PREDICTED: Drosophila takahashii HMG box-containing protein 4

LOCUS       XM_017137848            1617 bp    mRNA    linear   INV 09-DEC-2024
            (LOC108054779), mRNA.
ACCESSION   XM_017137848
VERSION     XM_017137848.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017137848.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1617
                     /gene="LOC108054779"
                     /note="HMG box-containing protein 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:108054779"
     CDS             123..1400
                     /gene="LOC108054779"
                     /codon_start=1
                     /product="HMG box-containing protein 4"
                     /protein_id="XP_016993337.2"
                     /db_xref="GeneID:108054779"
                     /translation="MESPTSHLVAKDFQVTGVSRSGRVRKKSSKLLDFESPEEIEKRT
                     RRQSGGRQTSRYSGRGRPSNALRDLDLDQEMLVDEPNISEGEEFQHPETPTAAAAVLN
                     SDDELDNLVQDLVDGVQAEATSQASPTVRQSLYMREKANKRKVLKDGKVVNAKVQRKD
                     KGKQRYTAYSLWAREARKRDLQDLDFTSATRRLSEMWANVSNRDKNAWRRKAKIQASR
                     ARSRDRTAPNGAPQAASNGSSTALALAEPSQHETIFQNRATTSRTRKLAADRQQSSLD
                     AAAAAAAAAGASTSSQRRSISTRSGRSQASTSGAAKQQQSPGEAEVGSRSGAGHQRHE
                     ESHKTSIEVIDAAAHLKLLGESLTVIGERLKKHNGYVALSGSLSVLLDSLLCAMGPLL
                     CMTTQIPGLENKVELSKNLADTLDNIAYVMPGL"
     misc_feature    621..761
                     /gene="LOC108054779"
                     /note="high mobility group (HMG)-box domain superfamily;
                     Region: HMG-box_SF; cd00084"
                     /db_xref="CDD:438789"
     polyA_site      1617
                     /gene="LOC108054779"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gctccgataa atcccagccc taagatctgg tcacaccaat cagctgttcc atttgcgtcg
       61 tttaatttgt ttttcttttt acaacaaatt gcatccgaat cttccaaatc ggggatccaa
      121 aaatggagtc gcccacctcg cacctggtgg ccaaagattt ccaggtgaca ggcgtttcgc
      181 gcagcggacg cgtacgcaaa aagtcgtcga aactgttgga tttcgagtcg ccggaggaga
      241 tcgagaagcg gacgcggcgc caaagtggcg gcaggcaaac ctctagatat tccggacgcg
      301 ggcggccgtc gaatgcgctg cgcgacctcg atctcgacca ggagatgctc gtggacgagc
      361 cgaacatctc cgagggcgag gagttccagc acccggaaac gccgaccgcg gcggccgccg
      421 tcctgaactc cgacgacgag ctggacaacc tggtgcagga tctggtcgac ggcgtccagg
      481 cggaggccac cagccaggcg tcgcccaccg tccgccagag tctctacatg cgcgagaagg
      541 ccaacaagcg caaggtgctc aaggacggca aggtggtgaa cgccaaggtg cagcgcaagg
      601 acaagggcaa gcagcgctac accgcctaca gcctgtgggc cagggaggcg cgcaagcggg
      661 acctccagga tctggacttt accagcgcca ccagacgtct cagcgagatg tgggcgaacg
      721 tgtcgaatcg ggacaagaac gcctggcggc gcaaggccaa gatccaggcg tccagggcca
      781 gatcgcgcga caggacagct ccgaatggcg ctccgcaggc ggctagcaat ggcagcagca
      841 cggccttggc tttggccgaa ccctcgcagc acgagacgat cttccagaat cgggcgacga
      901 cgagtcgtac acgcaaattg gccgccgatc ggcagcaatc ctctctagac gcggcggcgg
      961 cggcggcagc agcagcaggg gcgagtacct cgtcgcagag gcgcagcatt agcacacgga
     1021 gtggcaggtc gcaggcctcg acgagtgggg cggcgaaaca gcagcagtcg cccggggagg
     1081 cggaggtggg cagtaggagt ggagctggtc accagaggca cgaggagtcg cacaagacca
     1141 gcatcgaggt gatcgacgcg gcggcccatt taaaactctt gggcgagagc ctcacggtga
     1201 tcggcgagcg gctgaagaag cacaacggat acgtggccct ctcgggcagc ctgtccgtgc
     1261 tcctcgacag cctgctctgc gccatgggac cactgctctg catgaccacg cagattccgg
     1321 gactggagaa caaggtcgag ctgagcaaaa acctcgccga caccctggac aacatcgcct
     1381 acgtaatgcc gggactctaa tttcgggata tcataggaac catacctaca ccataccagg
     1441 cagctgagct tccaacgggg ggctgaaatc gccatcggat atatatgtta attaagaatt
     1501 agccgtcaag cagagaactt aaatttaccc actaaatatc cttagttata agcagctaaa
     1561 gcatctcgat cttgaataag taaaactatc tatgccagat cgcaaggtca ccctcta