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LOCUS XM_017138880 5414 bp mRNA linear INV 09-DEC-2024 (gce), transcript variant X1, mRNA. ACCESSION XM_017138880 VERSION XM_017138880.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017138880.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5414 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5414 /gene="gce" /note="germ cell-expressed bHLH-PAS; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins" /db_xref="GeneID:108055514" CDS 1246..4122 /gene="gce" /codon_start=1 /product="uncharacterized protein gce" /protein_id="XP_016994369.2" /db_xref="GeneID:108055514" /translation="MEGASRSRNSSTSQSQGQGQGRQGQDIEDLKQDIPFFDERTPSA LDADLLVLGKSECQMDDLGAWEPDADADVDADAEAPLESIAIQPIDLDEDNYPDENES SVLGSDYAPSGSGSGANSFYQSPTPSSCDLKLRPPSNSMYHFNYRSPGSPLPVGGSNA RALHPYAHSPVHHGTQPGFYPNMWYPNAPYGSGGSAGGGGGGGVVASGRYMGYGPGGS GMPGSGPGSLQGAFPGHSAQLHAMHHQYPQPHPYGHHPQHPHHPPHPHHQHPNETMME MFQLSNSGREARNRAEKNRRDKLNGSIQELSTMVPHVAESPRRVDKTAVLRFAAHALR LKHAFGNSLMQQRPQITDTLMDMLDSFFLTLTCHGHILLISASIEQHLGHCQSDLYGQ SIMQITHPEDQNMLKQQLIPTELENLFDAHGDSDAEGEPRQRSKSEEDAIDRKLREDR RSFRVRLARAGPRSEPTAYEVVKIDGCFRRSDEAPRGVQSNHLSSNLQLIRRTRGRDD VIPLHTISGNDIILTACARIIRPPKIANRLIDANTLEYKTRHLIDGRIIDCDQRIGIV AGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQS KGYLEIDKETNKVHSFVCVNTLLGEEEGKRRVQEMKKKFSVIINTQIPQSTVDVPASE HPALLEKAVLRLIQNLQKSGDADGGHGDEGDEDEEAEDEDDDEEDDEDQDDGARSMSE FGDPYSSHHARSHHNSSALSSHGQGSSKTPPLALVPPETSSVKSSISKSISVVNVTAA KHLRGVHGSAAKSPCPLGSCTCSESHSPCDFCQGPPTPNPQAIGSTLKRGSTVLAETE EKIAKRRFIPSTEIEHVLHTSLDQIGRNLTQQLNVARNLREQGQRYDVPHADQRFDEI MQEHHKQTELYVNIKSEYAVQLQNKSTGNRKSSESDRNQEEDQD" misc_feature 2098..2262 /gene="gce" /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain family; Region: bHLH_PAS; cd11391" /db_xref="CDD:381397" misc_feature order(2098..2100,2107..2112,2119..2124,2128..2133, 2143..2145,2206..2211) /gene="gce" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:381397" misc_feature order(2128..2130,2137..2142,2149..2154,2158..2163, 2170..2178,2206..2214,2221..2226,2233..2235,2242..2247, 2251..2253) /gene="gce" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:381397" misc_feature 2317..>2478 /gene="gce" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:238075" misc_feature 2872..3201 /gene="gce" /note="PAS domain; Region: PAS_11; pfam14598" /db_xref="CDD:464214" polyA_site 5414 /gene="gce" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgatttcaa tatatgtaat taatttttgt ttctgtagcg gttcggacgg acgcttcgcg 61 acgttcgctt ggtcgccgct tcggtgtttc gctgttcgct gctcgctgtt tcgcctaccg 121 tcgccgtttc tgtttcttat ttattattat tttttatttt tattcgcatt cgtatttgtg 181 tttttttggc tgtgtacgtg tgagcgtttc cttctctttg gcctgccttt ttcgtgggct 241 ccgccgctgc taaaatgcaa agaacacgct cgagaaacgt aaatggcgcc gcgctaacga 301 atggaattgg aatatcaaac agtgcccccc aaagccccat ataaaaaaat acaaaaaaaa 361 aaacaacaac aacaacaaag agaagaaata caacaagcaa caaacaaact tcgctttttt 421 ttcgggtgtg tgctgtgccc agtgtttgtg cttttgtgta aaaaaagttt gaaacaacaa 481 aataaaaacg cggtcgagaa gaattattag aaaagaagca acaacaaatg aacacttgct 541 ggaagctgaa tggcaaaaaa caacaacaat taaagctaca acaacaaagt gaaacaaaaa 601 caacaaaata cctccagctg tacaaatatt gattgatatt gaacaactaa aaaagagaaa 661 taaatacaga aattaaaacc aaaataatca gaaaattaaa acatagcgaa aacggaaaaa 721 atattgaaaa ttgtgctcaa ttccccagaa tcccgtccaa ctaaaaaaac taccaaaagt 781 gtgtttgaaa aatgtttgaa aaaatactta tgaaaatacc gctcaaaggc gagagtgtaa 841 caattaaaat aatagaaaaa taccaagtga actgaagtaa aatactgcaa ttttatatac 901 cgttattctt ttttttacct tattttatgc ttgcaaagta aagtacaaag aatcacaaag 961 aaaaataaaa acaaataacg gcaaagataa caaagcgaat tgcaactgca ggacaccaaa 1021 aacaacaacg aagcaaaaca aagtaataca aaataaataa ttcgccaata ccaatacagc 1081 cagcagacag agcgagacgg gtagagaaat aaacaaaccg ctcggcgcag acgagtgcga 1141 gtgaaagggc gagcttgccg agaggaagag agagagagcg agagcaagag cgagcgaaaa 1201 gcttcatgca gaaaaacaag aaacagcgca aaacatctgg agaacatgga gggtgccagt 1261 cgcagcagga actcctccac gagtcagagt caaggtcaag gtcaaggtcg ccagggccag 1321 gacattgagg atctcaagca agacattccc ttctttgacg aacgaacccc atcggcactc 1381 gatgccgatc tccttgtgct gggcaaaagc gaatgccaaa tggacgatct gggtgcctgg 1441 gagcccgatg ccgatgcgga tgtggatgcg gatgcggagg ctccgctgga gagcatagcc 1501 atccaaccga tcgacctgga cgaggacaac tatccggatg agaacgagag ctcggtgctg 1561 ggcagcgatt atgcgcccag cgggagtggc agtggtgcga atagcttcta ccaatcgccc 1621 acgccctcct cctgcgacct gaagctccgt ccgccctcca attccatgta ccacttcaac 1681 taccgatcgc cgggcagtcc gctgcccgtc ggaggatcca atgctcgcgc tctgcatccg 1741 tatgcacatt ccccggttca tcacggcacc cagccgggct tctatccgaa tatgtggtat 1801 ccgaatgcac cctacggatc gggaggatcc gcaggcggag gaggcggcgg aggagtcgtg 1861 gccagtggaa ggtacatggg ctacggtccc ggggggtcgg gaatgccggg atcggggccg 1921 ggatccctgc aaggagcatt tcccggacac tcggcccaac tgcacgcgat gcaccaccaa 1981 tatccgcagc cacatccgta cggccaccat ccgcagcatc cgcatcatcc gccacatccg 2041 caccaccagc acccgaacga gaccatgatg gagatgttcc agctctcgaa tagtggtcgc 2101 gaggctcgaa atcgagcaga aaagaatcgg cgggataaac taaacggatc catccaggaa 2161 ctttccacaa tggtgcccca tgtggcggag tcaccgcgtc gagtggacaa aacagctgtc 2221 ttgcggttcg cagcccatgc actgcgtttg aagcacgcct ttggcaacag cctgatgcag 2281 cagcgaccgc agatcacgga caccctgatg gacatgctgg acagcttctt cctcacgctc 2341 acctgccacg gccacatcct gctgatctcg gccagcatcg agcagcacct gggccactgc 2401 cagtcggacc tctacggcca gagcatcatg cagatcaccc atccggagga ccagaacatg 2461 ctcaagcagc agctgatccc caccgagctg gagaacctct tcgacgccca tggcgactcg 2521 gatgcggagg gtgagccccg ccagcggagc aaatccgagg aggacgccat cgatcgcaag 2581 ttgcgcgagg acagacgcag ctttcgagtg agattggctc gtgcgggtcc cagatcggaa 2641 cccaccgcct acgaggtggt caagatcgat ggctgctttc gacgtagtga cgaagcgccc 2701 cgcggcgttc aatccaacca cttgagctcc aatctgcagt taatccggag gactcggggt 2761 cgggacgatg tcattcccct gcacacgatc agcggcaatg atatcattct gactgcctgt 2821 gcccggatta tccgtccgcc gaagatcgcc aatcggttga ttgatgccaa cacgctggag 2881 tacaagaccc gccacctaat cgacggccgg atcatcgact gtgaccaaag gataggaatc 2941 gtggccggtt acatgacgga tgaggtgcgc aatctcagtc cgttcacctt tatgcacaac 3001 gacgatgtgc gttgggtgat cgtggccctg cggcagatgt acgactgcaa tagttcgtat 3061 ggcgagtcca cttaccgact gttcacgcgg aacggaaaca tcatctacct gcaatcgaag 3121 ggctacctgg agatcgacaa ggagacgaac aaggtgcact cctttgtctg cgtgaacacg 3181 ctgctcggcg aggaggaggg caagcggcgg gtgcaggaga tgaagaagaa gttctcggtg 3241 atcatcaaca cgcagatacc gcagtcgacc gtcgatgtgc cggcttccga gcacccggcc 3301 ctgctggaga aggctgtgct gcggctcatc cagaacctgc agaagtccgg ggacgcagac 3361 gggggccacg gcgatgaggg cgacgaggac gaggaggcgg aggacgagga tgacgacgag 3421 gaggatgacg aggatcagga cgatggggcg cgcagcatgt ccgagttcgg cgatccctac 3481 agcagccatc acgctcgctc gcatcacaat tcctcggccc tgtcctccca tgggcaaggt 3541 agctccaaga ccccgcccct ggcactcgtt ccacccgaaa catcctcggt taagtcctcg 3601 atttcgaaga gcatcagtgt ggtcaacgtg acggcggcca agcatctgcg cggcgtccac 3661 ggatcggcgg ccaaatcgcc ctgccccctg ggcagttgca cctgcagcga gtcccattcg 3721 ccctgcgact tctgtcaggg tccacccacg cccaacccgc aggccatcgg gtccacccta 3781 aagaggggca gcactgttct agccgaaacg gaggagaaaa tcgccaagcg gcgctttata 3841 cccagcactg agatcgagca cgtgctgcac acttctctgg accaaatcgg acgaaatctg 3901 acccaacaac tcaatgtggc caggaatttg cgggaacagg gtcagcgata cgatgtgccc 3961 catgccgatc agcgattcga tgagatcatg caagagcacc acaaacaaac cgaactgtat 4021 gtgaacatca agagcgagta tgcggtgcag ttgcagaaca aatcaaccgg caaccggaag 4081 tcatcggagt cggatcgaaa tcaggaggag gaccaggact agagagatcg agagatagag 4141 agagcgggat cggctctcga ctgaagggtt tcatcgatgt gataactact gtcctggcag 4201 ccagctcaag tcccaaaaag catagtgtcc caaaaaagaa agcatattaa gttagaagaa 4261 ggccaattgg ctaactaatg gttaatgatt aaccggcggt taacggggaa actgctgctg 4321 aacagctaca gatacagata cggatagata acctctaacc ccaacctatg agtgagcctg 4381 agacaaacaa acaaaacaca cgcacgcaca cacacactca cacacacact ctgattgttc 4441 agtttgttgt ttttaactcc atgtaccaag taaagaggac ttttacatgc atgtagagct 4501 agttaccagt gtaaagtgta gttctttccg tttccggttt cttttttaat gttaacaaaa 4561 atgatttatt tattatgttt tgaaaaaagt ttttaaatag atttttttaa ttttactatc 4621 actctttgtt aaaagaaaaa ttttaaattc ccaaaaagta taacaaatat taatataaaa 4681 atcgttataa tagcgatagc gaaaacggaa acggaaacaa acgaagaata atgattagca 4741 taaatgggag gatttaaaca attattaggc taaatcgtaa tatacattaa atatactata 4801 tatatatacc tatgtaccat acgttgtgcg taatgcgcat agcccaaact aaacgtgata 4861 aaagactgtt accaactaca tacaaacaca tactacacac atggaaacac ccgtaaatct 4921 ataactaaag cgtaaacgta attcggtata gttgcgtata tgtaatataa atatatatac 4981 ctatatatat atattaaaat gaaatattca tgatagttaa ataaaattta ctgtacgaac 5041 actttttata gatgtttaat gttgttatgc tataagataa atcccgatga gtcgatggat 5101 tttggccaag cacggtgcac aaaacaattg caagtgagcc aagtacaatt tacacaaata 5161 tatacatact tagatgcata tatggttcga tgtaaactaa taaatcgatg taaaacaaaa 5221 gaaaagaaga taaaataaaa ttaaattaaa ttaaagaaaa gaaaacacaa ataaaaacca 5281 gaaaaagctt aggaaaaaat aagaaaactc tgttaaatgt ttgttatgca tttgtttttt 5341 ttttatctaa attaatatta aactaatgta ttagtgaata aacttgtgta cctacataca 5401 aaacaatgat aaaa