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LOCUS XM_017138881 5188 bp mRNA linear INV 09-DEC-2024 (gce), transcript variant X2, mRNA. ACCESSION XM_017138881 VERSION XM_017138881.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017138881.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5188 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5188 /gene="gce" /note="germ cell-expressed bHLH-PAS; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins" /db_xref="GeneID:108055514" CDS 1020..3896 /gene="gce" /codon_start=1 /product="uncharacterized protein gce" /protein_id="XP_016994370.2" /db_xref="GeneID:108055514" /translation="MEGASRSRNSSTSQSQGQGQGRQGQDIEDLKQDIPFFDERTPSA LDADLLVLGKSECQMDDLGAWEPDADADVDADAEAPLESIAIQPIDLDEDNYPDENES SVLGSDYAPSGSGSGANSFYQSPTPSSCDLKLRPPSNSMYHFNYRSPGSPLPVGGSNA RALHPYAHSPVHHGTQPGFYPNMWYPNAPYGSGGSAGGGGGGGVVASGRYMGYGPGGS GMPGSGPGSLQGAFPGHSAQLHAMHHQYPQPHPYGHHPQHPHHPPHPHHQHPNETMME MFQLSNSGREARNRAEKNRRDKLNGSIQELSTMVPHVAESPRRVDKTAVLRFAAHALR LKHAFGNSLMQQRPQITDTLMDMLDSFFLTLTCHGHILLISASIEQHLGHCQSDLYGQ SIMQITHPEDQNMLKQQLIPTELENLFDAHGDSDAEGEPRQRSKSEEDAIDRKLREDR RSFRVRLARAGPRSEPTAYEVVKIDGCFRRSDEAPRGVQSNHLSSNLQLIRRTRGRDD VIPLHTISGNDIILTACARIIRPPKIANRLIDANTLEYKTRHLIDGRIIDCDQRIGIV AGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQS KGYLEIDKETNKVHSFVCVNTLLGEEEGKRRVQEMKKKFSVIINTQIPQSTVDVPASE HPALLEKAVLRLIQNLQKSGDADGGHGDEGDEDEEAEDEDDDEEDDEDQDDGARSMSE FGDPYSSHHARSHHNSSALSSHGQGSSKTPPLALVPPETSSVKSSISKSISVVNVTAA KHLRGVHGSAAKSPCPLGSCTCSESHSPCDFCQGPPTPNPQAIGSTLKRGSTVLAETE EKIAKRRFIPSTEIEHVLHTSLDQIGRNLTQQLNVARNLREQGQRYDVPHADQRFDEI MQEHHKQTELYVNIKSEYAVQLQNKSTGNRKSSESDRNQEEDQD" misc_feature 1872..2036 /gene="gce" /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain family; Region: bHLH_PAS; cd11391" /db_xref="CDD:381397" misc_feature order(1872..1874,1881..1886,1893..1898,1902..1907, 1917..1919,1980..1985) /gene="gce" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:381397" misc_feature order(1902..1904,1911..1916,1923..1928,1932..1937, 1944..1952,1980..1988,1995..2000,2007..2009,2016..2021, 2025..2027) /gene="gce" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:381397" misc_feature 2091..>2252 /gene="gce" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:238075" misc_feature 2646..2975 /gene="gce" /note="PAS domain; Region: PAS_11; pfam14598" /db_xref="CDD:464214" polyA_site 5188 /gene="gce" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agcgagcgtc ctggctgctg tccgtccgtt tctctgtccg tccgtccgtc cgtcgctccc 61 gacgtcttgg gcacactggg cgctttggac cgggcctcat cgacggcagt cggtcggcat 121 ctgtccaagt cccacgacgc gtcgtcgtcg ctccgcatcg gccgttgctg cagtggaagc 181 ggcccatttt ggccaagtgg cgcctccgta gtccctagtc ttatggccag ccgacgtttc 241 ccaggcctca ggtagaggca aaggctctcc acaccccgtt tccagttcct agcaacaaca 301 aatgaacact tgctggaagc tgaatggcaa aaaacaacaa caattaaagc tacaacaaca 361 aagtgaaaca aaaacaacaa aatacctcca gctgtacaaa tattgattga tattgaacaa 421 ctaaaaaaga gaaataaata cagaaattaa aaccaaaata atcagaaaat taaaacatag 481 cgaaaacgga aaaaatattg aaaattgtgc tcaattcccc agaatcccgt ccaactaaaa 541 aaactaccaa aagtgtgttt gaaaaatgtt tgaaaaaata cttatgaaaa taccgctcaa 601 aggcgagagt gtaacaatta aaataataga aaaataccaa gtgaactgaa gtaaaatact 661 gcaattttat ataccgttat tctttttttt accttatttt atgcttgcaa agtaaagtac 721 aaagaatcac aaagaaaaat aaaaacaaat aacggcaaag ataacaaagc gaattgcaac 781 tgcaggacac caaaaacaac aacgaagcaa aacaaagtaa tacaaaataa ataattcgcc 841 aataccaata cagccagcag acagagcgag acgggtagag aaataaacaa accgctcggc 901 gcagacgagt gcgagtgaaa gggcgagctt gccgagagga agagagagag agcgagagca 961 agagcgagcg aaaagcttca tgcagaaaaa caagaaacag cgcaaaacat ctggagaaca 1021 tggagggtgc cagtcgcagc aggaactcct ccacgagtca gagtcaaggt caaggtcaag 1081 gtcgccaggg ccaggacatt gaggatctca agcaagacat tcccttcttt gacgaacgaa 1141 ccccatcggc actcgatgcc gatctccttg tgctgggcaa aagcgaatgc caaatggacg 1201 atctgggtgc ctgggagccc gatgccgatg cggatgtgga tgcggatgcg gaggctccgc 1261 tggagagcat agccatccaa ccgatcgacc tggacgagga caactatccg gatgagaacg 1321 agagctcggt gctgggcagc gattatgcgc ccagcgggag tggcagtggt gcgaatagct 1381 tctaccaatc gcccacgccc tcctcctgcg acctgaagct ccgtccgccc tccaattcca 1441 tgtaccactt caactaccga tcgccgggca gtccgctgcc cgtcggagga tccaatgctc 1501 gcgctctgca tccgtatgca cattccccgg ttcatcacgg cacccagccg ggcttctatc 1561 cgaatatgtg gtatccgaat gcaccctacg gatcgggagg atccgcaggc ggaggaggcg 1621 gcggaggagt cgtggccagt ggaaggtaca tgggctacgg tcccgggggg tcgggaatgc 1681 cgggatcggg gccgggatcc ctgcaaggag catttcccgg acactcggcc caactgcacg 1741 cgatgcacca ccaatatccg cagccacatc cgtacggcca ccatccgcag catccgcatc 1801 atccgccaca tccgcaccac cagcacccga acgagaccat gatggagatg ttccagctct 1861 cgaatagtgg tcgcgaggct cgaaatcgag cagaaaagaa tcggcgggat aaactaaacg 1921 gatccatcca ggaactttcc acaatggtgc cccatgtggc ggagtcaccg cgtcgagtgg 1981 acaaaacagc tgtcttgcgg ttcgcagccc atgcactgcg tttgaagcac gcctttggca 2041 acagcctgat gcagcagcga ccgcagatca cggacaccct gatggacatg ctggacagct 2101 tcttcctcac gctcacctgc cacggccaca tcctgctgat ctcggccagc atcgagcagc 2161 acctgggcca ctgccagtcg gacctctacg gccagagcat catgcagatc acccatccgg 2221 aggaccagaa catgctcaag cagcagctga tccccaccga gctggagaac ctcttcgacg 2281 cccatggcga ctcggatgcg gagggtgagc cccgccagcg gagcaaatcc gaggaggacg 2341 ccatcgatcg caagttgcgc gaggacagac gcagctttcg agtgagattg gctcgtgcgg 2401 gtcccagatc ggaacccacc gcctacgagg tggtcaagat cgatggctgc tttcgacgta 2461 gtgacgaagc gccccgcggc gttcaatcca accacttgag ctccaatctg cagttaatcc 2521 ggaggactcg gggtcgggac gatgtcattc ccctgcacac gatcagcggc aatgatatca 2581 ttctgactgc ctgtgcccgg attatccgtc cgccgaagat cgccaatcgg ttgattgatg 2641 ccaacacgct ggagtacaag acccgccacc taatcgacgg ccggatcatc gactgtgacc 2701 aaaggatagg aatcgtggcc ggttacatga cggatgaggt gcgcaatctc agtccgttca 2761 cctttatgca caacgacgat gtgcgttggg tgatcgtggc cctgcggcag atgtacgact 2821 gcaatagttc gtatggcgag tccacttacc gactgttcac gcggaacgga aacatcatct 2881 acctgcaatc gaagggctac ctggagatcg acaaggagac gaacaaggtg cactcctttg 2941 tctgcgtgaa cacgctgctc ggcgaggagg agggcaagcg gcgggtgcag gagatgaaga 3001 agaagttctc ggtgatcatc aacacgcaga taccgcagtc gaccgtcgat gtgccggctt 3061 ccgagcaccc ggccctgctg gagaaggctg tgctgcggct catccagaac ctgcagaagt 3121 ccggggacgc agacgggggc cacggcgatg agggcgacga ggacgaggag gcggaggacg 3181 aggatgacga cgaggaggat gacgaggatc aggacgatgg ggcgcgcagc atgtccgagt 3241 tcggcgatcc ctacagcagc catcacgctc gctcgcatca caattcctcg gccctgtcct 3301 cccatgggca aggtagctcc aagaccccgc ccctggcact cgttccaccc gaaacatcct 3361 cggttaagtc ctcgatttcg aagagcatca gtgtggtcaa cgtgacggcg gccaagcatc 3421 tgcgcggcgt ccacggatcg gcggccaaat cgccctgccc cctgggcagt tgcacctgca 3481 gcgagtccca ttcgccctgc gacttctgtc agggtccacc cacgcccaac ccgcaggcca 3541 tcgggtccac cctaaagagg ggcagcactg ttctagccga aacggaggag aaaatcgcca 3601 agcggcgctt tatacccagc actgagatcg agcacgtgct gcacacttct ctggaccaaa 3661 tcggacgaaa tctgacccaa caactcaatg tggccaggaa tttgcgggaa cagggtcagc 3721 gatacgatgt gccccatgcc gatcagcgat tcgatgagat catgcaagag caccacaaac 3781 aaaccgaact gtatgtgaac atcaagagcg agtatgcggt gcagttgcag aacaaatcaa 3841 ccggcaaccg gaagtcatcg gagtcggatc gaaatcagga ggaggaccag gactagagag 3901 atcgagagat agagagagcg ggatcggctc tcgactgaag ggtttcatcg atgtgataac 3961 tactgtcctg gcagccagct caagtcccaa aaagcatagt gtcccaaaaa agaaagcata 4021 ttaagttaga agaaggccaa ttggctaact aatggttaat gattaaccgg cggttaacgg 4081 ggaaactgct gctgaacagc tacagataca gatacggata gataacctct aaccccaacc 4141 tatgagtgag cctgagacaa acaaacaaaa cacacgcacg cacacacaca ctcacacaca 4201 cactctgatt gttcagtttg ttgtttttaa ctccatgtac caagtaaaga ggacttttac 4261 atgcatgtag agctagttac cagtgtaaag tgtagttctt tccgtttccg gtttcttttt 4321 taatgttaac aaaaatgatt tatttattat gttttgaaaa aagtttttaa atagattttt 4381 ttaattttac tatcactctt tgttaaaaga aaaattttaa attcccaaaa agtataacaa 4441 atattaatat aaaaatcgtt ataatagcga tagcgaaaac ggaaacggaa acaaacgaag 4501 aataatgatt agcataaatg ggaggattta aacaattatt aggctaaatc gtaatataca 4561 ttaaatatac tatatatata tacctatgta ccatacgttg tgcgtaatgc gcatagccca 4621 aactaaacgt gataaaagac tgttaccaac tacatacaaa cacatactac acacatggaa 4681 acacccgtaa atctataact aaagcgtaaa cgtaattcgg tatagttgcg tatatgtaat 4741 ataaatatat atacctatat atatatatta aaatgaaata ttcatgatag ttaaataaaa 4801 tttactgtac gaacactttt tatagatgtt taatgttgtt atgctataag ataaatcccg 4861 atgagtcgat ggattttggc caagcacggt gcacaaaaca attgcaagtg agccaagtac 4921 aatttacaca aatatataca tacttagatg catatatggt tcgatgtaaa ctaataaatc 4981 gatgtaaaac aaaagaaaag aagataaaat aaaattaaat taaattaaag aaaagaaaac 5041 acaaataaaa accagaaaaa gcttaggaaa aaataagaaa actctgttaa atgtttgtta 5101 tgcatttgtt ttttttttat ctaaattaat attaaactaa tgtattagtg aataaacttg 5161 tgtacctaca tacaaaacaa tgataaaa