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LOCUS XM_017137383 3520 bp mRNA linear INV 09-DEC-2024 tail-1 (Pat1), mRNA. ACCESSION XM_017137383 VERSION XM_017137383.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137383.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3520 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3520 /gene="Pat1" /note="Protein interacting with APP tail-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054422" CDS 287..2377 /gene="Pat1" /codon_start=1 /product="amyloid protein-binding protein 2" /protein_id="XP_016992872.2" /db_xref="GeneID:108054422" /translation="MAAEMLAALNPNPNPNSPKPLYDLSLQSLIGSMNTKVPALDRIS RLAELPRNLLIDVYEMMSQQESLKDTLLEELAQLEVFSRLVRYSAARSKLLRIMASLM ASKKMLARSLSENYMSRYGIPGYEEEEVKELQQMEPLSLNKNHQEDQEEDGYDGGETT EAAEASTSPPAPNYPRTQFSPIAKHEEPQGPLYGPSQGELSVISDLELEELPAEEMQA IDLGLRLGSFLSEAGWMQESITVLASLNGRLKHLPPHKHWLELRLDCLQRLLYAESAH CNFKLAQHTCDELMGLRSSLNNLVPAQLVAIAYTQISAMFFARNEYTSSHRWSGQAMQ FLRGSATPRITIDVLRQAAKACVVKRDFARANLLICQAVRRAREHFGVKHQKYGDALL DYGFFLLNVDSVFQSVNVYKEALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTGDF SCAQDHVDKAVNIMKNLVPSNHLMLASAKRVKALLLEEIALDKMADGMDEEDLLLQSE ELHNFALLLSLEVFGEENVQTAKHYGNLGRLYQTMNRFEEAERMHQKAIKIKTDLLGA FDYEVGLSIGHLASLYNYQMKKYREAEKLYLRSIDISLRLFGHSYSGLEYDYLGLCHV YETLHDFEKYLKYAHTLENWQMLRGQNLTQNKSSYPAIEVDYSIEEVKNKFFSMCVCK SSPTRSEPAEVNPN" misc_feature 1733..1972 /gene="Pat1" /note="Tetratricopeptide repeat; Region: TPR_12; pfam13424" /db_xref="CDD:315987" misc_feature 1868..2092 /gene="Pat1" /note="Tetratricopeptide repeat; Region: TPR_12; pfam13424" /db_xref="CDD:315987" misc_feature 1874..1960 /gene="Pat1" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(1877..1879,1886..1891,1898..1903,1907..1909, 1979..1981,2012..2017,2024..2029,2036..2041,2132..2134, 2141..2146,2153..2158,2165..2167) /gene="Pat1" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 1973..2092 /gene="Pat1" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" polyA_site 3520 /gene="Pat1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tagcgcggtc acactgacga aaataaagag gaaaaaaagt tccaacacaa tacaattcaa 61 ttcacaattc ccaattccca acgcataatc cgttggccaa gatttcgact ttagctgacg 121 ggccccgaca atttagatgt gttccaagtt gtagtgccac gcctcccgcg agtgtccccg 181 ccccccaaga aaggttagca gcagcagaag cagcagcagc gtttgaagga aacagcgagg 241 aaacaggcaa ggaaaaggaa aggaaaagcc agtgagcgag agcgagatgg ctgccgaaat 301 gctcgcggcc ctcaatccga acccaaatcc caactccccg aagcccctat acgatctatc 361 gctgcaatcg ctcatcggga gcatgaacac caaggttccg gcgctggaca ggatcagccg 421 cctggcggag ctgccgcgca acctgctcat cgatgtctac gaaatgatgt cgcagcagga 481 gtccttgaag gacacgctgc tggaggagct ggcccagctg gaggtgttct cccgtctcgt 541 ccgctactcg gctgcccgca gcaagttgct gcgcattatg gcctcgctaa tggccagcaa 601 aaagatgctg gccagaagtc tcagcgagaa ctatatgtcg cgctatggga ttccaggcta 661 cgaggaggag gaagtcaagg aactccagca gatggaaccg ttgagtttga acaagaatca 721 tcaagaagat caggaggagg atggatacga tggtggggaa acgacagagg cagcagaggc 781 cagcacaagt ccacccgctc caaattaccc ccgtacccaa ttcagcccaa tcgcaaagca 841 cgaagaaccc caaggcccat tatatggccc gtcgcagggc gaactcagtg tgattagcga 901 cttggagctc gaggagctgc ccgccgagga gatgcaggcc atcgacctgg gcctgcgcct 961 cggatcgttc ctttcggagg ccggttggat gcaggagagc ataaccgtgc tggccagcct 1021 caatggaaga ctgaagcacc tgccgcccca taaacactgg ctggagttgc gcctcgactg 1081 cctgcagcgc ctgctttacg ccgaatcggc ccattgcaac tttaagctgg cgcagcacac 1141 ctgcgacgaa ctgatgggtc tgagaagttc gcttaataac cttgtgcctg cccagctggt 1201 ggccatagcc tacacccaga tttcggccat gttctttgcc cgcaacgagt acaccagcag 1261 tcataggtgg agcggtcagg cgatgcaatt tctgcgtgga tcggcgacac cgcgcatcac 1321 catcgatgtt ctgcgccagg cggccaaggc ctgtgtcgtg aagagagact ttgcccgggc 1381 caatctgctc atctgccagg cggtgcgacg cgctcgtgaa catttcggag ttaagcatca 1441 gaagtacggc gatgccctgc tggactatgg cttcttcctg ctcaacgtgg actcggtgtt 1501 ccagtcggtc aatgtgtaca aggaagcgct ggccgtgcgc cgcggaatct ttggcaacat 1561 gaacttccat gtggccattg cccacgagga tttgtcctat gcctactatg tgcacgagta 1621 cagcaccggc gactttagct gtgcccagga tcatgtggac aaggcggtga acataatgaa 1681 gaatctggtg cccagcaatc atttgatgtt ggcctcggcg aagcgcgtga aggcgctgct 1741 gctggaggag attgcgctgg acaagatggc cgacgggatg gatgaggagg atctgctgct 1801 gcagtccgag gagctgcaca atttcgccct gctgctctcg ctcgaagttt tcggcgagga 1861 gaatgtgcag acggcgaagc actatggaaa tctggggcgt ctataccaaa cgatgaatcg 1921 cttcgaggag gcggaacgaa tgcaccagaa ggcgatcaag ataaagaccg atctgctggg 1981 tgccttcgac tacgaggtgg gcctgtccat tggccacttg gcctcgctgt acaactatca 2041 aatgaagaag taccgtgagg ccgagaagct ctacctgcgc agcattgata taagcctgcg 2101 tctgttcggt cactcgtact ctggcctgga gtatgattac ttgggcctgt gccacgttta 2161 cgaaacgctg cacgactttg agaagtattt gaagtatgcg cacacactgg agaactggca 2221 gatgctgcgt ggccagaacc taactcaaaa taagtccagc taccccgcca tcgaggtgga 2281 ctattccatc gaggaggtca agaacaagtt cttcagcatg tgcgtctgca aaagcagtcc 2341 aacccgttcg gaaccggcgg aggtgaatcc aaactgagat ggggttttgg gagtgggagc 2401 gcaagtggaa gtggaaatgg atatagtggc gagtgaggat gaggatacaa tcgcaatcgc 2461 acccacaccc cccgcatcgg atggcacaaa ctggagggca aactgcagca gcagcagcag 2521 cagaggcggc aacatctgca gtttgtctta gataagagag atattcgcat aagttagccc 2581 acgttgatta gacagaaaag aagagaaaag aaggagcatc gaaggatcga cccgcgtgtg 2641 ttctatatga atgtctaagt atagttaata gcatagatcg ggttttaaat gttttctctt 2701 tgctttccat ttctatttcc atcgaataac cccatatacc catactatat gggtcagttc 2761 agcaagttgt gttccagcca tcatcgaata cgtccagtac cccttagttc ccacagtttt 2821 cgaggaaacc acccagtagt cctgtttagt tttgccagtc agaagaagat gaacctctag 2881 gctataagat gtagtagtat tgttgcagct tcggcgggag atcgttgagc aaggattatt 2941 tttttatgta ttccccgcgt cttggcccat gtacaaatgt ttaagtttta atggattttc 3001 gcgtctaata attctacctt tgtatcgatc tttcttatat tttttgtaaa ctcgaagaaa 3061 aaaaggccag tagtcgcttc gcttttgttt cgctttctct ctaggtgtag tggaatgtac 3121 tcaattttta taatttcaat cacctactac tacgtactaa cgtcttgttg ttagtgcgct 3181 tgaagagcac agaagatgaa gaaggtgaag ttgttgtata gagagcgtat tgtatagtct 3241 agcctatagc ctatccgaaa acgatatact aaatatatat atatatattt ctaatgctgc 3301 gtacgcatgg aacgtggata caaaaaagta ttgccgcgca gccccccaaa ctaaagttaa 3361 acaaaaagca actggcgatg ggaaagcttt gtaaataact actcgggttg aatattacag 3421 cttccagtta cagacagaaa caaaaaaaaa aggtttatta taatacttgc atatacatat 3481 ataaataaat aaataaacgc ctaaaaataa agacaattta