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LOCUS XM_017137567 3843 bp mRNA linear INV 09-DEC-2024 l(1)G0007 (Prp16), transcript variant X1, mRNA. ACCESSION XM_017137567 VERSION XM_017137567.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137567.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3843 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3843 /gene="Prp16" /note="ATP-dependent RNA helicase l(1)G0007; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108054550" CDS 103..3732 /gene="Prp16" /codon_start=1 /product="pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1" /protein_id="XP_016993056.2" /db_xref="GeneID:108054550" /translation="MPSDDEEAGVHRLEGTVGQEARGGLVIRKPKDADHKTRSTGGFK VPQGSLLGLDKLAAKRRAEKERSERLISFQDSEYDDGGGGGGSTPQGSGGSSTSEFAF KKPDTKSFEKLRGQLREHKDETPSHTGGVSEKARERLREHIRRDRDRGRPVAASSSSS EGRERDRDRDRRERDRRRQRDRGRDRDRDRDRDRRSSRSSRDRSMSERSVHTPREPGT PGGSSSGGVSNSSWDEEEEGGHRKSSSSSDWDMPTPRSRHGSQSRDWSARPTPAHRYN QWAHDRKRSGATPWGEDPESLDLWEEEQRRLDREWYNIDEGYDDENNPFGGGANSEYF RKREEQLEQKRTKRISAQQRQNNRDNELWERNRMLTSGVVTSISVNDDFDEEALERVH LLVHHIIPPFLDGRIVFTKQPEPVVPVKDPTSDMALLARKGSALVRTYREQKERRKAQ KKHWELGGTKLGNIMGVQRPQDDEDARFDKDNDTADYRKDQKFADHMRDQETGGTSDF SRKKTIAEQRRFLPVFASRQELLNVIRENSVIIIVGETGSGKTTQLTQYLHEDGYSRR GMIGCTQPRRVAAMSVAKRVSDEMDTQLGEDVGYAIRFEDCTSERTVIKYMTDGILLR ESLRDPELDSYSAIIMDEAHERSLSTDVLFGLLREIVARRHDLKLIVTSATMDSTKFA TFFGNVPTFTIPGRTFPVDVMFSKNTCEDYVESAVKQALQVHLTPNEGDMLIFMPGQE DIEVTCEVLEERLAEIENAPLLSILPIYSQLPSDLQAKIFQKSGDGVRKCVVATNIAE TSLTVDGIIYVIDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAFR LYTQRQYKDELLALTVPEIQRTNLANTVLLLKSLGVVDLLQFHFMDPPPQDNILNSLY QLWILGALDHTGALTTLGRQMAEFPLDPPQCQMLIVACRIGCSAEVLIIVSMLSVPSI FYRPKGREEEADGVREKFQVPESDHLTYLNVYQQWRQNNYSSSWCNEHFIHIKAMRKV REVRQQLKDIMTQQNLSVKSCGTDWDIVRKCICSAYFYQAARLKGIGEYVNLRTGMPC HLHPTSALYGLGTTPDYVVYHELIMTAKEYMQCATAVDGYWLAELGPMFFSVKESGRS GREKKKQAAEHLKEMEEQMLKAQHEMEERKQQAAEREEQLAAKQEIATPGNATPRRTP ARMGL" misc_feature 1663..>3507 /gene="Prp16" /note="HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]; Region: HrpA; COG1643" /db_xref="CDD:441249" polyA_site 3843 /gene="Prp16" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aacgcgagtg aattgagtgg tcttcttatt ttagggaaac gaggaaaact ttgcaaataa 61 atccagctaa gagcaattgg aggagaaaac ccactagcaa ggatgccctc cgacgacgag 121 gaggccggcg tccaccggct ggagggcacc gtgggccagg aggcgcgcgg cggcctggtg 181 atccggaagc cgaaggacgc ggaccacaaa accaggtcaa ctggtggctt caaggtgccg 241 cagggatcgc tgctgggcct ggacaagctg gcggccaagc ggcgcgcgga gaaggagcgc 301 tcggagcggc tgatttcgtt ccaggacagc gagtatgatg atggaggagg aggaggaggc 361 tccactcccc agggatcagg aggctcctcc accagcgagt ttgccttcaa gaagccggac 421 accaagagct tcgagaagct gcgcggccag ctgcgcgagc acaaggacga gacgccctcg 481 cacacgggcg gcgtttcgga gaaggccagg gaacgcttga gggagcacat ccggcgggac 541 agggatcgcg gtcgcccagt ggcggccagc agctcctcct cggagggcag agagcgggac 601 agggatcggg acaggcggga gcgggacagg cggcgccagc gggacagagg aagagatcga 661 gatcgagatc gggatagaga tcgccggagc agccgtagca gccgggatcg ctccatgtcc 721 gagcgcagcg tgcacacgcc acgggaaccg ggcactccag gcggcagcag cagcggcggc 781 gtctcgaaca gctcctggga cgaggaggag gagggaggcc accggaagag ctcctcctcc 841 tccgactggg acatgcccac gccgagatcg cgtcatggca gccagtcgcg cgactggtcg 901 gcgcgtccca cgccggcgca tcgctacaat cagtgggccc acgaccgcaa gcgcagcgga 961 gcgacgccgt ggggcgagga tcccgaatcg ctggaccttt gggaggagga gcagcggcgc 1021 ctggatcgcg agtggtacaa catagacgag ggctacgacg acgagaacaa tccctttggc 1081 ggcggggcca attccgagta tttccgcaag cgcgaggagc agctggagca gaagcgaacc 1141 aagagaatca gcgcccaaca gcggcagaat aatcgggaca acgagctgtg ggagcgcaac 1201 aggatgctca cctcgggcgt ggtcacctcg atcagcgtga acgacgattt cgatgaggag 1261 gcgctggagc gagtgcatct gctggtgcac cacatcatac ctccgtttct cgacgggcgg 1321 attgtcttta ccaagcagcc ggagcctgtg gtgcccgtca aggatcccac ttcggatatg 1381 gcgctgctgg cgcggaaggg cagcgccttg gtgcgcactt atcgcgagca aaaggagcgc 1441 aggaaggcgc agaagaaaca ctgggagctg ggcggcacca agctgggcaa catcatgggc 1501 gtccagcggc cgcaggacga cgaggacgcg cgcttcgaca aggacaacga cacggccgac 1561 tatcgcaagg accagaagtt cgccgaccat atgcgcgacc aggagacggg cggcaccagc 1621 gacttctcgc gcaagaagac catcgccgag cagcgccgct tcctgcccgt gttcgcctcg 1681 cgccaggagc tgctcaacgt catccgcgag aactcggtca tcatcattgt cggcgagacg 1741 ggcagcggca agacgacgca gctgacgcag tacctccacg aggacggcta cagccggcgc 1801 ggcatgatcg gctgcacgca gccgcgtcgc gtggccgcca tgtcggtggc caagcgcgtc 1861 tccgacgaga tggacaccca gctgggcgag gacgtgggct atgccattcg attcgaggac 1921 tgcacctcgg agcgcacggt catcaagtac atgactgacg gtatcctttt gagggagagt 1981 ctgcgcgatc cggaattgga cagctactcg gcgatcataa tggacgaggc ccacgagaga 2041 tccctctcca cggacgtgct tttcggactg ctgcgagaga ttgtggcccg gcgacatgac 2101 ctcaagctga tcgtgacctc cgccacgatg gactcgacca agtttgcgac cttcttcggc 2161 aacgtgccca cgttcaccat tccggggcgg acctttcccg tcgacgtgat gttcagcaag 2221 aacacctgcg aggattacgt ggagtcggcg gtgaagcagg cgctgcaggt ccacctgacg 2281 cccaacgagg gcgacatgct catcttcatg cccggccagg aggacatcga ggtgacgtgc 2341 gaggtgctcg aggagcggct ggcggagatc gagaatgcgc ccctgctgag catcctgccc 2401 atctactcgc agctgccctc ggatctgcag gcgaagatct tccagaagtc cggcgacggg 2461 gtgcgcaagt gcgtggtggc cacgaatata gcggaaacct cgctgaccgt cgacgggatc 2521 atctatgtaa tcgattccgg ctactgcaag ctgaaggtct acaatccgcg catcggcatg 2581 gacgccctgc agatctatcc catctcgcag gcgaacgcca atcagcggag cggtcgagcc 2641 ggacgcactg gacccggcca ggcattccgc ctgtacaccc agcggcagta caaggacgag 2701 ctgctggccc tcaccgtgcc cgaaattcag cgcaccaatc tggccaacac ggtgctgctg 2761 ctcaagtcac tcggcgtcgt cgatctgctg cagttccact tcatggaccc accgccgcag 2821 gataacatcc tcaactcgct gtaccagctg tggatcctgg gcgccctcga tcacaccggc 2881 gccctcacca cgctgggccg ccagatggcc gagttcccgc tcgatccgcc gcagtgccag 2941 atgctcatcg tcgcctgtcg catcggctgc agcgccgagg tgctgatcat agtgtccatg 3001 ctgtcggtgc cctcgatttt ctaccgcccc aagggacgcg aggaggaggc ggatggcgtg 3061 cgcgagaagt tccaggtgcc cgagtcggat cacctgacct acctgaatgt ctaccagcag 3121 tggcgccaga acaactacag ttcgtcgtgg tgcaacgagc acttcatcca catcaaggcg 3181 atgcgcaagg tgcgcgaggt gcggcagcag ctgaaggaca tcatgacgca gcagaatctg 3241 agcgtcaaga gctgcggcac cgactgggac attgtgcgca agtgcatctg ctcggcgtac 3301 ttctaccagg cggcgcgact gaagggcatc ggggagtatg tgaatctgcg cacgggaatg 3361 ccctgccacc tgcatcccac gtctgctttg tacggactgg gaaccactcc cgactacgtg 3421 gtctaccacg agctgatcat gaccgccaag gagtacatgc agtgcgccac cgccgtcgat 3481 ggctattggc tggccgaact gggacccatg ttcttctccg ttaaggaatc tggacgcagc 3541 gggcgcgaga agaagaaaca ggccgccgag catctgaagg agatggagga gcagatgctg 3601 aaggcccagc atgagatgga ggagcgcaag cagcaggcgg ccgagcgaga ggagcagctg 3661 gccgccaagc aggagatcgc cacgccgggc aatgccacgc cccgccgcac gccggccagg 3721 atgggccttt aaatctacat tatattttaa attcaacaag tttttgctat attttttttg 3781 tgttttgcta taccctttgt ataatctacg tatgctaata aagaatcatt gtaaactgga 3841 gaa