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LOCUS XM_017138493 3042 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_017138493 VERSION XM_017138493.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017138493.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3042 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3042 /gene="Ubqn" /note="ubiquilin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108055220" CDS 185..1798 /gene="Ubqn" /codon_start=1 /product="ubiquilin-1" /protein_id="XP_016993982.2" /db_xref="GeneID:108055220" /translation="MAEGGSKRINVVVKTPKDKKTVEVDEDSGIKEFKILVAQKFEAE PEQLVLIFAGKIMKDTDTLKMHNIKDNLTVHLVIKAPTRNNEAPARQPADVRQTPFGL NQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPLVQQMMNNPDTMRQ LITSNPQMQDLMQRNPEISHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESV PGGYSALQRIYRDIQEPMMNAATESFGRNPFAGLVDGGLGAGINPQQGTENRNPLPNP WGGGGGANSGTNGTGTANRTGDLPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPYTR SMMESMSQDPDMASRLLSSSPLLSNNPALQDQVRQMMPQFMAQMQNPEVQNMLTNPDA MNAILQIQQGMEQLRSAAPGLVGTLGIPPPPPGVGNTDADPASGDGGSTTNNASPNAA NPVPSLAPGGGPNAQLFNDFMMRMLNGMSNNADGTQPPEVRYQSQLEQLAAMGFGNRD ANLQALIATFGDINAAVERLLSLNQLSLS" misc_feature 203..421 /gene="Ubqn" /note="ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins; Region: Ubl_PLICs; cd01808" /db_xref="CDD:340506" misc_feature order(224..226,335..352,398..409,413..415,419..421) /gene="Ubqn" /note="Pru interaction site [polypeptide binding]; other site" /db_xref="CDD:340506" misc_feature order(314..316,323..325,335..337,341..352,356..358, 407..409,413..421) /gene="Ubqn" /note="putative S5a binding site; other site" /db_xref="CDD:340506" misc_feature 1655..1765 /gene="Ubqn" /note="UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins; Region: UBA_PLICs; cd14399" /db_xref="CDD:270582" misc_feature order(1685..1702,1748..1750,1757..1765) /gene="Ubqn" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270582" polyA_site 3042 /gene="Ubqn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cctggcgaaa atcgaaccca gcgtatgtgt gcgagcgaac gggcgtgcgt gtgtgtgtgt 61 ccagagcagc cgacgaaaaa ttgcagttgt gacacaattt ggacaccccc ccacccgaaa 121 cacgagctaa atcggcgcag gcaaagacca gagacacggc gaaggcgaca agaagagcag 181 cgaaatggcg gaaggcggca gcaagcgcat caacgtggtt gtgaaaacgc caaaggacaa 241 gaagacggtc gaggttgacg aagattctgg aataaaagag ttcaaaattc tggtggcaca 301 aaagttcgag gcggagcccg agcagctggt gctcatcttc gccgggaaga tcatgaagga 361 cacggacacc ctgaagatgc acaacatcaa ggacaacttg acggttcatc tggtgatcaa 421 ggcgccgacg cgcaacaacg aggcgcccgc ccgccagccg gcggatgtcc gccagacgcc 481 ctttggcctg aatcaattcg gtggcctggc gggcatggag gcactgggtg ccggatcgaa 541 taccttcatg gatctgcagg cacgcatgca gaacgagctg ctcaataatg gcgatatgct 601 gcgatctctg atggacaatc cgctggtgca gcagatgatg aacaatccgg acacgatgcg 661 ccagctgatc acgtcgaatc cgcagatgca ggatctgatg cagcgcaacc cggagatctc 721 gcacatgctc aacaatccgg acctgctgcg ccagacaatg gagctggccc gcaatccctc 781 gatgctgcag gagctgatgc gttcgcacga tcgggccatg tccaatctgg agtccgtgcc 841 gggcggatat agtgcgctgc agcggatcta ccgcgacatc caggagccga tgatgaacgc 901 cgccaccgag tcctttggcc gcaatccctt tgccggcctg gtggacggcg gcctgggcgc 961 tgggatcaat ccgcagcagg gcaccgagaa ccgcaacccg ttgccgaatc cctggggcgg 1021 cggtggaggt gccaattccg ggacaaatgg cacaggcacc gccaatcgta ctggagatct 1081 gccgcccaac aatgtcctca acacgccggc catgcgcagc ctgctccagc agatggccga 1141 caatccggcc atgatgcaga acctcctgaa cgccccctac acgcgttcca tgatggagtc 1201 catgtcgcag gatccggaca tggcatcgcg cctgctgagc agcagccccc tgctgtccaa 1261 taatcccgct ctgcaggatc aggtgcgcca gatgatgccg cagttcatgg cacagatgca 1321 gaatcccgag gtgcagaaca tgctgaccaa tccggacgcc atgaacgcca tcctgcagat 1381 ccagcagggc atggagcagc tgcgcagcgc ggccccggga ctcgttggca ctttgggcat 1441 tccgccgccg ccgccaggag ttggcaacac ggatgcggat ccggccagcg gtgatggtgg 1501 aagcaccacc aacaatgcct caccaaacgc cgctaatccc gtgcccagct tggcaccggg 1561 tggcggtccg aatgcgcagc tcttcaacga cttcatgatg cgcatgctca acgggatgtc 1621 gaacaacgca gacggcacac agccgcccga ggtgcgctac cagtcgcagc tggagcagct 1681 ggcggcgatg ggcttcggca accgggatgc caatttgcag gccctgatcg ccacctttgg 1741 ggacatcaat gcggctgtgg agcgacttct gtccctcaac cagctgtccc tgagttaaca 1801 acgctaagcc atttccaaac tgtacacaac ctgtctatat atctaccaac tacatctata 1861 tatctaacac tatagccctg gagaacgcga atgatacgat gataacgatt gatgatgatg 1921 atgatgagaa aggggggaaa cacacacaca aaaattccat gctgattgct tattcccctt 1981 attaagccgg aaatatcttg aatccttcat gaccatacaa cacacaaaac acacaacaaa 2041 aataggagcc tggagaacgg agagatatta cggatggata tgatagaaga gcatagatag 2101 agatcgcata ccaaagtgtc ggcacttgcg tagttgatat cattattttt ttttaattat 2161 ttactttttc gagggctcta aagcggaaac cccaattgaa tatgcgccac gaagcatata 2221 tattatatat ctccagacaa aacacacaat tccccaacag agacaaccta gaatttcaat 2281 aaatttccaa caggttggtg ctctcccttg tcattattga tgtaactata tatatatcga 2341 tgtaaattcc agttgtgtgc ttgaggaaga aacgaacgag gttctaagga tactgggttt 2401 tttttttcat ttggctcccc catccgattc cccctccctt ttctcgccaa gtgctacagt 2461 agatatcggc tatatgcaat ggaatatgta tacaagcaat acgagtagtc aaaatggtta 2521 tcgattcgtt aatacaccta agagtaatct cccagcgtta tctaacctta agccatccgt 2581 ttaagagaat caaaatgtat aaagttgcgc actagcggta tctactgtag gtccacaagt 2641 gtgtacatag ggtatatagt aggtacatcc aaatattcca tggtgttgac aaaaaaaaag 2701 acgtgaaagc tatttaaaat tcctatttaa aactctaagc atataaccga ctctttggga 2761 acttcttttg gatcttctgg ggttccgatc cctcaattca cacacacaca ctataatata 2821 aaagcgtatg agttcaatgt ataccctgta agtactatta ccatatatgc gaggagtatg 2881 caggtgagcc aacttgaacg ggggaattgg gtgggtgggc agaaactgga gctggaccga 2941 tacgtttatt tgtttagtga aggaagaagg aagctaagta attaaatgta aatgatcaca 3001 tgttttaaaa cagtaataaa gctactttgg ttttagatta ta