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LOCUS XM_017137392 3238 bp mRNA linear INV 09-DEC-2024 and cysteine-rich domain-containing protein rubicon (Rubicon), mRNA. ACCESSION XM_017137392 VERSION XM_017137392.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137392.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3238 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3238 /gene="Rubicon" /note="run domain Beclin-1-interacting and cysteine-rich domain-containing protein rubicon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108054427" CDS 115..2514 /gene="Rubicon" /codon_start=1 /product="run domain Beclin-1-interacting and cysteine-rich domain-containing protein" /protein_id="XP_016992881.2" /db_xref="GeneID:108054427" /translation="MATPPPPPFPDVDAAVEVDATAGDATAEQPQPNPQQQKQKEKQQ SQVARNSLLADLRRSTNFWFRAKSTDGLQLLAQSCTRILQHGLLQPVELRRLADDFEF LLASAGNRPPDCPRGGVSASGVEEFLSEWTKRCLRARCLSQCLQSLVADPELMELYYP SEEAFLRRSSDATALFVCLTAVQLNQSGLLGQLEVRHQLRHRRTCSQPNFSVSPRLQV VPEEEQLQRRSFLRRLKSLPNLGQAVEELEERGASSRRRCQTFSSSRSPKIREDSSCS SPARRIQLINCDDIKIWTDQTTQAAPVEKQEALEAPKTASSVGSYLGSLFSSPPLYTN WFQRGVGEDLNASGDGGMLDTFLPVNGRKLKKQQTLFEGVSMLDEAAATSAAPSSPWD IQGCSSTTSTSSSVSLTPGSADKMDQQSLASFLQMSRQTHNNTQLEKENAHFRISEAC ITAIEHVKWSMSANPGVRMNPSEPNLMPYVEQIPGAIQNHSAEAVGLQLISRFSDQQL PRLGHLKWLVSEQEAPQQLLPLPLPKEEQASLTRGTSSWAPPRQQIIFTEHPAENRGK LLEKQNHRCAGCGMRVAKHLQQHFRYCSYLGKYLCTGCHRNQISAIPARILRSWDFRC YPVCSFAYRLIEQMYAFPLFHVPDLNAQLYRHKELAKARRKRLQLRAVKGFIANCRFA TREQAFFTAIPAHITQDPDMWSMCDFVDVQNTSMNRSIKEVIALSEQHVHNCVLCTGR AFLCEHCKGGELIYPWQRKVQRCERCGACFHNACWKISSRSRSLVDPCPRCSRLQNRA S" misc_feature 268..705 /gene="Rubicon" /note="RUN domain found in Run domain Beclin-1-interacting and cysteine-rich domain-containing protein (RUBCN) and similar proteins; Region: RUN_RUBCN; cd17686" /db_xref="CDD:439048" misc_feature 1885..2502 /gene="Rubicon" /note="Putative zinc-RING and/or ribbon; Region: zf-RING_9; pfam13901" /db_xref="CDD:464030" polyA_site 3238 /gene="Rubicon" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgccatcac taacaaaaat aatcaaaata aattaatttc aatttaattg caccgcgaat 61 atgcaaccgc tgcaccaccg ccccccgcct ccgcccctgt gacagtgtgc agcaatggcc 121 acgcccccgc cgcccccctt tccagatgtg gacgcagccg tggaagtgga cgcaacagca 181 ggcgacgcaa cagcggagca gccgcagccg aatccgcaac agcagaagca gaaggagaag 241 cagcaatcgc aggtggccag gaattcgctg ctcgcggatc tgcggagatc gacgaacttc 301 tggttccggg ccaaatcgac ggacggactg cagttgctgg cccaaagttg cacccggatt 361 ctgcaacatg gactgctgca gcccgtggaa ctgcgtcgac tggcggacga ctttgagttc 421 ctcttggcga gtgcgggaaa tcgccccccc gattgccccc gaggaggagt cagtgcatcc 481 ggagtggagg agttcctgtc cgagtggacc aagcgctgcc tgcgcgcccg ctgcctgtcg 541 cagtgcctcc agtcgctcgt cgccgatccg gagctcatgg agctctacta tcccagcgag 601 gaggccttcc tgcggcgctc ctcggatgcc accgccttgt tcgtctgcct cacggccgtc 661 cagctgaacc agagcggcct gctgggccag ctagaggtgc ggcatcagct gcgccatcga 721 cgcacctgct cgcagcccaa cttcagcgtt tcgccgaggt tgcaggtggt tccagaggag 781 gagcaactgc agcggcgcag cttcctgcgg cgtttgaaga gcctgcctaa tctcggccag 841 gcggtggagg agctggaaga gaggggagcc tcctccaggc ggcgctgcca aacgttcagc 901 agctccagga gtccgaaaat cagggaggat agctcctgct ccagtccagc taggcgcatc 961 cagctgatca actgcgatga catcaagatc tggacggatc aaacaactca agctgcgcca 1021 gtggagaagc aggaggcatt agaagcaccc aaaactgcct cctcggtggg cagctatctg 1081 ggcagcctct tcagctcgcc tcccctctac accaattggt ttcagcgcgg cgtgggcgag 1141 gatttgaatg cctccggcga cggcggcatg ctggacacct tcctccccgt caacggacgc 1201 aagctgaaga agcagcagac gctcttcgag ggcgtcagca tgctggacga agcggcggct 1261 acgtcggcgg ctccctcgtc gccctgggac attcagggct gctcctccac cacctccacc 1321 tccagttcgg tgagcctcac gccgggcagc gcggacaaga tggaccagca gtcgctggcc 1381 tccttcctcc aaatgtcccg gcagacgcac aacaatacgc agctggagaa ggagaatgcc 1441 cactttcgga tctcggaggc ctgcatcacg gccatcgagc atgtcaagtg gagcatgtct 1501 gctaatccag gggtccgaat gaatccctcg gaaccgaatt taatgcccta tgtggagcag 1561 ataccaggtg ctatccaaaa tcacagtgcc gaagcggtgg gcctgcaact aatcagccgc 1621 tttagcgacc aacagctgcc gcgtttgggc cacctcaagt ggttggtttc ggagcaggag 1681 gcaccgcagc aactgctgcc gctgcccctg ccaaaggagg agcaggctag cctcaccaga 1741 ggcacctcca gctgggcgcc gccgcgccag cagatcatct tcaccgaaca tcccgccgag 1801 aatcgcggca agctgctcga gaaacaaaac caccgctgtg ccggctgcgg aatgcgggtg 1861 gcgaagcatc tgcagcagca ctttcgctac tgcagctacc tggggaaata tctgtgcacc 1921 gggtgccatc gcaaccagat ctcggcgata cccgcccgca tcctgcgctc ctgggacttt 1981 cgctgctatc cggtgtgctc cttcgcctac cgcctcatcg agcagatgta cgcctttccg 2041 ctcttccacg tccccgatct gaatgcccag ctctacaggc acaaggagct ggccaaggcg 2101 cgcaggaagc gactgcagct tagggcggtc aagggattca tagccaattg tcggtttgca 2161 acgagggagc aggccttctt cacggccatt ccggcgcaca tcacccagga tccggacatg 2221 tggtccatgt gcgacttcgt ggacgtgcag aacaccagca tgaatcgctc tatcaaggag 2281 gtgattgctc tcagcgagca gcatgtccac aactgcgtgc tttgcacggg tcgtgccttc 2341 ctctgcgagc actgcaaggg cggcgaactg atttacccgt ggcagcggaa ggtgcagcga 2401 tgcgagagat gcggcgcctg cttccacaac gcctgctgga agatcagcag tcggagccgc 2461 agcctcgtcg acccctgtcc ccggtgctcc cgtctccaga atcgagccag ctagcatccg 2521 gtcaacgtgg agttgggaaa acaacccaaa aatcgaaggg gtggttagaa agtgaagcca 2581 atattcgact tggaaactat gggattaaaa acaattttgg tattagggtt agaatataat 2641 cctctcggaa gttgtatagt aatatttaca tttttttttt ttgcatcact gatggtattg 2701 tttttaatta gttatgctag atttgttaat ggatttaaga ataggcaata tgagtctcaa 2761 attcacattc tttgggccaa aaagtcctat aaatcttatt tttattttat ttgatatttt 2821 tgtcttgcat tctttaagaa atttttggtt gaaaatatct gtaagaatgt ttgaaaattc 2881 cgagtttctc tttaaaatga attgaaattc atattatctg tttaggcctt taaaaccttt 2941 cttaatcccc agtaataaat taacaaagaa aaaaggtaaa gaagcccaaa acagatattt 3001 tgcctatagt ttccaagatc gaattatata gtgattaaat acatttgcat aataactaca 3061 attatttaaa caaatactgt acataaccgt gtaaactacc aaaactgtta cgagaatcgt 3121 ttacctcaag cgaaagataa gaacccatgt tgattttata catatataac aactacgata 3181 tgaatattta ttgcatactt ttattgtatg attaaaaact ttattttctt aaccgtca