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LOCUS XM_017138491 4672 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017138491 VERSION XM_017138491.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017138491.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4672 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4672 /gene="dome" /note="cytokine receptor domeless; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108055218" CDS 509..4249 /gene="dome" /codon_start=1 /product="cytokine receptor" /protein_id="XP_016993980.2" /db_xref="GeneID:108055218" /translation="MLLQALLVLVLTLAGWGEAKAVIVEPGWMIPGKVEQLIGGDLNI SCTLNEEYFRTSKDHCLVDQLYVSGGGQVYTGPQYIRILNNTTILFSVTNAAEQEHEY LCMCGEYVINKSMVYVGTSPLLVRDFNCLDYDFQFMVCNFTQPPNRVITKYNISYNTN NDWRYSNTLDCNFDSAPLVTCNLTDDNYKRFSETFYFRLYIVNALGHETQPITINHFE RLVPARPGQNLTMVNRTESSVCLSWEMPRRSNYNRGLTWQVAVDPQNFDTISRPSWLN NSSTIKDLLCLTELPFAGYNYTLRLRVRANQNNTLWSEPLIYAFATAPAPPRRPPRVT YGSFYVYSSETGMRFYWEALAAHELNGPDFRYVISEYRINGTEVDPGLIKVESNSAII DHWNMSAVHTFLIRSSNSQGVSVNATTMTIGPISNRDWQRVPRNIRAEYHSNNKSYTL SWQPPEDRAELQNYTVFWCVQKPGLLSECEGSIRFAEVSAGQLQFTTARDQLPTLHMA VSANYRTHNTGLRWVSCSSDKKDDLAKMEPSITVATDTTLTVNWDSKNVCPVILAGYN LTYCQRSTGRPDNCTTLKMDRYTTKHKIQNLVPYTDYSVKMLMYSESRASKYSDELVN RTGEAAPSQPRELQLLRVSSASVELAWKPPLLANGIVRSYEGAFRSLRDNVTETFRVS ADAEHLVDIEKPVNYRLGNLTAFTQYEVSVRARTVFSSEPSNVIFFSTAIGVPSAPKL QVTNDKDQSSRLDWEPPRMPAGRIDFYEISLRDNNASCLMSTILPGRNRSFVMATPRC TSHNPFQLAVRAINVEQHPQFDGLDAGALLLMSAAAGQQGCEAKTDALGDEERAQFEA YAANVTAYRLYRSDWDVYGFICTPDTHSVKAMYQTIEVTVAILVLGVIFYLVYKKYRK MSDIDLVLPQGIIETLKKQPMDMGGLSLGLGPDSSLGGGIVCTRVDDSPQYTPQDLPH DFSNFGSESSKLLLRTASSSGGGMEAAAGPPTSYLAMRHGLLVQNDMERQRERERERE QQQQQQQREEEREQRGAASGYIKPTQMKSWMGDPSENDDHDFSVPAAPQIPIGGYVPV PIPQSRLNPPPVQPPLQPATATAAAASTFFPPAHLLNLDNYVQASDLHKLKPLVAAPL PLPNGGASPPAAAAMRQLPPLPTAAAAPAPKLADLGYTTMEQLQRTGLAKPPLSAAAV GSPTHANAAGGGGAGGAHPQPQINGYVTPQDLNALAHNRHVL" misc_feature 2120..2365 /gene="dome" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature order(2351..2356,2360..2365) /gene="dome" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature 2399..2698 /gene="dome" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(2399..2401,2618..2620,2660..2662) /gene="dome" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature order(2663..2668,2672..2677) /gene="dome" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature 2711..>2839 /gene="dome" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" ORIGIN 1 cgatactgcg ataagtttcg ataagctggg cggtcacact gcggaccaga aaataaccaa 61 accaaaagca aaaaacgcga gcgggggcag ggaggagagc gatcgccgtc cttagccaac 121 tgaggattca aatctgcaaa tctgcaagcg aacataaacg ataaataaga cacagttatt 181 ggccaaaagc gcatattaac ggtagtccct gtacagtaga cgatagccag tgaaaaaggc 241 agcccccacc tgggcagtga aatgtttaag agccacttcc aggaacgcag cgtatgaacg 301 tataaacggt ttccgagaac tgtccaccaa tacagacagc caacaagtgc cacggccagc 361 aaggtgattt agtgtgtgtg cgagagagag agcggcgtgt cggtgtgcgc gtgtgcctgc 421 tagtgtgtga gtgaggaaga gaggagagga gagattagag tggaccttga cagcggcata 481 gcggcagctg gagaggatta ggattaagat gttgctccag gcgctgctcg tgctcgtgct 541 caccctcgcc ggctggggcg aggccaaggc ggtcatcgtg gagcccggct ggatgattcc 601 cggcaaggtg gagcagctca tcggcggcga tctgaacatc agctgcaccc tcaacgagga 661 gtacttccgc accagcaagg atcactgcct cgtcgaccag ctgtacgtga gcggcggcgg 721 tcaggtatac accggtcccc agtacatccg catcctgaac aacaccacca tcctgttcag 781 cgtcacgaat gccgccgagc aggagcacga atatctgtgc atgtgcggcg agtatgtgat 841 caataaatca atggtttatg tcggaaccag cccgctcctg gtgcgcgact tcaattgcct 901 ggactacgac ttccagttca tggtctgcaa cttcacccag ccgcccaaca gggtcatcac 961 caagtacaac atcagctaca acaccaacaa cgactggcgc tacagcaaca ccctggactg 1021 caacttcgat tcggcaccgc tggtcacctg caatctcacc gatgacaact acaagcgctt 1081 cagcgagacc ttctacttcc gtctgtatat cgttaatgcc ttgggtcacg agacccagcc 1141 catcacgatc aatcacttcg agcgtttggt tccggcgcga cctggtcaaa acctgaccat 1201 ggtcaaccga acggagagct cggtgtgcct ctcgtgggag atgccgcggc gctccaacta 1261 caatcgcggc ctcacctggc aggtggccgt cgatccgcag aacttcgata ccatcagccg 1321 gcccagctgg ctgaacaata gctcgaccat taaggatctg ctctgcctca cggagctgcc 1381 ctttgccggc tacaattaca cgctgcgcct gcgcgtgcgc gccaaccaga acaacacgct 1441 gtggagcgaa ccgctgatct atgccttcgc caccgcgccg gcgccaccgc gtcgtccgcc 1501 gcgcgtcacc tacggcagct tctatgtcta ctcctcggag acgggcatgc gcttctactg 1561 ggaggccctg gctgcccacg agctgaacgg cccggacttt cgctacgtca tcagcgagta 1621 ccgcatcaat gggacagaag tcgatcctgg cttgatcaag gtggagtcca actcggcgat 1681 aattgaccac tggaacatga gcgccgtgca caccttcctc atccgcagct ccaacagcca 1741 gggtgtgtcc gtgaacgcca ccaccatgac gatcgggccc attagcaacc gggactggca 1801 gcgcgtgccg aggaacattc gcgccgagta ccattcgaac aacaagagct acacgctcag 1861 ctggcagccg ccggaggatc gggcggagct gcagaactac acggtcttct ggtgcgtcca 1921 aaagccgggc ctcttgtccg agtgcgaggg atccatacgc ttcgcggagg tctccgccgg 1981 ccagcttcag ttcaccacgg cccgcgacca gctgcccacg ctgcacatgg ccgtgtcggc 2041 caactatcgc acccacaaca cgggtctgcg gtgggtgagc tgcagcagcg acaagaagga 2101 cgatctggcc aagatggagc cctcgatcac ggtggccacc gacaccacgc tgactgtgaa 2161 ttgggactcg aagaacgtct gcccggtgat cctcgccggc tacaatctga cctactgcca 2221 gcgatccacc ggaaggccag acaattgcac caccttgaag atggatcgct acaccacgaa 2281 gcacaaaatc cagaatctgg tgccctacac cgactacagc gtcaagatgc tcatgtactc 2341 ggagtcgcgg gccagcaagt acagcgacga gctggtcaac cgcaccggcg aggcggcgcc 2401 cagccaaccg cgggagctgc agctgctccg tgtgagcagc gccagtgtgg agctcgcctg 2461 gaagccgccg ctgctcgcga acggcattgt ccgctcctac gagggcgcct tccgctcgct 2521 gcgcgacaac gtcaccgaga cattccgcgt gagcgccgac gccgagcatc tggtggacat 2581 cgagaagccc gtcaactacc ggctgggcaa tctcacggcc ttcacccaat acgaggtgag 2641 cgtgcgggcg cggacggtct tctcctcgga gcccagcaac gtgatcttct tcagcacggc 2701 catcggagtt ccctcggcgc cgaagcttca ggtgacgaac gacaaggacc agagctcgcg 2761 actcgactgg gagccgccga ggatgccggc ggggcgcatc gacttctacg agatctcgct 2821 gcgcgacaac aacgccagct gcctgatgag caccatcctg ccgggccgga atcgttcctt 2881 tgtcatggcc acgccgcgct gcaccagcca caatcccttc cagctggcgg tgcgggccat 2941 caatgtggag cagcatccgc agttcgatgg cctggatgct ggtgccttgc tactcatgtc 3001 ggcggccgcc ggccagcagg gatgcgaggc caagacggac gcactgggcg acgaggagcg 3061 ggcgcagttc gaggcgtatg cggccaacgt gaccgcctat cggctgtaca gatccgactg 3121 ggatgtctac ggattcatct gcacaccgga cacgcacagc gtgaaggcca tgtaccagac 3181 gatcgaggtg accgtggcca ttctggtgct gggcgtcatc ttctatctgg tgtacaagaa 3241 gtaccgcaag atgtccgaca ttgatttggt gctgcctcaa ggaatcattg agactttgaa 3301 gaagcagccc atggacatgg gtggcctgtc cctcggcctc ggtcccgact cgtccctcgg 3361 cgggggaatc gtgtgcaccc gcgtggatga ttcgccgcag tacacgccgc aggatctgcc 3421 gcacgacttt agcaactttg gcagcgagag ctccaagctg ctgctgcgca cagcctcctc 3481 ctcgggcggc ggcatggaag cagcggcggg accaccaacc agctatttgg ccatgcggca 3541 cggcctgctc gtccagaacg acatggagcg gcagcgggaa agagaacggg aacgggagca 3601 gcagcagcag cagcagcaga gagaggaaga gcgagagcag cgaggcgccg ccagtggcta 3661 catcaagccc acgcagatga agagctggat gggagatccc tccgagaatg atgatcatga 3721 cttttcagtt cctgctgctc cacagattcc catcggcggc tacgtaccgg tgcccattcc 3781 gcagtcgcgc ctcaatccgc cgcctgttca gcctcctctt cagccagcca ccgccaccgc 3841 tgccgctgcc tccaccttct ttccgcccgc ccatctgctc aacttggaca actacgtgca 3901 ggcctcggat ctgcacaagc tgaagcccct ggtggccgcg ccgctgcctc tgccaaacgg 3961 aggagcttcc ccaccagcag cagcagcaat gcgccagcta ccgccactcc caactgctgc 4021 ggctgcacct gctcctaagc tggccgacct gggctacacc accatggagc aactgcagcg 4081 cactgggcta gcaaagcctc cgctatccgc cgccgccgtg ggatcaccga cgcacgccaa 4141 cgccgccgga ggaggaggag caggaggcgc ccatcctcag ccgcagatca atggctatgt 4201 gacgccccag gatctgaacg ccctggccca caatcggcac gtcctctaag ctgttcggag 4261 cggattttaa cagaagaaga aaaggaaacc ctcgcgttcg catccagcat tcaactctct 4321 catccccaag cgcaatcatc aaccggaatg tcccgaatcc aggcagctgt ttttagtaat 4381 tagtgctcca ctcctcggac gaatgtagtt ctttcgtttg taatttattt tatattcttt 4441 gcgatgcgtg cgaggcagaa aggcaaaaag gcagacaggc agaagtattt gtaacgctat 4501 agtatttttt ttatatatat acatattcgt actgtacact tacacccaac ttaaccatcc 4561 gcgcgtcgag cagatcgaac agatcgacca gagcttataa tattaatatt aataccctat 4621 gtacaccata cgcacatcgc ggcgctgtat gtcaacataa agctaatttt aa