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LOCUS XM_017138883 2152 bp mRNA linear INV 09-DEC-2024 (NELF-B), mRNA. ACCESSION XM_017138883 VERSION XM_017138883.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017138883.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2152 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2152 /gene="NELF-B" /note="negative elongation factor B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055516" CDS 102..1886 /gene="NELF-B" /codon_start=1 /product="negative elongation factor B" /protein_id="XP_016994372.1" /db_xref="GeneID:108055516" /translation="MIMGTPAKNTNGTGLEDVNIPGQAYLREALTSCTDPLKAIESFQ LENGVLLPSLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINEMGQKEPRERDKKL KELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILVRDRELYADTDTEVKRQIWR DNQSLFGDEVSPLLSQYIREKEHILFDHTNLNNLFFQPTPKVRRQGEVVQKLANMIGT SVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMALHDLEVQEIISIDPCHKFTWCLDA CIREKNVDIKRSRELQGFLDNIKRGQEQVLGDLSMTLCDPYAINFLATSAIKILHHLI NNEGMPRDNQILILLLRMLALGLSAWVMIDSQDFKEPKLDCQVVTKFLPALMSLMVDD QCRSLHAKLPPDERESALTTIEHSGPAPDAVEAYIQESSVASILAMYYTLHTARLKDR VGVLRVLAILSACKDDRAYEDPFLHSLIALLIPMSEEFATEDFCTTLFDEFIFAGLTR ENVTSRHMLKLLWYVHNKLPAGRLATLMKAMQPTTAHNEHIHKLYETLQERIGTGAAE TPVIEAPPIEFDSPLKSVPTPGPHYNVQ" misc_feature 447..1484 /gene="NELF-B" /note="Cofactor of BRCA1 (COBRA1); Region: COBRA1; pfam06209" /db_xref="CDD:461851" polyA_site 2152 /gene="NELF-B" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caggcctgcg tttacgtttt tttctctccg caccagcaaa aaaaaaacaa caaatctcgc 61 aatttcagcg cttctccgtt caatttgccg cataattgtg tatgataatg ggcacgccgg 121 cgaagaatac caatggcacg gggctggagg acgtgaatat tccggggcag gcgtacctgc 181 gcgaggcgct gacctcctgc acggatcccc tgaaggccat cgagagtttc cagctggaga 241 acggcgtgct gctgccctcg ctgcgtccca tgttgcccct gctggatctg catggcgtgc 301 gccggctgga cttccacacc tcgctgatgg aggagctgcg cgacaagctg atcgcccaca 361 tcaacgagat gggccagaag gagccgcgcg agcgggacaa gaagctcaag gagctgctgg 421 tgaagagctt tcccgtcgtc cgcgtgaagt cgctgcgtcc ggtggtcatg gccattctgc 481 ggaacaccca gcacatcgac gacaagtacc tcaagattct cgtccgcgac agggagctct 541 atgcggacac ggatacggag gtcaagcggc agatctggcg ggacaatcag tcgctgttcg 601 gggacgaggt ttcccccctg ctgtcgcagt acatccgcga gaaggagcac attctgttcg 661 atcacaccaa tctcaataat ctgttcttcc agccgacgcc gaaggtgcga cgccaaggcg 721 aagtggtcca gaagctggcc aatatgatcg ggacgagcgt gaagctgtac gacatggtgc 781 tgcagttcct gcgcaccctc ttcctgcgga cgaggaacgt tcactactgc acgctgcgcg 841 ccgagctgct gatggccctg cacgatctgg aggtgcagga gatcatctcg attgacccgt 901 gccacaagtt cacctggtgt ttggatgcct gcatcaggga gaagaatgtg gacatcaagc 961 ggtcgcggga actgcagggc ttcctggata atatcaagcg cggccaggag caggttttgg 1021 gcgatctctc gatgacgctg tgcgatccgt atgccatcaa cttcctggcc acgtcggcca 1081 tcaagatact gcatcacctg atcaacaacg agggcatgcc gcgcgacaat cagatcctca 1141 tcctgctgct caggatgttg gctttggggc tgagtgcctg ggtgatgatc gattcgcagg 1201 acttcaagga accgaagctg gactgccagg tggtgaccaa gttcctaccg gcgctcatgt 1261 cgctgatggt ggacgaccag tgccgcagtc tgcatgcgaa actgccgccg gatgagcgcg 1321 agtcggcgct gaccaccatc gagcactcgg gaccggcgcc cgatgccgtg gaggcgtaca 1381 tccaggagag ctcggtggcc agcatactgg ccatgtacta cacgctgcac acggcgcgcc 1441 tcaaggatcg cgtgggcgtg ctgcgcgtgt tggctatttt gtccgcctgc aaggacgatc 1501 gggcctacga ggatcccttc ctgcactcgc tgatcgcttt gctcatcccc atgagcgagg 1561 agttcgccac cgaggacttc tgcaccacgc tcttcgacga gttcatcttc gccggcctca 1621 cgcgcgagaa cgtgacctcg cgtcacatgc tgaagctgct gtggtatgtg cacaacaagc 1681 tgcccgccgg ccgcctggcc acgctgatga aggccatgca gccgacgacg gcccacaacg 1741 agcatatcca caagctgtac gaaacgctgc aggagaggat tggcaccggt gcggcggaga 1801 cgccggtgat cgaggcgccg cccattgagt tcgattcgcc gctgaagagc gtgcccacgc 1861 cgggcccaca ctacaatgtc caatagctag aggcgccggc ggtcgcgcca ccagcggctg 1921 tcgtcggatg atgatggtta ataaggagaa cgataaggat gtttacttct gggcagccag 1981 tgggatgcat gcatgcgcaa atcataattc tactgtttag actaagcagc gagatatagt 2041 ttacatattt acaaatgtat ggctttgttg gcaggcatta tctatatatt atatattact 2101 gttacgctag tgtaacgatc gattctagta cacaatatag agtacaaatc ta