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LOCUS XM_017137882 3915 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017137882 VERSION XM_017137882.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; corrected model. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137882.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3915 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3915 /gene="ctp" /note="cut up; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054804" CDS 228..1016 /gene="ctp" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon" /codon_start=1 /transl_except=(pos:495..497,aa:OTHER) /product="LOW QUALITY PROTEIN: uncharacterized protein ctp" /protein_id="XP_016993371.2" /db_xref="GeneID:108054804" /translation="MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKK EFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSGXSIVESDEVVVRR LMEMQQQQQQQQSHFGASEDEDLEQKQQQPHNQQQQQTTQHQQKQEQPQQEHLKDAEM MTDKPEEELKEKDQQHTEDSDMELTDDQDVDETETDLDGENDQEAEGGGGSGDEDEDE DGTIVEDSDATSCSSCRRAELEENQEDQEPPPTASPQKHKDDVN" misc_feature 240..491 /gene="ctp" /note="dynein light chain (DLC)-like domain found in the cytoplasmic dynein light chain 1 (DYNLL1) family; Region: DLC-like_DYNLL1_DYNLL2; cd21452" /db_xref="CDD:412000" polyA_site 3915 /gene="ctp" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgcttctgc ttgaggggaa aagtcgttcc aggactgaaa ataagcgtac aaaaatatcg 61 agttaatcgg aaattaatcc cgtccatctg ttcctgaagg aaggatccgc tgaaatcgga 121 gagttacaga agtcaagcag ctaaacaaaa aaagcgccat tttcaaaaca attggatccg 181 agtgaagttg taaagacaag aacacagagt aaaaaaaatc agccaaaatg tctgatcgca 241 aagcagtgat taaaaatgcc gacatgagcg aggagatgca gcaggatgcc gtcgattgtg 301 cgacacaggc cctcgagaag tacaacattg agaaggacat tgcggcctac atcaagaagg 361 agttcgacaa aaaatacaat cccacatggc attgcattgt gggccgcaac tttggatcgt 421 atgtcaccca cgagacgcgc cacttcatct atttctattt gggccaggtg gccattttat 481 tgtttaagag cggttaaagt attgtcgagt cggatgaagt ggtggtgagg aggctgatgg 541 agatgcagca gcagcagcag cagcagcagt cgcatttcgg ggcatcagag gacgaggatc 601 tagagcagaa acagcaacaa ccacataacc aacaacaaca gcaaacaaca cagcaccaac 661 aaaaacaaga acaaccacaa caagaacatc tcaaggatgc ggaaatgatg accgataagc 721 cagaagagga gctgaaagaa aaagaccaac aacacacgga agattcggat atggaactaa 781 ctgacgatca agatgtagac gaaactgaaa cggatttgga tggggagaat gaccaggaag 841 cagaaggtgg cggcggcagc ggcgacgagg atgaggatga ggatggcacc atcgtagaag 901 acagcgatgc caccagctgc agtagttgtc gtcgcgccga actggaggaa aatcaggagg 961 atcaggagcc accaccaact gcttcccccc aaaaacataa agatgatgtc aactagatcc 1021 gtagacgata tctttcgatt ccctcccctc aaataaagaa gatacgcgca cgcaccattt 1081 tagcttgtct atcgaatgca agaaatacct atttgttggt ggtattcctt acatcattat 1141 atgccgctct ggaaaactcg aaaggcggcg aaaatcataa aaaaagagcg attattatgt 1201 ccacacaatt atacactcga agaaaagaaa ttgtagacaa gcatgaacca acgctgttta 1261 gttttgaaat caccatttcc ccatcccaaa cctttaagaa ttggtcattt ggattgcatt 1321 cgcgccccat gattctaact tctgttgaaa tttctcattt ttctttcttt aatttttttt 1381 ttttttggct acaaatgtat gatgtgctgg cgctttgttt ggccttataa tttatttata 1441 aaacctgcaa atgcgtaatt aaacaattgt taactagaaa ttaaccaaaa accatgtgtt 1501 gtatttattt gtatagtttt tatgatttta tttcaaattc gttggagctc agcagaggca 1561 agaaccacac acacacacac acacacgtac acatagcaca ggcaacaacc accactacaa 1621 ccgaacgagc aaagtaagaa aagaattaaa aaagaaaatt gtaaggaaaa ctcacatatt 1681 tttctgtccg atggattatt tatgtgtatt gaactctcct ctcaacactt gtaaacggaa 1741 accaagcaga aaaaataaga aaaaaatagt ataatgtgaa atttgcatac acaccatgca 1801 cacacacaca ctaacacgct cacagacact ctctgcacac ctaatagata cacagagaaa 1861 aatatcatga atttggcata tgctttcccc attcaaattg tatttttctt accatattct 1921 gtattttgga agatataata ttttttaatt attaaaaaat tacgaaatga cgctttttag 1981 cttttaaata tttcaaatat tttcttgttt ccaaattaat atttgttata actcaatagg 2041 tgcttctatt atatggaaat tactttaaaa tttgttttaa aacaaattat ttttttcagg 2101 ataggaacaa attggaaata aattagatat gataaacaga gaattttttt ttcctgataa 2161 gttaaggttt ttaataagag attattttaa aatgattaac ttctttttcg ttgtgtgtac 2221 ttaagcaatg ttttattcat tgcttacgtg taaagcaaat cgccccaaaa ggcctccttt 2281 tttcgccgat ttactccttt ctatccgtta ttttctagcc aaatctcctt tttgctttcc 2341 ctggactttt ccaagaacaa tatgaaacaa gaaaatacaa caaattacaa gcaaatcgaa 2401 tattatgtgt gtatgtgtat atgtttgtgg agaattttat ggagagtttt tttgggcggc 2461 gcagcaaagt atgcaacaaa aatttttgta gaaactgcaa gcagcaatat aacaaataaa 2521 aatgccaaaa aaaaagcgga gaaagccgaa agaaaatgca aatgcaaaga aagcaaaaac 2581 aaaagacaaa aaccaagaat aagaacaacc gaaggaaaat atatttatca tcttgtcgtt 2641 tatataaatg tgtgctatgt gtttcttcga gtcggactta tgttatgcag ataaacagaa 2701 gaacaaacag taaggattta aaataaatga aatttaaagg aatgaaagcg aacagtaata 2761 agaaacgtgg aaaccaaaaa taaatatata tattcatgca agaaatacaa aataaagtaa 2821 acattggtgt aaaataagca agaacttaag taaaacctac taaaaaacaa aaattgaagc 2881 ttaatacgta atttcctaac aacaacaaac acaacaacag aagacattta catatgcagc 2941 actcacatac acacacactc gcaaacgaaa ggacacggac gtccatttac cgttactttt 3001 cacacacaca cacacacaca gcacctctct ctctttcccc ttttggctat tgcgttttag 3061 attattattg ctcagcacgt ttttgcgtag accacacaaa actatttatg ctaacggtaa 3121 gatacgacct cctctctctc acccacactc acaaaaacac acaacactca caaaaacaaa 3181 aagaagaaga cgagaaaagc gtaatttttt ttccaaaaaa atcggaatgg cgaatttcta 3241 acgggaaaga aaacacaaga aacacacacg ataacttcta ataagtgttt atatatacaa 3301 atatatatat atgtatacat ataaaaaaag gataaaagag cataattttt tgtcataatg 3361 caaaatattt gtgtgagaaa ccaatttttg atgtaacgga aaaccgaaaa ccagaaaaac 3421 gcgcgataaa attaacggta aaagggcaaa agagaaaaga aagtgaaaaa ttaatttgtt 3481 tccttagttt ttcccaatcg attgatccat ttcctcattt tccgttagta acttcaaaaa 3541 ctcaaatatt ttagctgcca tttctgaata caaaaaaaaa aaaccaaaaa ccaaaaaaaa 3601 aaccgagaaa ctaacaaata taaaaactag tttaaaaact tagttcgtaa accttttatt 3661 tcgtttaatc tgttaaattc tactttgtct atttctattt aactggtttt ttgtgcaaga 3721 aacaaacatt acttaagttt ttgtaagaga ttagtaaatt atgtgtgttg agggcgatat 3781 aaggcagaat tagcgactgc gatcgcgaac gcggatttat ggaggcaatt tcaagtaaca 3841 atacgagtaa gaaatgagaa agcaagcaaa aaccaaatga gatcttcaat gtgaaataaa 3901 agtacttctt tgaaa