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LOCUS XM_017137381 3909 bp mRNA linear INV 09-DEC-2024 subunit (Caf1-180), mRNA. ACCESSION XM_017137381 VERSION XM_017137381.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137381.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3909 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3909 /gene="Caf1-180" /note="Chromatin assembly factor 1, p180 subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108054421" CDS 230..3568 /gene="Caf1-180" /codon_start=1 /product="chromatin assembly factor 1 subunit A-B" /protein_id="XP_016992870.2" /db_xref="GeneID:108054421" /translation="MPAGIAKTPIGGRTKEAPVAKSAERTSSGGKKFVQTRLPFKLLT PGGTSSSSAAAPSSSSSSSATTTVILDEEEPAPRKRKLSYGEEAPLEELRRSNSKENL DLASSKATKKVKTTDSLAEDVIELDDDDEDEAAAPVDEAMEEVVKTKPKKMEPKKASP APPIQIKLPLVNKRSKRRKSLKKSEESLDTSAKEATKEAASESSDDIEALAEELNPQK KQKVQKAAEKSPQKSPESKKTEEEEQEFTQKGEKESKKQEEPKKTTRESKKEETKATE PQKKNDQSTIDLFIAKKVEKQDSQPKEAPQKDAIKAQGKPKKAEPKAAEKSRKEDPKS QPQKEKEEKDSASKKKPTEKKAEESPDPAEISVILSSSEDNSSSSEHEMDVDTDTVPK EALHHRKSLPAETSDVQKALTPKQQRLLEQRKKAREEKEQKLAEERRHKQLEKEQREQ QKKQERDEKEQQRKLEKDQKEQQRKQEREEKERKRQAEVDTKNEEKRKRNEAKEEVQR KKDEERRKKEQEREEAEQKKKRAAESFTKFFVPKQIKSGGNVGGSLNTSYLEHEQSSC DSSKTSSQTLAFRPFQVKDDMLLAPIVRNSLAEEQRSQLDNLFRRRDEEDEDEEEEED IVRRKPPNRAHLYLSELSSGRREPLKMQRDARLQRRTKDEEEEDEVQVIDDLSNAGLP IEEEQPKQLARMRAKYLQFADNRRPAYYGTWRKKSLSISARRPLAQDKLHFDYELDSD CEWEEEEPGESLSASEDEKERESEEESEEEYNEWYVPHGHLSDEELQNDGEMDEGHTR EAQKAKLQVLQQEFAQEMKKQTKKIKPRLLGPVWLDENGNKSQLFPAIFAHTIDMYAC WQLEEPLSLEPPPETEREDQPGEQPVQLHLDERLMQQLVRLTHGNRNSKMFLINEYLE YLKSQAANAAATVLPSKAVLREKFDELASWKTVEMGTPEAANPAASSAKKSKKPKKRL CWVVASEMLDKFQLPELPLQNQWDYTLTPKISEGGDAAQQQHEQSPPGEVEGAAAASP VVATPTTPVSGQETAAKGAKKRATLIMSVPRDQPIHTATKNKLISQFLRRQSDAASNS GQQKEKEKKPPVVAVSDDVVMLSD" misc_feature <485..1813 /gene="Caf1-180" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 2318..>2449 /gene="Caf1-180" /note="Chromatin assembly factor 1 subunit A; Region: CAF1A; pfam12253" /db_xref="CDD:463507" misc_feature 2681..>3232 /gene="Caf1-180" /note="CAF1 complex subunit p150, region binding to CAF1-p60 at C-term; Region: CAF1-p150_C2; pfam15539" /db_xref="CDD:434777" polyA_site 3909 /gene="Caf1-180" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aagtgcaacc actgcttagc tgagttcccc acccagccga tagccgacaa tcgatctatc 61 gatcgcggca gcgaatctat tggcggcaat ccgcgcccac aactgccatc gctagtgtgt 121 tttcagcgcc tttttttcag cgctgcgcga ggcataaaaa caattgaggg atttgcttgg 181 ggaaaagtga gccgtgagac gcaggacaca ggaaaaggaa agcagcagaa tgcccgccgg 241 cattgcgaag accccgatcg gcggccggac gaaggaggcg ccggtggcca agtccgcgga 301 gagaacttcc agcggtggca agaagtttgt gcagacgcgt ctgccgttca agttgttgac 361 tccaggtggg acatcctcct cttccgccgc cgccccatcc tcctcctcct cctcctccgc 421 caccaccact gtgatcctgg acgaggagga gcccgctcca cgcaagcgga agctctccta 481 cggcgaggag gcgcctctgg aggagctgcg ccgctcgaac agcaaggaga acctcgattt 541 ggccagctcc aaggccacca agaaggtcaa gaccaccgat tctttggcgg aggacgtcat 601 cgagctggat gacgatgatg aagatgaggc tgctgctccg gttgacgagg cgatggagga 661 ggtggttaag acaaaaccca agaaaatgga gcccaagaaa gcgtcgccag cgccgcccat 721 tcaaatcaag ctgccgctgg tgaacaaacg atcgaagcgc aggaaatcgc tgaagaaatc 781 cgaggaatcc ctggacactt cggccaagga ggcgaccaag gaggcggcca gcgagtccag 841 cgatgatata gaggcactgg ccgaggagct caacccgcag aagaagcaga aggtgcagaa 901 agctgcagag aaatcccctc agaagagtcc cgaaagcaag aaaaccgagg aagaggagca 961 ggagttcacc caaaagggag aaaaggagtc caagaagcag gaggagccaa agaagacgac 1021 cagggaatca aagaaggaag agaccaaggc cacagagccc cagaagaaga acgatcagtc 1081 caccatagat ctctttatag ccaagaaggt ggagaagcag gattcccagc cgaaggaagc 1141 ccctcagaaa gacgccatca aagcccaggg aaaacccaag aaggcggaac ccaaagcagc 1201 ggaaaagagc aggaaagaag accccaagtc gcagccgcag aaagagaaag aagaaaaaga 1261 ttcagccagc aagaagaaac caacggaaaa gaaagccgaa gaatccccgg accccgctga 1321 aatctcggtg atcctctcga gcagcgagga caacagctcg agcagcgagc acgagatgga 1381 tgtggacacg gacacggtgc ccaaggaggc tctccaccac cggaagagcc tgcccgccga 1441 aaccagcgat gtgcagaagg ctctaacgcc caagcagcag cggctgctgg agcagcgcaa 1501 gaaggcgcgc gaggagaagg agcagaagct agccgaggag cggcgccaca agcagctgga 1561 gaaggagcag cgcgagcagc agaagaagca agagcgcgat gagaaggagc agcagcgaaa 1621 gcttgagaag gatcagaagg agcagcagcg gaagcaggag cgcgaggaga aggagcggaa 1681 gcggcaggcg gaggtggaca cgaagaacga ggagaagcgc aagcgcaacg aggccaagga 1741 ggaggtgcag cgcaagaagg acgaggagcg gcgcaagaag gagcaggagc gcgaggaggc 1801 ggagcagaaa aagaagcggg cggcggagtc ctttaccaag ttctttgtgc ccaagcagat 1861 caagtcggga ggcaacgttg gaggatccct caacacatcc tatctggagc acgagcagag 1921 cagctgcgac agctccaaaa ccagcagtca aacgctggcc tttcgcccgt tccaagtgaa 1981 ggacgacatg ctgctggcgc ccattgtgcg caattcgctg gctgaggagc agcgctccca 2041 gctggacaac ctcttcaggc gtcgcgatga ggaagatgag gatgaggagg aagaggagga 2101 cattgtcagg aggaagcccc ctaatcgagc ccatctctac ctcagcgaac tgagcagtgg 2161 gcgaagggag ccgctcaaga tgcagcgcga tgcccgccta caaaggcgca ccaaggatga 2221 ggaggaggag gacgaggtcc aagtgataga tgatctgtcc aatgccggcc tgcccatcga 2281 ggaggagcag cccaagcagc tggccaggat gcgggccaag tatctgcagt ttgcggacaa 2341 ccgcaggcca gcctactacg gcacctggcg caagaagagc ttgagtatct ccgctcgtcg 2401 cccgctggcc caggataagc tacacttcga ctacgaactg gactcggatt gcgagtggga 2461 ggaggaggag cccggcgaat cgctgagcgc cagcgaggat gagaaggagc gcgagtcgga 2521 ggaggagtcc gaggaggagt acaacgaatg gtatgtgccg catggccatc tcagcgacga 2581 ggagctgcag aacgatgggg aaatggacga ggggcatacg cgggaggcgc agaaggccaa 2641 gctgcaggtg ctgcagcagg aattcgccca ggagatgaag aagcagacga agaagatcaa 2701 gccgcgactc ctgggacccg tttggctgga cgagaatggc aacaagtcgc agctgtttcc 2761 tgccatcttt gcccacacca tcgacatgta tgcctgctgg cagctggagg agccgcttag 2821 cctggagcct ccaccggaaa cggagcgcga ggatcagccg ggcgagcagc cagtccaact 2881 acacctagac gaacgcctca tgcagcagct ggtgcgtttg acccacggca atcgcaactc 2941 gaagatgttc ctgatcaacg agtatttaga gtacctgaaa tcccaggcag ccaacgccgc 3001 cgccaccgtg ctgccctcga aggctgtgct gcgcgagaag ttcgatgagc tggccagctg 3061 gaagaccgtg gagatgggca caccagaagc tgctaatcct gccgcgagca gcgccaagaa 3121 atcgaagaag ccgaagaagc gcctctgctg ggtggtggcc agcgaaatgc tggacaagtt 3181 tcagctgccc gagttgccgc tgcagaatca gtgggactat acgctcaccc caaagatcag 3241 cgagggtggg gatgccgccc agcagcagca cgagcagagt ccgccggggg aagtggaagg 3301 tgccgccgct gcctcgcctg ttgtagcgac acccacaacg ccagttagtg gacaggagac 3361 ggcagccaag ggagccaaaa agcgggccac gctgatcatg tccgtgccca gggatcagcc 3421 catacacacg gccaccaaga acaagctgat cagccagttt ctgcgacgcc agagcgatgc 3481 agccagcaat tccggccaac aaaaggaaaa ggaaaagaag ccacccgtcg tcgcagtcag 3541 cgatgatgtg gtgatgctct cggactagat taggataggc ttaggataga tagataactt 3601 ccaagagaga aaccttcctg ctaggcgtgt gtattcaaaa tattcaaaat atccaaaaca 3661 tttttttcat tcgttgtaag ttgatttaat ttttaatgtt ctccccgatg tacgttcgac 3721 ttgtatgtcc tccccaagca ttaagcatcc tcaccatctc catcaaccac tcatctgtag 3781 atctgtttgg aggttcagcg aaacgagtac tcactaactg taattatctc ggtacgtttc 3841 gatcgcatcg atgaaccatc tatacatata tagtatatat gcaataatac attaccccat 3901 gatctttta