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LOCUS XM_017137380 2436 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_017137380 VERSION XM_017137380.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137380.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2436 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2436 /gene="oc" /note="ocelliless; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108054420" CDS 688..2325 /gene="oc" /codon_start=1 /product="homeotic protein ocelliless isoform X2" /protein_id="XP_016992869.2" /db_xref="GeneID:108054420" /translation="MAAGFLKSGDLGPHPHSYGGPHPHHSVPHGPLPPGMPMPSLGPF GLPHGLEAVGFSQGVNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKIN LPESRVQVWFKNRRAKCRQQLQQQQQSNSLSSSKNASGSGSCSSSSANSRNNNNNSSN NNNSSSSHNNSQSSGGGNNKSSQKGSHNNNSQSSSSGNNSNNQNQNNNSAAAAASAAA AVAAAQSIKTHHSSFLSAAAAAASGGTNQSGGGGSNNQGGGGGNSTPNSSSSGGSGGG GGGQAGHLSAAAAAAALNVTAAHQNSSPLLPTPATSVSPVSIVCKKEHLSGGGGGGGG GGYSGVGVGGNNASSVGLNLGVVGGVGVSQDLLRSPYDQLKDAGGDIGAGVHHHHSIY GSAAGSNPRLLQPGGNITPMDSSSSITTPSPPITPMSPQSAAAAAHAAQSAQSAHHSA AHSAAYMSNHDSYNFWHNQYQQYPNNYAQAPSYYSQMEYFSNQNQVNYNMGHSGYTAS NFGLSPSPSFTGTVSAQAFSQNSLDYMSPQDKYANMV" misc_feature 880..1047 /gene="oc" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" ORIGIN 1 tgccgctcgg gttgtttttg tgcgtcgtcc gtcgctcagt tgctcagttg ctcattcgcc 61 ccgttcgccg ctcgttcgat cgctctcgct actcgccgcg ttcgccgata agccataagc 121 cataggccaa taacaacaat caattcgccg tcgccaaagc aaagcaaaca aacaaaaatc 181 aaaacaaaaa gctatatagc tccatagcta tagctattga gaaacaacaa caacaagtcg 241 gagagaaata tactaagtaa taagggatat acaacacaga tatatccaag tgccagtgac 301 gagaatctgt ttttttaccg tgttgccagt gccaaacaat aaacatcgcc ccaaaaaaca 361 aacatctctc tggaatacaa aacatataat atatatatat atatgttata tatatatatg 421 cccaagctat agccatatag tagctggatc tgaaaacaag tcgccattgg aatacagcac 481 cgttttgcct ctagttttct ttgtgttttt ttttcgatcg cagatcagaa gcacaaccag 541 cgaattatct gagtggagta ccatatagcc agtatagtgg accgatccat cgatagacat 601 ccgatagaca cggatatcga ctatcggagc ctggggccag tggagacaca cagcttcaac 661 gtggcgctgc actcgaccga ggccttgatg gcggcgggct tcctcaagtc gggcgatctg 721 ggcccccatc cgcacagcta cgggggtccg cacccgcacc actcggtgcc ccacggaccc 781 ctgccgccgg gcatgcccat gccctcgctg gggcccttcg gcctcccaca cggactggag 841 gccgtcgggt tctcccaagg cgtcaacaca cgaaaacagc gtcgcgaacg caccacattc 901 acacgcgccc aattggacgt cttggaggcg ctgttcggca agacccgtta cccggacatt 961 ttcatgcgcg aggaggtggc cctcaagatc aatctgcccg aatccagagt acaggtgtgg 1021 ttcaagaatc gtcgcgccaa gtgccgccag cagttgcagc agcagcagca gtcgaacagc 1081 ctcagcagct cgaaaaatgc cagcggcagc ggcagttgca gcagttcctc ggccaacagt 1141 cgcaacaaca acaacaacag cagcaacaac aacaacagca gtagcagcca caacaactca 1201 cagagctccg gcggtggcaa taacaaatca agccaaaagg gcagccacaa caacaactca 1261 cagtcgagct ccagcggcaa caacagcaac aaccagaacc agaacaacaa ttcagcggca 1321 gcagcggcca gtgcagcggc agcggtggca gcggcccaat cgatcaaaac gcaccacagt 1381 tcctttttga gcgccgccgc ggcggcagcc tcgggcggta caaatcaatc gggcggtggt 1441 ggcagtaata atcaaggggg cggtggcggc aattcgacgc ccaacagcag cagcagcggc 1501 ggcagcgggg gcggcggcgg cggtcaggcg ggccatctct cggcggcggc agcggcggcg 1561 gccctcaatg tgacggccgc ccaccagaac tcctcgcccc tcttgcccac gccggccacg 1621 tcggtgagtc cggtgagcat tgtgtgcaaa aaggagcatt tgtcgggcgg cggaggaggt 1681 ggtggaggag gaggctatag tggcgttgga gtgggcggta acaatgcctc ctcggtgggc 1741 ctgaacctag gcgtcgttgg cggcgttggc gtctcccagg atctcctgcg atccccctac 1801 gatcaactca aagacgccgg tggcgatatt ggagccgggg tgcatcatca tcacagcatc 1861 tatggctcgg cggccggcag caatccccgc ctgctgcagc ccggcggcaa tatcacaccg 1921 atggacagca gcagcagcat caccacccca tcgccgccca tcacaccgat gtcgccgcaa 1981 tcggcggccg cagcggccca tgccgcccaa tcggcccagt ccgcccacca ttccgccgcc 2041 cattcggctg cctatatgtc caatcacgat tcgtacaact tctggcacaa ccagtaccag 2101 caatacccga ataactacgc ccaggcgccc agctactact cgcagatgga gtactttagc 2161 aatcagaatc aggtcaacta caatatgggc cactcgggct atacggcctc caatttcgga 2221 ctatccccgt cgccctcgtt caccggcacc gtttcggcgc aggccttctc gcagaacagc 2281 ctggactaca tgtcgccgca ggataagtac gcgaatatgg tgtagaacct actctttcaa 2341 tactgcagcg gaggcaacag caacaacaac aacagtagtt cggggggtga gggttcggga 2401 tcgggatcag gatccggatc ggggagcaat agttcc