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LOCUS XM_017137388 3666 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017137388 VERSION XM_017137388.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137388.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3666 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3666 /gene="dx" /note="deltex E3 ubiquitin ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108054425" CDS 377..2494 /gene="dx" /codon_start=1 /product="protein deltex" /protein_id="XP_016992877.2" /db_xref="GeneID:108054425" /translation="MEASMTNSSGGGGGGGGGSGSSGPPVNHAHAVCVWEFETRGGKW LPYSPAVSQHLERAHAKKLTRVMLSDADPSLEQYHVNVRTMTQESEADVGTSGLLTIG VRRMFYAPSSPAGKGTKWEWSGGSADCNNDWRPYNMHVQCIIEDAWARGEQTLDLCNT HIGLPYTINFCNLTQLRQPSGPMRSIRRTQQAPYPLVKLTPQQANQLKSTNAASSSSQ YNTLPKLPMTRQQHPLPTSHQVQQQQQQQQQQHHHQQQQQQHHHQQQQQQHQMQHHQA PRKPPKKHSEISTTNLRQILNNLNIFSSSSTKQTAASASSSSSSASLHHGNHANHLSH AHFSHAKNMLTASMNSHHSRCSEGSLQSQRSSRMGSHRSRSRTRTSDTDTNSVKSHRR RPSVDTVSTYLSHESKESLRSRNFAISVNDLLDCSLGSDEVFVPSLPPSSLGERAPVP PPLPLHPRQQQQQQQMQQQQQQQQAQQQQQSAIAGSIVGVDPASDMISRFVKVVEPPL WPNAQPCPMCMEELVHSAQNPAISLSRCQHLMHLQCLNGMIIAQQNEMNKNLFIECPV CGIVYGEKVGNQPIGSMSWSIISKNLPGHEGQNTIQIVYDIASGLQTEEHPHPGRAFF AVGFPRICYLPDCPLGRKVLRFLKIAFDRRLLFSIGRSVTTGREDVVIWNSVDHKTQF NMFPDPTYLQRTMQQLVHLGVTD" misc_feature 473..715 /gene="dx" /note="Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis; Region: WWE; smart00678" /db_xref="CDD:128922" misc_feature 734..964 /gene="dx" /note="Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis; Region: WWE; smart00678" /db_xref="CDD:128922" misc_feature 1916..2080 /gene="dx" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(1919..1921,1928..1930,1982..1984,1988..1990, 1997..1999,2006..2008,2066..2068,2075..2077) /gene="dx" /note="cross-brace motif; other site" /db_xref="CDD:438111" misc_feature 2102..2482 /gene="dx" /note="Domain found at the C-terminus of deltex-like; Region: Deltex_C; cd09633" /db_xref="CDD:193607" misc_feature order(2126..2140,2144..2146,2180..2182,2186..2188, 2192..2200,2261..2269,2273..2275,2375..2377,2414..2419) /gene="dx" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193607" polyA_site 3666 /gene="dx" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttagccattt tccgctgttg tctctctcca actggctgcc caaaaaaaaa taaattactc 61 gcctgcgctt gcgctaaatg ctaaaaaaac cgttttaacc gttaaacgcg agttcttcag 121 ccgcaccgaa ctagcggcga tcgagtggaa aagcgaaaag aaaactgcgg gaaaatgaaa 181 gccgtggaaa atcgaggcta acaaacgcag gcagccacca tttttaattt ctttgtttat 241 tttgtgccca tcttcgcgtg cgagcgagac agcgagcggc ggcggctgcg aaagagagtg 301 ggagagggag aggcggagga gcaggagttt ccaatggaaa tgggatcgtt tcagggataa 361 gcgacatatt ccagcgatgg aagcctccat gaccaactcc tccggcggag gaggaggagg 421 gggaggagga tctggatcga gcggcccacc ggtgaaccac gcccacgccg tctgcgtctg 481 ggagttcgag acgcgcggcg gcaagtggct gccctattcc ccggctgtct cgcagcattt 541 ggagcgggcg cacgccaaga agctcacccg cgtcatgctc agcgatgccg atcccagcct 601 ggagcagtac cacgtcaatg tgcgcaccat gacccaggaa tcggaggcgg atgtcggtac 661 gtctggactc ctaaccatcg gcgtccggcg gatgttctac gcccccagct cgccggcggg 721 caagggcacc aagtgggagt ggtccggcgg gagtgccgat tgcaacaacg actggcgacc 781 ctacaacatg cacgtccagt gcatcatcga ggacgcctgg gcgaggggcg aacaaacctt 841 ggacttgtgc aacacccaca tcggcctgcc ctacaccatc aacttttgca atctcaccca 901 gctgcgccag cccagcggac cgatgcgcag catccggcga acccagcagg cgccgtatcc 961 cctggtgaag ctaacgccgc agcaggccaa ccaactcaag tcgactaacg ccgccagcag 1021 cagcagtcag tacaacacgc tgcccaaact gcccatgacc aggcagcagc atccactgcc 1081 caccagccat caagtgcagc agcagcagca gcagcagcag cagcaacatc atcaccagca 1141 gcagcagcag caacatcatc accagcagca gcagcagcaa catcagatgc agcatcatca 1201 ggcgccgcgg aagccgccga agaagcacag cgagatctcc acgacgaatc tgcgtcagat 1261 actcaacaac ctgaacatct tcagcagcag cagcaccaag cagacggcgg ccagtgccag 1321 ttcgtcctcc tcgtcggcct ccctgcatca tggcaatcat gcgaatcacc tgtcgcatgc 1381 ccacttctcg cacgccaaga acatgctgac cgcctcgatg aacagccatc acagtcgctg 1441 ctcggaggga tcgctgcagt cgcagaggag cagccgaatg ggctcgcatc gctcgagatc 1501 gcggacgcga acgtcggata cggatacgaa tagcgtgaaa tcgcatcgca ggagacccag 1561 cgtggacacg gtgtccactt acctcagtca cgagagcaag gagagtctgc gcagcaggaa 1621 tttcgccatt tccgtgaacg atctgctcga ctgttcgctg ggcagcgatg aggtatttgt 1681 gccctcgctg ccgccatcgt cgctgggtga aagggcgccg gtgccgccgc cattgccact 1741 gcatccgcga cagcagcagc aacagcagca gatgcaacag cagcaacagc aacagcaggc 1801 gcagcagcaa cagcaatcag caatcgccgg ttcgattgtg ggcgtggacc cggccagcga 1861 tatgatatcg cgatttgtca aggtggtgga gcctccgctg tggcccaatg cccagccgtg 1921 tcccatgtgc atggaggagc tggtgcactc cgcccagaat ccggccatct cgctgagtcg 1981 ctgccagcac cttatgcatt tgcagtgttt aaatgggatg ataattgccc agcagaacga 2041 aatgaacaag aacctcttca tcgagtgccc cgtgtgcgga atcgtttacg gcgagaaggt 2101 gggcaatcag cccataggca gcatgtcctg gagcatcata agcaagaatc tgccgggaca 2161 cgagggccag aacaccatac agattgtcta cgacattgca tcgggcctgc agacggaaga 2221 gcatccgcat cccggtcgag ccttctttgc ggtgggattc ccgcggatct gctacctgcc 2281 ggactgcccg ctggggcgaa aggtgctgcg cttcctcaag atcgccttcg atcgccggct 2341 gttgttctcg atcggacgat cggtgaccac cggacgcgag gatgtggtca tctggaatag 2401 tgtggatcac aagacgcagt ttaatatgtt ccccgatccc acctatctgc agcgaactat 2461 gcaacagctg gtgcatctgg gcgtcacgga ttaggagatt aagcaaccta ccaaccaatc 2521 aaccacccat ttacccaccg aagtccctgg aaaaaaattc attcttctct tccattcgta 2581 tattaagtta cttcctacat aatctcagtg tgtgtgcaat catcatcctc gtttactatg 2641 atatattttt tttcatagat atattgtaat agcgtgttca agctgctcga accctaaaaa 2701 caacagcaaa ccacaattgc aattgtagct tcctttccgc tcttccaatt cgtatttgta 2761 cgcacttaga ctagttaaca ttaagacaaa gtacatcata tgtattagct agttagttag 2821 ctgtagtagt ttttagcttc caagagaatc ttgacccaag acacctacta gtattaggca 2881 ttaatcctga ttcctgattc atcattcgat tcaagccatc cctaaaaaca ttcgagtgta 2941 agctgtgcca aaatcgtagc gctcttcatt aggagaaata tgtatattgt tgattataga 3001 tagcatatag ataccatcgc ccatctctct cggtttcgaa tttgtccctt ctgctttttt 3061 ttttgttagt aataacatcc gttaggatct tcgagagaaa tggagatggg ctcattcgat 3121 tagatagact tgtctcactc gtcttggcca tttaatctct tccattcagc gaatttgatg 3181 tgattttaat ttgaattatt cattattaaa ctgagcctgc tatataggga gcatacataa 3241 ttgtaaatca gccagatatt ccattataca tacatatata ttacatttat cataccgcat 3301 accacatacc ataatttttt ttaattgaat cttttgcaca catttgatga attgttgctt 3361 tcatattgat atcatcgaac atcgaactat atcgtataca tcgccaatat atagcatata 3421 tatatatagc atatagtatg tagagagatt gtacggacag ctagcggata tattatgtat 3481 ttggtccgcg tcaccatatt tgatatgata tgattttact aagttgtatt tagcactgat 3541 tagttcttag tgttcactgc gaatattcca caacaaattc cacaccatta atatatgcat 3601 attacatata tacatacagt acatttatac atagttcaaa taaagtaact tcattcatgt 3661 tcaaaa