcgactgga tgagctggtg gagcttggac tggaggagtt tccgcgcaac 2701 ctgctcatgc tgcagacctt ctccggattc aagaccatgc tgtggcacaa acagcgcgcc 2761 cgattcattc gcaccgaagc cggaatcgtt tcgctgctgc actgggtgct ggccgccaat 2821 acgcgcttcg ccaacacggg cggccacgat gagctgctgg ccagcatggc gggatgcctg 2881 cacatggcgg tgcgcaatcg tctgatcaac atgttccaga ccttcctgcc caccaaagcg 2941 ggacgctcgg agatcgagga ggagcagtat cgcattctgc gcaggaactc gatctactgg 3001 cgcctgtatc tgaaatgttt gaccgacacg aggaccagtt tcgagcgcac caaggaggcc 3061 ctgctgatgg ccatcgacga gtgcccgtgg gacaaggccc tgctgatgga cggcgccact 3121 gccctgccga aggagcagtc cttcctgcag gacctcatga ccgagaagga gatgcgagtc 3181 tacgctctgg ccgaagagct cgacatgctg cggtccggcc actagcagcc tgtttaatct 3241 tacccattga gtttctaaat atatacttgt atattttctg taa