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LOCUS XM_017137572 4735 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017137572 VERSION XM_017137572.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137572.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4735 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4735 /gene="mus101" /note="mutagen-sensitive 101; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054553" CDS 102..4301 /gene="mus101" /codon_start=1 /product="DNA topoisomerase 2-binding protein 1" /protein_id="XP_016993061.2" /db_xref="GeneID:108054553" /translation="MANKSGSRAHAATMSVSMDESICAYFVNNLKPGAEAQEASGEAL LEQFEASLELLSQQLAETQIRQIKPSEGYPLIAAGNLTKKDVFVLAHFEGDFFEQLQQ TRALILGPPCLLSCLRRNEPIPEGGSKAIYTTAMRDLQVSATGITPQKKEELSRLIHW MGGSYFQSFGHRTTHLIANTIKSSKYEQATLNGVPVMHVDWVQYVWEQSRRSQGDSFR ATDPDCDKYRLPIFFGANITCSGLDVARKDQVMRLVNENGGIYHRAFRSQVVDIVITE QSKTDTEKYKAAIRYKKDVLLPEWIFESCNRGYALPTKDYEVRAGKTAASTPTKSTRS VADQSQLSDLSRISFVSGSRRMCSDLTTVNESVSSGMGSPAKELLKQATASSRNYQQV LAEICPRQAKKAGAFLDGCCVYLSGFRSEEREKLNRVLNTGGATRYDEANEGISHIIV GQLDDADYRQWQSDGLMGSVHVVRLDWLLESIRAGRLVSELVHRVSLPQNREPDVASP ASKRTLRSMNHSFKQPTLPIKKKLFDQEADPVQQEEEEQPDHTLLDQYSQDQGAVAQL PPADVSLLQPAASSTQMEIRLRNSMVNPNPPAPLQQIPDLSASTLSIDFEKLDYFQGH SVYVHKDCFNAEFYQQMLTECETAQGLLVPSSFADEVDYAIVSFEVAFDAQELPVRAR NIVTELYLESCMKKNQLLPLEYYHQHVPAAALRQPLKGMTIVVSIYAGLERDFINSAA ELLGASVNKTFIKKEKPLLVCPTAEGSKYEGAIKWHYPVVTSEWLVQCARTGEKLPYV GHLVGQSPEDFPISPRLRESNARTNRTRPEEATLVAPPPLEEEENQPELTPLRNRRVS ELAGNPGGRLRSSGSSPDSPCTPLSQVGAQKYNLDFLEQFVQRLDTDEGKDCVREIIR EMQANQTPELERIRRQACTPISRKHPRPAPGIPDFCLTPEFQQRMADDFERRWRLPTQ KIKPDTPLAVIRQRVMRITCETLGIEYEEKQEEKEKEKEPPSTLKKKPPTRTQATKLN FDRSPKTPKLSVSKKTPLRASQSPFLVANTQSPRAAGAAASAESEEGQSTINFDKISF EESAAPLAAPPDVKQITDYLKNCESRRNSLKRSHDSDLVECPESEVQYVQPFESEGFA LHTEDMVDWRDPAEFNAAKRRSSGGGSPKMQYRGIPCFTISCGDDEEKREEVIQRIGQ LGGRLCENLINYDDNCSHLLCERPNRGEKMLACIAAGKWILNMQYIEQCHSRGYFLDE ALYEWGNPKALNLPALAPEEEPIAAAVHRWRTELSASGGGAFSHHRVILSLHERSGAP IRNVLRAGGASIVEAKSPFAADPLASTATHCFVDTRKAPLTQEDLTHLLQSGVQVLSQ MAINTYLMNGRDADLGKYEVK" misc_feature 507..722 /gene="mus101" /note="C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains; Region: BRCT; cl00038" /db_xref="CDD:469589" misc_feature 789..1025 /gene="mus101" /note="second BRCT domain of DNA topoisomerase 2-binding protein 1 (TopBP1) and similar proteins; Region: BRCT_TopBP1_rpt2_like; cd17731" /db_xref="CDD:349363" misc_feature order(816..830,840..842,888..902,948..953,960..962, 972..977) /gene="mus101" /note="Crb2 interaction site [polypeptide binding]; other site" /db_xref="CDD:349363" misc_feature 1305..1559 /gene="mus101" /note="third BRCT domain of DNA topoisomerase 2-binding protein 1 (TopBP1) and similar proteins; Region: BRCT_TopBP1_rpt3; cd17718" /db_xref="CDD:349350" misc_feature 2250..2489 /gene="mus101" /note="C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains; Region: BRCT; cl00038" /db_xref="CDD:469589" misc_feature 3645..3872 /gene="mus101" /note="seventh BRCT domain of DNA topoisomerase 2-binding protein 1; Region: BRCT_TopBP1_rpt7; cd17738" /db_xref="CDD:349370" misc_feature order(3657..3671,3681..3683,3780..3782,3786..3800) /gene="mus101" /note="BACH1 interaction site [polypeptide binding]; other site" /db_xref="CDD:349370" misc_feature 4023..4265 /gene="mus101" /note="C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains; Region: BRCT; cl00038" /db_xref="CDD:469589" ORIGIN 1 tgccagacag ctccgccagc ccgcgttgcc aactacctcg aagtcggcgt tgccaacgaa 61 ttcaaagcaa caacaaacgg cgccaaaata gcgttgcgaa aatggcaaat aaatccggga 121 gcagagcaca cgccgccacg atgagcgtga gcatggacga gtccatctgc gcgtacttcg 181 tgaacaacct gaagccgggc gcggaggccc aggaggcgtc tggcgaggcg ctcctggagc 241 agtttgaggc gtcgctggag ctgctatcgc agcagctggc ggagacgcaa atccggcaga 301 taaaacccag cgagggatat cctttaatag ccgctgggaa cctgaccaag aaggatgtct 361 ttgtgctggc ccacttcgag ggcgacttct tcgagcagct gcagcagacg cgcgccctca 421 tcctggggcc accctgcctg ctcagctgcc tgcgacgcaa cgaacccatt cccgagggcg 481 gcagcaaggc catctacacg acggccatgc gggatctgca ggtctcggcc accgggatca 541 cgccccagaa gaaggaggag ctcagccggc tcatccactg gatgggcggc agctacttcc 601 agagcttcgg ccaccgcacc acgcacctca tcgcaaacac catcaaatcc agcaagtacg 661 agcaggccac gctgaacgga gtgcccgtga tgcacgtgga ctgggtgcag tacgtctggg 721 agcagagtcg ccgcagtcag ggtgactcat tcagggccac cgatccggat tgcgacaagt 781 accgcctgcc catcttcttt ggagccaaca tcacgtgcag cggcttggat gtcgctcgca 841 aggatcaggt gatgcggctg gtcaacgaga acggcggcat ctatcatcgc gcctttcgct 901 cccaggtggt ggacatcgtc atcaccgagc aatcgaagac ggacaccgag aagtacaagg 961 cggccatacg ctacaagaag gatgtcttgc tgcccgagtg gatcttcgag agctgcaatc 1021 gtggttatgc tttgcccacc aaggactacg aggtgcgcgc cggcaagaca gccgcctcca 1081 cgcccacaaa gagcacacgt tccgttgctg atcagtcgca gctctcggat ctctcgagga 1141 tcagcttcgt ctccggctcg cggcgcatgt gcagcgatct gaccacggtc aatgaatccg 1201 tgagcagtgg catgggctcc cctgccaagg agctgctcaa acaggccact gcctccagca 1261 gaaactacca gcaggtgctg gccgagattt gtccgcggca ggcgaagaag gcgggagctt 1321 ttctagacgg ctgctgcgtc tatttgagtg gctttcgttc ggaggagcgg gagaaactga 1381 acagagtgct aaataccggg ggagccaccc gctacgacga ggccaacgag ggcatctcgc 1441 acatcattgt gggccaactg gacgacgctg actaccgcca gtggcaaagc gacggtctca 1501 tgggctccgt gcatgtggtg cgcctcgatt ggctgctgga gagcatacga gctggccgcc 1561 tggtcagcga gctagtgcat cgcgtgtcgc tgccgcagaa ccgcgaaccc gacgttgcct 1621 cgccggccag caagcgaacg ctgcgctcca tgaaccacag cttcaagcag cccacgctgc 1681 ccatcaagaa gaagctgttc gatcaggagg cggatcctgt gcagcaggag gaggaggagc 1741 agccggatca cacgctgctg gatcagtact cgcaggatca gggagcagtg gcccagcttc 1801 ccccggcgga tgtgagtctc ctgcagccgg cagccagttc cacgcaaatg gagatacgtc 1861 taaggaactc aatggttaat cccaatcccc cagctcccct ccagcaaata cccgatttga 1921 gtgccagcac tttgtccatt gactttgaga aactagacta ctttcagggc cactcggtct 1981 acgtgcacaa ggattgcttc aatgcggagt tctaccaaca aatgctcacc gaatgcgaga 2041 cggcccaggg tctgctggtc ccctcgagct tcgccgacga ggtggactac gccatcgtca 2101 gcttcgaggt ggccttcgat gcgcaggagc tgcccgtgcg ggccaggaat atagtcaccg 2161 agctgtatct cgagagctgc atgaagaaga accagctgct gccgctggaa tactaccacc 2221 agcatgtgcc cgccgctgca ctgcgtcagc ccttgaaggg tatgaccatt gtggtctcta 2281 tttatgcggg attggagagg gatttcatca actccgcggc cgaattgctg ggcgcctcgg 2341 tcaacaagac ttttatcaaa aaggagaagc cactgctcgt gtgtcccact gccgagggct 2401 ccaagtacga gggcgccatc aagtggcact atcccgtcgt cacctcggag tggctggtgc 2461 agtgcgcccg cacgggcgag aagctgccct atgtgggtca cctggtgggc cagagtcccg 2521 aggatttccc tatatcaccg cgtctgcggg agagtaatgc caggacgaac agaacgcgac 2581 cggaggaggc taccctggtg gctccgccgc cgctggagga ggaggagaat caaccggaac 2641 taacaccgct gcgcaatcgc agggtttccg agctggctgg aaatccaggg ggacgccttc 2701 gcagctctgg ctcctcaccc gactccccct gcacgccgct cagccaggtg ggcgcccaga 2761 agtacaacct cgacttcctc gagcagttcg tccagcggct ggacaccgac gagggcaagg 2821 actgtgtgcg cgagatcatc cgcgagatgc aggccaacca gacgccggaa ctagagcgaa 2881 ttcgtcggca ggcctgtact ccgatcagca ggaagcatcc tcgccctgcg cctggtatac 2941 ccgacttttg cctcactccg gagttccagc agcgcatggc cgatgacttc gagcggcgct 3001 ggcgcctgcc cacccagaag atcaagccgg acactccgct ggccgtcatc aggcagcggg 3061 tgatgaggat tacctgcgag actctgggca ttgagtatga ggagaagcag gaggaaaagg 3121 agaaggagaa ggagccacca agcacgctga agaagaagcc gcccacgaga acccaggcca 3181 ccaagctcaa ctttgataga tcccctaaaa cacccaagct ttctgtaagc aagaagacgc 3241 cgctgagggc cagccaatcg cccttcctgg tggccaacac acagagtcca agggcagccg 3301 gagcagctgc ctccgcagag agcgaggaag gccagagcac cattaacttc gacaagatca 3361 gcttcgagga gtcggctgct ccgttggcgg cgccgccgga tgtcaagcag atcaccgact 3421 acctgaagaa ctgcgagtcg cggcggaaca gtttgaagcg cagccacgac agcgacttgg 3481 tggagtgtcc agagagcgag gtgcagtacg tccagccctt cgaatcggag ggctttgctt 3541 tgcacaccga ggacatggtc gactggcgcg atccggccga gttcaacgcg gccaagcggc 3601 gatcctcggg cggtggttcg cccaagatgc agtaccgcgg cattccctgc ttcaccattt 3661 cgtgtggcga cgatgaggag aagcgcgagg aggtcatcca aaggattggc cagctgggcg 3721 gtcggttgtg cgagaatcta atcaactacg acgacaactg cagccacctg ctgtgcgagc 3781 gcccgaatcg cggcgagaag atgctggcct gcatagcggc gggcaagtgg atcctcaaca 3841 tgcagtacat cgagcagtgt cactcgcggg gttacttttt ggacgaggct ctgtacgagt 3901 ggggcaaccc gaaggccctg aatctgcccg ctttggcgcc cgaggaggag cccattgcgg 3961 cggccgtgca tcgttggcgc accgagctga gtgccagcgg cggaggagcc ttctcccatc 4021 accgggtgat cctcagtctg cacgagcgga gtggagcgcc cattaggaat gttttgcgcg 4081 ccggcggagc cagcattgtg gaggcgaagt caccatttgc cgcggatcct ttggcctcca 4141 ccgccaccca ttgctttgtg gacaccagga aggcgccgct gacgcaagag gatttgacgc 4201 atctcctgca gagcggcgtc caggtgctca gccagatggc catcaacacc tacttgatga 4261 acggccggga tgccgatctg gggaagtacg aggtgaagtg aagttccaat cgcctttttg 4321 ttcctgttcc aaattgatat tttcttttct agtttataca aaagttataa atttatagcc 4381 tcaagcggct tgaatttaaa ttagtttaat catgaatttt tttgtttttg tactgaaagt 4441 cgatttgtct ccaaattgaa catttaacca agcatgattt ataatttacc actgctaaaa 4501 agaatttgta caagtcaaca catctaattt gctggctttc tttttgtttc atttcataaa 4561 aatttttatt ttgaaaaaat aatcgaaaaa tatttcaagg acaaattggc tttcggtttt 4621 cttttcacta agtgtgtaat ttttatttct ttctatccaa gagatattta tttttgtgct 4681 attacttcat tccgattctt tattaaataa atgaaattat aaattgaaaa ccgaa