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LOCUS XM_017137613 2604 bp mRNA linear INV 09-DEC-2024 (jub), transcript variant X1, mRNA. ACCESSION XM_017137613 VERSION XM_017137613.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137613.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2604 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2604 /gene="jub" /note="LIM domain-containing protein jub; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054572" CDS 298..2373 /gene="jub" /codon_start=1 /product="LIM domain-containing protein jub isoform X1" /protein_id="XP_016993102.2" /db_xref="GeneID:108054572" /translation="MTTQRTHTQARNAGNSESDYETLMQRLHIGGAGGGGGGGAPGDG GVAMRSYQRSPGAIEQQQMQMQNLHHHNHNHSQDYKLYERGNIIAASKYATPRPVEQL QQLQQPHGHNGSAHIYAPTAQILGQRIAPQKHSPVYENLEFYGQFDSNHKRAQPQSPG SRQSAMLNDYLLMQPIGAGRFAHTPVPESQVVPSRGRSAVLGPTADLEEHAAPIYENI IPHSGQRAQPQASPATATMYQEMQPASNSSDLNALLASPMHQRSISSSNTASSSSLGS PTQRYRNLSLPSHLSPVPTAQSVAKLQQHTPIKSPGGGAINVSVNPNYIEDINSSDYV CMTANLHRNTAAAAAATGATAQRSIQEPAKISSSLAKGVATAAAPVTSVAPVAAAPQP TPPSIASLRATPIAMTAPLAVATSPTPSQGSTGLTKNLLPYSVTPPRPAGPTEAQRKI EELTRQLEEEIEQSEEHGEYFGICHTCGEKVKGAGQACQAMGNLYHTNCFICCSCGRA LRGKAFYNVHGRVYCEEDYMNSLLQYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPG CFRCCVCNECLDGVPFTVDVDHKIYCVNDYHRMFAPKCASCGKGITPVEGTDETVRVV SMDKDFHVDCYICEECGMQLTDEPDKRCYPLDGRLLCRGCHLQRLALQSSPHARHQEP VCASYQYMG" misc_feature <850..1560 /gene="jub" /note="translocon at the inner envelope of chloroplast subunit 62; Provisional; Region: PLN03209" /db_xref="CDD:178748" misc_feature <1384..>1635 /gene="jub" /note="Herpes virus major outer envelope glycoprotein (BLLF1); Region: Herpes_BLLF1; pfam05109" /db_xref="CDD:282904" misc_feature 1717..1878 /gene="jub" /note="The first LIM domain of Ajuba-like proteins; Region: LIM1_Ajuba_like; cd09352" /db_xref="CDD:188738" misc_feature order(1717..1719,1726..1728,1783..1785,1792..1794, 1801..1803,1810..1812,1864..1866,1873..1875) /gene="jub" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188738" misc_feature 1927..2085 /gene="jub" /note="The second LIM domain of Ajuba-like proteins; Region: LIM2_Ajuba_like; cd09355" /db_xref="CDD:188741" misc_feature order(1927..1929,1936..1938,1987..1989,1996..1998, 2005..2007,2014..2016,2071..2073,2080..2082) /gene="jub" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188741" misc_feature 2107..2292 /gene="jub" /note="The third LIM domain of Ajuba-like proteins; Region: LIM3_Ajuba_like; cd09438" /db_xref="CDD:188822" misc_feature order(2107..2109,2116..2118,2188..2190,2197..2199, 2206..2208,2215..2217,2278..2280,2287..2289) /gene="jub" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188822" polyA_site 2604 /gene="jub" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggtcacact gcacaaataa attttttccc acggtccgaa ttttttgatt ttccgctgca 61 ggcacacaaa gaaaatgctg aaaagctgaa agtattaagg aaaagccgac tgactgactg 121 ccaactagcc gcgcacagtt agctgaggtg tttttccgac cggggaaagc gaggaaatcg 181 tttgatttcg gggcggcgtc ccccccgcag agcgagacag caagagagga ggaggaggaa 241 gaagaagagg aggaggagta tcaggatcag gaggatatat atatatagat atatacgatg 301 accacccagc gaacgcacac gcaggcgagg aatgcgggga attccgagtc cgactatgaa 361 acgctgatgc agcgactcca cattggtgga gcaggagggg gagggggcgg cggagcccct 421 ggggacgggg gcgtggccat gaggagctac caacgctcgc cgggcgccat cgagcagcag 481 cagatgcaga tgcagaacct ccatcaccac aatcacaacc acagccagga ctacaagctg 541 tacgaacgcg gcaacattat agccgcctcc aagtacgcca cgccccgtcc ggtggagcag 601 ctgcagcagc tccagcagcc gcacggccac aacggcagcg cccacatcta cgcgcccacc 661 gcccagatcc tcggccagcg cattgccccg cagaaacact cgccggtgta cgagaacctc 721 gagttctacg gccagttcga ctcgaaccac aagcgtgctc agccgcagag tcccggcagc 781 cggcagagcg ccatgctgaa cgactatctg ctgatgcagc ccatcggggc ggggcgcttt 841 gcccacacgc cggtgcccga gagtcaggtg gtgccgtccc ggggacgttc ggcggttctg 901 ggacccaccg ccgacctgga ggagcatgcg gcgcccatct acgagaacat cattccccac 961 tccggccagc gggcgcagcc gcaggcctcg ccggccacgg ccaccatgta ccaggagatg 1021 cagcccgctt ccaactcgtc ggatctcaac gctttgctgg cctcgccgat gcaccagcgc 1081 agcatcagca gcagcaacac ggccagctcc agctccctgg gctcgcccac gcagcggtat 1141 aggaacttgt cgctgcccag ccacctgagt ccggtgccca cggcgcagtc ggtggccaag 1201 ctgcagcagc acacgcccat caagtcgccg ggtggcggcg ccatcaatgt ctccgtcaat 1261 cccaactaca tcgaggacat caatagctcc gactacgttt gcatgacggc caatctgcac 1321 aggaatacgg cggcggcggc ggcggccacg ggagccactg cccagcgaag catccaggag 1381 ccagccaaga tatcctcctc gctggccaag ggcgtggcca cggcggcagc accggtcacg 1441 tctgtggcac cggtggcggc agctccacaa ccaacgccgc catccatcgc ctccctgagg 1501 gccacgccca ttgcgatgac ggcgcccctg gcggtggcca catcgcccac tccctcgcag 1561 ggcagcacag gtctcaccaa gaatctgctg ccgtacagcg tcaccccgcc gcgtccggct 1621 ggcccgacgg aggcgcagcg gaagatcgag gagctcacgc gccagctgga ggaggagatc 1681 gagcagagcg aggagcacgg cgagtacttt ggcatctgcc acacctgcgg ggagaaggtg 1741 aagggcgccg ggcaggcctg ccaggcgatg ggcaatctgt accacaccaa ctgcttcatc 1801 tgctgctcct gcggacgggc gctgcgcggc aaggccttct acaatgtgca cggcagggtc 1861 tactgcgagg aggactacat gaactctctg ttgcagtact cgggcttcca gcagacggcg 1921 gagaagtgcg ccatctgcgg gcatttgatc atggagatga tcctgcaggc catgggcaag 1981 tcctatcacc cgggctgctt tcggtgctgt gtgtgcaatg aatgcctgga cggggtgccc 2041 ttcaccgtgg acgtggacca caagatctac tgcgtcaacg actaccaccg aatgtttgcg 2101 cccaagtgcg ccagctgcgg caaaggcatc acacccgtcg agggcaccga cgagaccgtg 2161 cgcgtcgtct cgatggacaa ggacttccac gtggactgct acatctgcga ggagtgcggc 2221 atgcagctga ccgacgagcc ggacaagcgc tgctacccgc tggacgggcg gctgctctgc 2281 cgcggctgcc acctgcagcg gctggccctg cagtcctcgc cgcacgcccg ccaccaggag 2341 cccgtctgcg cctcgtacca gtacatgggt tgaaaaatgg agaagaaacc aacgcaatca 2401 acttattcca attaacaata ttagcttaca aacagacaga agtgaaaaca aatgcattta 2461 cacgaaacga tcgccgagct ggtggcttct tttattttta ctagcatggc atttaggatc 2521 tccaagcgga aatctctgac tatttggggt gttcctgaga cctcgcggtg tctcaaatta 2581 tgcaataaag tactttactc tgaa