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LOCUS XM_017137402 1395 bp mRNA linear INV 09-DEC-2024 rhino-like (LOC108054437), mRNA. ACCESSION XM_017137402 VERSION XM_017137402.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137402.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1395 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1395 /gene="LOC108054437" /note="chromo domain-containing protein rhino-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108054437" CDS 117..1061 /gene="LOC108054437" /codon_start=1 /product="chromo domain-containing protein rhino-like" /protein_id="XP_016992891.2" /db_xref="GeneID:108054437" /translation="MSKTSLKGVSAAEHEPIDDQDVEYEVEKLLAHSYLRGRKQFLVK WKGYPMDQSTWEPMEELDNCIASLMDYEEEDFIKIMKNTNKKRAKIRQKEELVPTYVM MNNKEYSPVYAEQEEFLGFDKESSSSSSQVKQEQVHLSDDESVGESISSVAHSEEDSQ EASSIQAICNSKTSQEQEFLEEASLGFEETTASGTTTEEEKKESNSWLTVAQIQTQLR LDELLADLERTIRQEGLHLNVKKKKRGWKMPETSKTYGIGRCLQLEKIHNCFKVREQL FFCVTWKGCGTMDAVPLRCIKYLYPELIIQFLETLQKV" misc_feature 183..332 /gene="LOC108054437" /note="CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains; Region: CD_CSD; cl28914" /db_xref="CDD:475127" misc_feature order(186..200,243..245,249..260,270..272,276..287, 291..296,315..317,324..329) /gene="LOC108054437" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:349274" misc_feature 897..1046 /gene="LOC108054437" /note="chromo shadow domain; Region: CSD; cd00034" /db_xref="CDD:349275" misc_feature order(909..911,915..929,951..953,978..980,1038..1040) /gene="LOC108054437" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:349275" misc_feature order(927..929,942..944,993..998,1017..1022,1026..1031, 1038..1043) /gene="LOC108054437" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:349275" polyA_site 1395 /gene="LOC108054437" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cagcccgcat cctgagcttg acgccgtttt tacctttgtt tttttaccgc gtgacgccat 61 gcgtctctaa tttttctcta attttttatg tgctacgtct aaaaaaaact atagttatgt 121 ctaaaacctc attgaagggt gtctccgcag ccgagcacga gcccatcgat gatcaggatg 181 tcgagtacga ggtggagaag ctcttggccc acagctactt gcgcggtcgc aagcaatttc 241 tggtgaaatg gaagggatat cccatggatc agtccacctg ggagcccatg gaggagttgg 301 acaactgcat tgcctcgctg atggactacg aagaggagga cttcattaag atcatgaaaa 361 acaccaataa gaagcgggcg aagatcaggc agaaagagga gttggtgcct acctatgtta 421 tgatgaataa taaggagtat tcaccggtct acgctgagca ggaagagttc ctgggctttg 481 acaaggagtc ttcctcctcc tcctcccaag tgaagcagga gcaggtgcat ctaagtgatg 541 acgaatcagt gggtgagtcc attagctcgg tggcccactc ggaagaagat tcacaggagg 601 catcatcaat ccaagctatt tgtaatagta aaacgtccca ggagcaggag tttctagagg 661 aagcttcatt gggttttgaa gaaaccactg catctggaac aaccaccgag gaggagaaga 721 aggaatccaa ttcttggcta accgtagccc agatacaaac tcagctaagg ctagacgagc 781 tgctcgccga cttggagcgc accatccgtc aggagggact tcacctgaac gtgaaaaaga 841 agaaacgcgg ctggaagatg ccggagacct cgaaaaccta cggcatagga cgctgtctgc 901 agctggagaa gattcacaac tgcttcaagg tgcgcgagca gctctttttc tgcgtcacct 961 ggaagggatg tggcaccatg gacgcagtgc ctctgcggtg catcaagtac ttgtaccccg 1021 agctcatcat ccagttcctt gagacgttgc agaaagttta gattccaaaa atcggatact 1081 aggattagga aacgctagtt gtctatatta tgtatttttt gaaccaacat ttgacaacga 1141 tttctgtcgc gattttttgt ttgttattgc caatgttatg tattttttta atcacaattt 1201 tattgttaat aacgacttct attacggaga aacgtaataa gaaggtaata tgtagtcttt 1261 gagtttaaaa tgttaaatgg aagctgaaac tcccgcattt ataatttaat aataatatgt 1321 ttatatgtgt taaattaaaa aatgttaatt aaggattgtt taagttttat tttattaaaa 1381 taccttgcta cagaa