Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017138494 7085 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017138494 VERSION XM_017138494.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017138494.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7085 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7085 /gene="peb" /note="pebbled; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055221" CDS 532..5997 /gene="peb" /codon_start=1 /product="ras-responsive element-binding protein 1" /protein_id="XP_016993983.2" /db_xref="GeneID:108055221" /translation="MLAAQQQQQQQHNNSTAETEMERQRRDSTTSESSLEHLDLGRTP KKLGGSGGSAQTTSTPHELTAATSRKRKLRQLQQQQLNHQQQDLLSDEEEEEERDEDE EPRNLGRHKQRRSTQASIVVDYSGGDASSLRKKFRLNRSAAASLSESGFVDASSTAHS GYLGNSNSSTANNNNSTTAVSSGAGAGVAPPGGASSSSGSSSSGGSGGSSPQGGLCLS SGESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSS ASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQAAQSQQQQQSQSQQQ QSQQSQQQRRQQQQQNPAQQQQQQLVATAGRAESYESDASCSTDVSSGHSRSSSSFNN NNNSHKANNNLKELEDEVVVVDPQESKQRRQKTTINNNNIIDREEDRDNLDDEEDREE EADVAMLTSTPDVATLLAGASASGAASRSPSPSPPASPASLLLSCPACGASDFETLPA LCAHLDARHSDIPAKCRDCEVIFASHRQLQAHCCRGSSVLPPLLGASSSPLHGDEDLE EEDADRKERMPSDDFFQQLYLKQKASASSGAISHPPSPIKHEPADSKDLADIQSILNM TSSSSSFLRNFEQSVNTPSSSQYSLDGRDQEEEAQDAFTSEFRRMKLRGEFPCKLCSC VFPNLRALKGHNRVHLGAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVC NYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDAGCEDSKSRLGEDLADLSFRS ISPTPPPSGVVAPLNESSTSSSQLKHMLLGENLHPVAQPPLKIQVKSLDQLVDKKPSV AAPPKQQEVEKDFSMDVLDLSKKPTASVTPTPTALPTVVPGAPSDLAALALEQQQLLL AQQQLFGAGGDAASQYMQQLFRSLMFQSQTSGFPFFPFMAPPPPQQQQSPLVSSEKAP LVSPPSRLSSLNPLPVGVGVPVPVPPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEH CSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASSAAAAAAAAAAAAAASST TSANHHHGSHGHAPISEQVKYAILAQQLKAHKNTDLLQQALAHGSSSVAGNPLLHFGY PLTTPSPLGVNGGHPIAMDDDEPKLIIDEDEDHEVEAEAEEEFEEDEEEELEELDEPE VEMEMEQPEQQPVEEDAEEEELPKPLEQNEAAQKMAETILEQAIKAGKPTASPQENPQ EEKALVTMQEPPSSASSLKNMIAQAESVGKSLKEVASSPFKDESQDLVPVAKLVDNAT SQTMSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSGSEPKKKSA YSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRK HGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQEKERELERERERERELERE RELEKERELEKEKERERQQLIQKLAAQMNAAAAAAAAAGGSGGAAAADALAGGDLPYK CHLCEGSFAERLQCLEHIKLAHAHEFALLLAKGAIENESLEAANPHQQQQQQSSSVHS DDEATNGNGSRGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRK FTLKHSMLRHMKKHSGRAHNGDNPGSDCSDDEQVMSSPPGTPAPVAPPAATPNPPVNN NNSCHVNNNNGGGAAAKGLGLKLPKLHELLDKASEWRASRLGEHKENLGEATPSPAAV AGSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDNK" misc_feature 1234..1296 /gene="peb" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1249..1251,1255..1257,1261..1263,1267..1272, 1279..1284,1291..1293,1345..1347,1351..1353,1363..1368, 1375..1380,1387..1389,1429..1431,1435..1437,1441..1443, 1447..1452,1459..1464,1471..1473) /gene="peb" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1330..1392 /gene="peb" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1366..1443 /gene="peb" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 1414..1476 /gene="peb" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2560..2622 /gene="peb" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2575..2577,2581..2583,2587..2589,2593..2598, 2605..2610,2617..2619,2671..2673,2677..2679,2689..2694, 2701..2706,2713..2715,2755..2757,2761..2763,2767..2769, 2773..2778,2785..2790) /gene="peb" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2656..2718 /gene="peb" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2692..2769 /gene="peb" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 2740..2796 /gene="peb" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 4693..4755 /gene="peb" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275370" misc_feature order(4708..4710,4714..4716,4720..4722,4726..4731, 4738..4743,4750..4752,4792..4794,4798..4806,4810..4815, 4825..4827,4837..4839) /gene="peb" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275370" misc_feature 4729..4806 /gene="peb" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 4777..4842 /gene="peb" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275370" misc_feature 5431..5493 /gene="peb" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 5467..5541 /gene="peb" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 5515..5577 /gene="peb" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 7085 /gene="peb" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctgccgaat cggttgcgct gcggctgcgc tcaaaactct gaaaacactg aactcgtgcg 61 cggcgcttca aaaactaaag acaaccaact cagaaagcag acgaatcaaa tagttatttg 121 aaaaaaaaaa ccaaacggaa tttctcaatt ctaatcctac aagcaaaaac atttttttta 181 agtttctcaa acacaaacca ttgggaattt tggaataccc caagcttgaa agccaaagaa 241 gtgtgaagaa tatatagtga acccaaactt aacacaaagt gctatcagaa ttaaaccatc 301 tgataaaaat tactactcaa caccaaaaag ataccaaaaa ccatgggtag ttgttcgacc 361 cagctaatcg caggaagaac ttgacccaaa taaattggta caaaaatgta ttgcaatatt 421 gtgcacataa tattacaaga aaattgaaaa actaagagtt tattgcaaac acggttattc 481 tgttacgaga ttacaacaag tctgcaactt tctacaaaca cttggggaaa aatgctcgcc 541 gcacagcaac agcagcagca gcagcacaac aacagcacag cggaaacgga aatggagcgc 601 cagcgccggg actccaccac ctcggagtca tccctggagc acctggacct gggtcgcacg 661 cccaagaagc tgggtggcag cggtggctcc gcccagacca cctccacgcc ccacgaattg 721 acggcggcga cgtcgcgcaa gcgcaaactc cgccaattgc agcagcagca actcaatcac 781 cagcagcagg atttgctgag cgacgaggag gaggaggagg agcgcgacga ggacgaggag 841 ccccggaatc tggggcggca caagcagcgc cgcagcaccc aggcctccat tgtggtggac 901 tacagcggcg gcgatgccag ttcgctgcgc aagaagttcc gcctgaatcg ctcggcggcg 961 gccagtctct cggaatcggg attcgtggat gccagcagca cggcccacag tggctatctg 1021 ggcaacagca acagcagcac cgccaataac aacaacagta ccaccgcagt ttctagtggt 1081 gcaggtgctg gggtggctcc acctggcgga gcctccagca gcagcggcag cagcagcagc 1141 ggcggatccg gcggctcctc gccgcagggc ggcctgtgcc tctccagcgg cgagtcgggc 1201 atcggagccg gggacgagca catgaagtac ctgtgcccca tctgcgaggt ggtctcggcc 1261 acgccgcacg agttcaccaa ccacatccgg tgccacaact acgccaacgg cgacacggag 1321 aacttcacct gccgcatttg ctccaaggtg ctatcctcgg cctcatccct ggacagacac 1381 gtgctggtgc acacgggcga gcggcccttc aactgccgct actgccacct gaccttcacc 1441 accaacggca acatgcaccg ccacatgcgc acccacaagc agcatcaggc agcgcagtcg 1501 caacagcagc agcagtctca gtcgcaacag caacagtcgc aacagtcgca acagcaacgc 1561 agacagcaac agcagcagaa tcccgcccag cagcagcagc agcaactggt ggccaccgcg 1621 ggacgagcgg agagctacga gagcgacgcc agctgctcca cggacgtctc cagtggccac 1681 agtcgcagca gcagctcctt caacaacaac aacaactcgc acaaggccaa caacaacctg 1741 aaggagctgg aggacgaggt ggtggtggtg gatccgcagg agagcaagca gcgccgccag 1801 aagacgacca tcaataacaa caacattatc gatcgggagg aggatcggga taatttagat 1861 gacgaggagg atcgggagga ggaggccgat gtggccatgc tgaccagcac accggatgtg 1921 gccaccttgc tggccggagc cagtgcctcc ggcgcggcct cccgttcgcc ctccccctcg 1981 ccgccggcct cgcccgcctc cctgctgctc agctgccccg cctgcggagc ctccgacttc 2041 gagacgctgc ccgccctgtg cgcccatttg gatgctaggc actcggatat cccggccaag 2101 tgccgcgact gcgaggtgat cttcgccagc caccgccagc tgcaggcgca ctgctgtcgc 2161 ggatcctctg tcctgccgcc gctcctggga gccagtagtt cgcccctcca tggggatgag 2221 gatctggagg aggaggatgc ggaccgcaag gagcgcatgc ccagcgacga cttcttccag 2281 cagctgtacc ttaagcagaa ggcctccgcc tcctctggcg ccatctcgca tcctccctcg 2341 cccatcaaac acgagccggc ggacagcaag gatctggccg acatccagag catcctgaac 2401 atgaccagct ccagctcgag cttcctgcgc aacttcgagc agtcggtgaa cacgcccagc 2461 tcgagtcagt acagtttgga tggccgggat caggaggagg aggcccagga tgccttcacc 2521 tcggagttcc gccgcatgaa gctgcgcggc gagttcccct gcaagctctg cagctgcgtc 2581 tttcccaatc tgcgtgcgct gaagggtcac aaccgggtgc atctgggtgc agtgggtccg 2641 gcgggaccct ttcgctgcaa catgtgtccc tatgccgtgt gtgataaggc cgctctggtg 2701 cggcacatgc gcacccacaa cggagatcgt ccctacgagt gcgccgtctg caactacgcc 2761 ttcaccacca aggcgaactg cgagcggcat ctgaggaacc ggcatgggaa gacctcgcgg 2821 gaggaggtga agcgggccat tgtctaccat ccggcggagg atgccggctg cgaggacagc 2881 aagtcgcgtc tgggcgagga tctggccgat ctgagcttcc gttcgattag ccccacgcct 2941 cctccatcgg gagtagtggc gcctctgaat gagagcagca ctagcagttc ccagctgaag 3001 cacatgctcc tgggtgagaa ccttcatccg gtggcccagc cgccgcttaa gattcaggtg 3061 aaatccctcg accagctggt ggacaagaag ccctcggtgg cagctcctcc caagcagcag 3121 gaagtggaga aggacttcag catggatgtg ctggatctca gcaagaagcc tacagcctct 3181 gttacgccca cacccactgc cctgcccact gtggtgccag gtgctccctc ggatttggct 3241 gccctcgctt tggagcagca gcagttgctc ctcgcccagc agcagctgtt cggcgctggc 3301 ggggatgccg cctcccagta catgcagcag ctcttccgca gcctcatgtt ccagtcgcag 3361 acctccggct ttcccttctt ccccttcatg gcgcccccgc cgccccagca gcagcaatcc 3421 ccgctggtga gttccgagaa ggcgcccctg gtgagtccac ctagtcgcct cagttccctg 3481 aatcccctgc cagtgggagt gggtgtgccc gtgcccgttc cacccggtgg ccccgtgaaa 3541 atggtcatta agaacggagt gctgatgccc aagcagaagc agcgacgcta ccgcaccgag 3601 cgacccttcg cctgcgagca ctgctcggcg agattcaccc tgcgctcgaa catggagcgc 3661 cacgtgaagc agcagcatcc gcagttctac gcgcagcggc agaggagcgg tcaccatgtg 3721 atgaggggca ggggagcctc cagtgcggca gcagcagcag cagccgccgc agccgccgca 3781 gcagcctcct ccaccacctc cgcgaatcac caccatggca gccatggcca tgcccccatc 3841 tcggagcagg tcaagtacgc cattctcgcc cagcagctga aggcgcacaa gaacaccgat 3901 ctgctgcagc aggccttggc ccatggctcc agcagcgtgg ccgggaatcc gctcctgcac 3961 ttcggctatc ccttaaccac gcccagtccc ttgggagtca acgggggtca tcccattgcc 4021 atggatgatg atgagcccaa gctgatcata gacgaagatg aggatcatga ggtggaggcc 4081 gaggcggagg aggagttcga ggaggacgag gaggaggagc tagaggagct ggatgagccg 4141 gaggtggaga tggagatgga gcagcccgag cagcagccag ttgaagagga tgccgaggag 4201 gaggagctgc ccaagccact ggagcaaaac gaggcggccc agaagatggc cgagaccata 4261 ctggagcagg ccatcaaggc gggcaagcca accgccagtc cacaggagaa tcctcaagag 4321 gagaaagcac tagtgaccat gcaggaacca cccagctcgg caagcagcct caaaaacatg 4381 attgcccagg ccgagtccgt gggcaaatcc ctcaaagagg tggccagttc gccgttcaaa 4441 gacgaatccc aggacctggt gccggtggcc aagctggtgg acaacgccac cagccagacg 4501 atgagcttca acagctactt ccggcccagc gacgtggcca accacatgga gcagagcgac 4561 gaggagggcc tggtggcctc tggcagtgcc agcgagagca acaacagcgg caccgaggac 4621 gtcacctcca gcagttcggg cagcgagccc aagaagaagt ccgcctacag tttggcgccc 4681 aatcgggtct cctgtcctta ttgccagcgg atgttcccct ggagcagctc gctgcgccgg 4741 cacatcctca cccacaccgg gcagaagccc ttcaagtgct cccactgccc gctgctcttc 4801 accaccaaga gcaactgcga ccgccatctg ctgcgcaagc acggcaacgt ggagtcggcc 4861 atgtcggtct atgtgcccac cgaggacgtg agcgagccca ttccggtgcc caagtcggtg 4921 gaggagatcg agctggagga gcagcggcgt cgccaggaga aggagaggga gttggagcgg 4981 gaaagggagc gggaaaggga gctggaaagg gagagggagc tggagaagga gcgtgagctg 5041 gagaaggaga aggagcggga gcgccagcag ctcatccaga agctggcggc ccagatgaat 5101 gccgctgccg ctgccgccgc tgcagcagga ggatctggcg gagcagctgc agcggatgcc 5161 ctggctggcg gagatctgcc ctacaagtgc catctctgcg agggatcctt cgcagagcga 5221 ctgcagtgct tggagcacat caagctggcc catgcccacg agtttgccct gctcctggcc 5281 aagggagcca tcgagaacga gtcgctggag gcggccaatc cccaccagca gcagcagcag 5341 cagtcgtcgt ctgtccactc cgatgacgag gcaaccaatg gcaacggaag tcgcggcaag 5401 tatcccgact acagcaaccg caaggtgatc tgcgccttct gcgtccgccg cttctggtcc 5461 accgaggatc tgcggcgcca catgcgcacc cactcggggg agcgaccctt ccagtgtgac 5521 atctgcctga gaaagttcac tttaaagcac agcatgctgc ggcacatgaa gaagcacagt 5581 ggaagggccc acaacgggga caatccggga tccgattgct ccgatgatga gcaggtgatg 5641 agcagcccac cgggcactcc agctccagtt gctcctcctg cagccactcc caatcctcca 5701 gtgaacaaca acaatagctg ccatgtgaac aacaacaatg ggggcggcgc cgccgccaag 5761 ggattgggcc tgaagctgcc caagctgcat gagctcctgg acaaggccag cgaatggagg 5821 gccagtcggc tgggcgagca caaggagaac ctgggcgagg ctactccctc gccggcggca 5881 gtcgctggtt cggatctaat tggcaacctg ctgggcatca gcgaccaggg catcctcaac 5941 aagctgctct cctccgccga cgaggcggcc aagctcctcg gcgtggacaa caagtgaggc 6001 agtgaaccca tagccataca aactgattct ggagcagcag cagtcttaca ccgccttacg 6061 tataccaaag cttaaatagt tttcattaat ggtagtctat agagaaaagt acttaaaagt 6121 aaaaagtaaa atagggtgct cgattatatc gtcacaactg aagaaccctg ttttataaac 6181 cccatatcat tttttttttt tgagacctct tctttttttt tgcccaccct tattttaagc 6241 ggtccaacca acaaaaacca caagctaatc aaaatctttg gagacaaaca ctattttttt 6301 taacactttt ttttcctagc tatagtactt atttaagaat taaacttaag tagctgcaat 6361 gacaacaaaa agacaaagaa ataccgaaaa acaacgaaca ttttagcatg acaaaagaaa 6421 gacttgacac gaaatacaaa aatacacaac taaaataaaa ataataatat aatgtacatt 6481 gaaagaggcc ttgagaaccg cagcgtggct taaacctagt tatataagga agagggcagg 6541 cgaaatagtg ctgcttgcaa ctaagtatag tcaagtagtc gtaagcctag atctagatac 6601 atttttttta ggatcttatt taacgaaact cattcattgc tgtagcctag aaaacaacac 6661 ataaaacata ttaaatatat agctatttaa atatacgaaa cgcatgattc ttatataact 6721 aaattagtgg acttcttaca gcaataacca aagcatttcg cgtttgtagc gttgtttaag 6781 ctaaacgaaa ataaacgaaa ttacatttac ccaatacatg cctatacata tatatattta 6841 taaaaagcac accccactac tattatatag aatacatata tggttctagc cgcagccgcg 6901 aatcggttat atttaatgtg gatgcagcag caacaaacta ctgaacaaat taaactatgt 6961 acttagcgat tatgaatgta cttaaaaccg taaaagtgta cttaattgta aactcagaaa 7021 gacacacgca acgagaatgg attacaaatt gaattcaaat aaaataacga tgaaagaaca 7081 aacaa