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LOCUS XM_017137568 1783 bp mRNA linear INV 09-DEC-2024 l(1)G0007 (Prp16), transcript variant X2, mRNA. ACCESSION XM_017137568 VERSION XM_017137568.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137568.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1783 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1783 /gene="Prp16" /note="ATP-dependent RNA helicase l(1)G0007; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054550" CDS 68..1672 /gene="Prp16" /codon_start=1 /product="pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X2" /protein_id="XP_016993057.1" /db_xref="GeneID:108054550" /translation="MDSTKFATFFGNVPTFTIPGRTFPVDVMFSKNTCEDYVESAVKQ ALQVHLTPNEGDMLIFMPGQEDIEVTCEVLEERLAEIENAPLLSILPIYSQLPSDLQA KIFQKSGDGVRKCVVATNIAETSLTVDGIIYVIDSGYCKLKVYNPRIGMDALQIYPIS QANANQRSGRAGRTGPGQAFRLYTQRQYKDELLALTVPEIQRTNLANTVLLLKSLGVV DLLQFHFMDPPPQDNILNSLYQLWILGALDHTGALTTLGRQMAEFPLDPPQCQMLIVA CRIGCSAEVLIIVSMLSVPSIFYRPKGREEEADGVREKFQVPESDHLTYLNVYQQWRQ NNYSSSWCNEHFIHIKAMRKVREVRQQLKDIMTQQNLSVKSCGTDWDIVRKCICSAYF YQAARLKGIGEYVNLRTGMPCHLHPTSALYGLGTTPDYVVYHELIMTAKEYMQCATAV DGYWLAELGPMFFSVKESGRSGREKKKQAAEHLKEMEEQMLKAQHEMEERKQQAAERE EQLAAKQEIATPGNATPRRTPARMGL" misc_feature 68..>1447 /gene="Prp16" /note="HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]; Region: HrpA; COG1643" /db_xref="CDD:441249" misc_feature 1487..>1615 /gene="Prp16" /note="Ezrin/radixin/moesin, alpha-helical domain; Region: ERM_helical; pfam20492" /db_xref="CDD:466641" polyA_site 1783 /gene="Prp16" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aatacgtcac acaaaccaga ttgtggcccg gcgacatgac ctcaagctga tcgtgacctc 61 cgccacgatg gactcgacca agtttgcgac cttcttcggc aacgtgccca cgttcaccat 121 tccggggcgg acctttcccg tcgacgtgat gttcagcaag aacacctgcg aggattacgt 181 ggagtcggcg gtgaagcagg cgctgcaggt ccacctgacg cccaacgagg gcgacatgct 241 catcttcatg cccggccagg aggacatcga ggtgacgtgc gaggtgctcg aggagcggct 301 ggcggagatc gagaatgcgc ccctgctgag catcctgccc atctactcgc agctgccctc 361 ggatctgcag gcgaagatct tccagaagtc cggcgacggg gtgcgcaagt gcgtggtggc 421 cacgaatata gcggaaacct cgctgaccgt cgacgggatc atctatgtaa tcgattccgg 481 ctactgcaag ctgaaggtct acaatccgcg catcggcatg gacgccctgc agatctatcc 541 catctcgcag gcgaacgcca atcagcggag cggtcgagcc ggacgcactg gacccggcca 601 ggcattccgc ctgtacaccc agcggcagta caaggacgag ctgctggccc tcaccgtgcc 661 cgaaattcag cgcaccaatc tggccaacac ggtgctgctg ctcaagtcac tcggcgtcgt 721 cgatctgctg cagttccact tcatggaccc accgccgcag gataacatcc tcaactcgct 781 gtaccagctg tggatcctgg gcgccctcga tcacaccggc gccctcacca cgctgggccg 841 ccagatggcc gagttcccgc tcgatccgcc gcagtgccag atgctcatcg tcgcctgtcg 901 catcggctgc agcgccgagg tgctgatcat agtgtccatg ctgtcggtgc cctcgatttt 961 ctaccgcccc aagggacgcg aggaggaggc ggatggcgtg cgcgagaagt tccaggtgcc 1021 cgagtcggat cacctgacct acctgaatgt ctaccagcag tggcgccaga acaactacag 1081 ttcgtcgtgg tgcaacgagc acttcatcca catcaaggcg atgcgcaagg tgcgcgaggt 1141 gcggcagcag ctgaaggaca tcatgacgca gcagaatctg agcgtcaaga gctgcggcac 1201 cgactgggac attgtgcgca agtgcatctg ctcggcgtac ttctaccagg cggcgcgact 1261 gaagggcatc ggggagtatg tgaatctgcg cacgggaatg ccctgccacc tgcatcccac 1321 gtctgctttg tacggactgg gaaccactcc cgactacgtg gtctaccacg agctgatcat 1381 gaccgccaag gagtacatgc agtgcgccac cgccgtcgat ggctattggc tggccgaact 1441 gggacccatg ttcttctccg ttaaggaatc tggacgcagc gggcgcgaga agaagaaaca 1501 ggccgccgag catctgaagg agatggagga gcagatgctg aaggcccagc atgagatgga 1561 ggagcgcaag cagcaggcgg ccgagcgaga ggagcagctg gccgccaagc aggagatcgc 1621 cacgccgggc aatgccacgc cccgccgcac gccggccagg atgggccttt aaatctacat 1681 tatattttaa attcaacaag tttttgctat attttttttg tgttttgcta taccctttgt 1741 ataatctacg tatgctaata aagaatcatt gtaaactgga gaa