PREDICTED: Drosophila takahashii Ssu72 CTD phosphatase (Ssu72),

LOCUS       XM_017138499            1653 bp    mRNA    linear   INV 09-DEC-2024
            mRNA.
ACCESSION   XM_017138499
VERSION     XM_017138499.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017138499.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1653
                     /gene="Ssu72"
                     /note="Ssu72 CTD phosphatase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:108055224"
     CDS             1..588
                     /gene="Ssu72"
                     /codon_start=1
                     /product="RNA polymerase II subunit A C-terminal domain
                     phosphatase SSU72"
                     /protein_id="XP_016993988.1"
                     /db_xref="GeneID:108055224"
                     /translation="MTDPSKLSVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVK
                     LPGMAFDKPNVYEFGTSYEDIYRDLEAKDKEFYTQNGLLHMLDRNRRIKKCPERFQET
                     KEQFDIIVTVEERVYDLVVLHMESMDSVDNRPVHVLNVDVVDNAEDALMGAFLITDMI
                     NLMAKSTDLDNDIDEMIQEFEERRNRVILHSVLFY"
     misc_feature    19..585
                     /gene="Ssu72"
                     /note="Ssu72-like protein; Region: Ssu72; pfam04722"
                     /db_xref="CDD:461410"
     polyA_site      1653
                     /gene="Ssu72"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgactgatc ccagcaagct ttcggtggcc gtcgtctgct cctcgaacat gaaccgctcg
       61 atggaggcgc acaacttcct ggccaagaag ggcttcaatg tgcgctccta cggcaccggc
      121 gagcgcgtca agctgcccgg catggcgttc gacaagccga atgtgtatga attcgggacc
      181 agctacgagg acatctaccg cgacctggag gccaaggaca aggaattcta cacacagaac
      241 ggcctgctgc acatgctcga ccgcaatcgg cgcatcaaga agtgcccgga gcgcttccag
      301 gagaccaagg agcagttcga catcattgtc accgtggagg agcgcgtcta cgacctggtc
      361 gtgctgcaca tggagtccat ggactcggtg gacaatcggc cagtgcacgt actcaacgtg
      421 gatgtggtgg acaatgcgga ggatgcacta atgggcgcct ttctcatcac cgatatgatc
      481 aacttgatgg ccaagtccac ggacctagac aacgacatcg acgagatgat ccaggagttc
      541 gaggagcgcc gcaaccgggt catcctgcac tcggtgctct tctactgacg accgacgtcc
      601 gccaaccgtt cgtgtccagc agctccagca gcttcggcag ctccagcatc cgcggccaaa
      661 tcccgcagac tccccgccga ctgcagttcg cctgggatca tcgcagtgga atacggatca
      721 cggactggga gcctagcata taagaaactt gtaaatagag aggggccatc gcagcggcaa
      781 aagaaacacc caagcacaca catccgattc agaaatccac acaaccaatg gcggctccgg
      841 aaatccttcc tcttcgtttg tagtctgtgt acgcgtcctc cgtattcctt gtagttctgg
      901 gtttttatca ctggcctctc gtcttccccg attccgagtc caattcatgc gtatatgtaa
      961 acagaaaatg aaaatgcctg tgtgaatgag aagagagcca accaggggcg gttcggactg
     1021 aggatcgggt atcgtggatc gtggatcgtt gaccgctggg gttaggtagt ttttaatcct
     1081 acacgtgtat ttttatgaat tgttcagaca gagggctacc ggcctgccat tcgcatcgcc
     1141 catttgggcc actaaagacc aactaaaggc ctgtgctgtg cgtttcaaac aatagccaaa
     1201 ggcccgcagc gggcgctaac acgcaaaact aaataaaaac caaggcagtt gactacttag
     1261 attgtgttca ctaatcgcga ttggaatgaa aattggttta ccccttacta agggcccatt
     1321 tctcaatgtt ttgccgagat atgaaagctt tgtgatgaga aatcggccat taagtgtaac
     1381 caaaggttaa atttgtatat ctgaaaaaaa ctaagtactt ttccttgcat tttcctggtt
     1441 taaataatta tttcaaaatt ttagaaaaat tagcagtttt taaacatttt ttatagattt
     1501 ttactttatg tttttcgctc ctaattttaa tatttttctt ttatattaaa atatatatta
     1561 tttttgtcta agtactataa cattatctct tctttccctt gtataaaata agctagaatt
     1621 tataaaaata aaaaaaatca gccttagccc caa