PREDICTED: Drosophila takahashii mitochondrial ribosomal protein

LOCUS       XM_017137604            1468 bp    mRNA    linear   INV 09-DEC-2024
            L38 (mRpL38), mRNA.
ACCESSION   XM_017137604
VERSION     XM_017137604.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017137604.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1468
                     /gene="mRpL38"
                     /note="mitochondrial ribosomal protein L38; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:108054568"
     CDS             71..1321
                     /gene="mRpL38"
                     /codon_start=1
                     /product="large ribosomal subunit protein mL38"
                     /protein_id="XP_016993093.2"
                     /db_xref="GeneID:108054568"
                     /translation="MSFGNLLMKSGLNPGVRGAQAGVLVAATRQGHTIRGKAPGVART
                     LEQRVQEETARDPEVLARVNIGFPQLRDSRSAQLKTRLEHLKAQRSSKQLEQLARSNK
                     LIIDLEQVQRTYVKTTGQHDLRLLADHYGIFEHLFGSAYFVPRVPLSIAHQLAGDRLA
                     PVYNGNVIKPAEASRAPQISFDGRVDPITGQEAATPSYWTLVASNPDAHYTNGQAECL
                     HWFIGNIPNGQVNEGQVLAEYLPPFPPRGVGYQRMVFVLYKQQERLDLSQYQLAKEDF
                     SNLEKRSFSTLDFYRQHQEQLTPAGLAFYQTNWDESLTQFYHDVLKRKEPVYEYDFPK
                     PYLADQKFFPLKQPFNLYMDKHRDQKQLNKEYLERKLAKTHPFEGPEKPLRFPNAHAI
                     RDVPSWLKTEIRKQRLGTGRVQDY"
     misc_feature    551..991
                     /gene="mRpL38"
                     /note="PhosphatidylEthanolamine-Binding Protein (PEBP)
                     domain present in eukaryotes; Region: PEBP_euk; cd00866"
                     /db_xref="CDD:176644"
     misc_feature    order(683..685,719..721,725..727,794..805,821..823,
                     827..829)
                     /gene="mRpL38"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:176644"
     polyA_site      1468
                     /gene="mRpL38"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cgccgttggt ctggtctggc aacgctagca aaacgcacta agaaaaacgc tcagctaatt
       61 ccaaaaaacc atgtcgtttg gtaatttatt aatgaaaagc ggcctaaatc cgggcgtgcg
      121 cggtgcccag gcgggcgtcc tggtggcggc cacccggcaa ggacacacga tccgcggcaa
      181 ggcgcccggc gtggccagaa cgctggaaca gcgggtgcaa gaggagactg ccagggatcc
      241 cgaggtgttg gcccgcgtta acatcggttt cccgcagctg agggattccc gctcggcgca
      301 gctgaagacg cgactggagc atttgaaggc gcagcggagc agcaagcaac tggagcagct
      361 ggcgaggagc aataagttaa tcatcgacct ggagcaggtg cagcgcacgt atgtcaagac
      421 caccgggcag cacgatctac gcctgctggc cgatcactac ggcatcttcg agcatctctt
      481 cggcagcgcc tactttgtgc cccgcgtgcc gctgagcatt gcccaccagc tggcgggcga
      541 ccggctggcg cccgtctaca atggcaacgt gatcaagccg gcggaggcct cccgggcgcc
      601 gcagatcagc ttcgatggtc gggtggatcc cattacgggt caggaggcag ctactcctag
      661 ctactggacc ctcgtggcca gcaatcccga tgcccactac acaaatggcc aggccgagtg
      721 cctccattgg ttcataggaa acatacccaa tggccaggtg aacgaaggcc aggtgctcgc
      781 cgagtatctg ccgccgttcc cgccacgcgg cgttggctac cagcgcatgg tctttgtgct
      841 ctacaagcag caggagcgcc tggatctgag ccagtatcag ttggccaagg aggactttag
      901 caacctggag aagcgcagct tcagcacctt ggacttttat cgccagcacc aggagcaact
      961 gacgcccgcg ggcctggcct tttatcagac caactgggac gagtcgctga cgcagttcta
     1021 ccacgatgtt ttgaaacgca aggaacccgt ctacgagtac gacttcccca agccctattt
     1081 ggccgaccag aagttcttcc cgctgaagca gcccttcaat ctgtacatgg acaagcaccg
     1141 cgaccaaaag cagctgaata aggagtacct ggagcgcaag ctggccaaaa cgcatccctt
     1201 tgaagggccg gaaaagccgc tgcgctttcc caatgcccat gccatacgcg atgtgccctc
     1261 ctggctgaaa actgagatta ggaagcagcg tttgggcact ggacgagtgc aggattacta
     1321 gattgttgtt taatagtggt taacaagttt tggtttctct ttattcactg gaagtacatg
     1381 cctcaaacgg gaaactacca actacatggt tatagcctaa ataaatatgg agaatcgtgt
     1441 gatgcgttaa caattgtccg gaagataa