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LOCUS XM_017137367 6564 bp mRNA linear INV 09-DEC-2024 (Trf4-1), transcript variant X3, mRNA. ACCESSION XM_017137367 VERSION XM_017137367.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137367.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6564 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6564 /gene="Trf4-1" /note="Topoisomerase related function 4-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108054412" CDS 307..3291 /gene="Trf4-1" /codon_start=1 /product="non-canonical poly(A) RNA polymerase protein Trf4-1 isoform X1" /protein_id="XP_016992856.2" /db_xref="GeneID:108054412" /translation="MDPFVGWFQKEQEGPSLRTWLKIWETNAQEMGALLDQQLQQATT TNGSSSSSNNNSSSNNNNNSTTNNIGNNLTGKPYLSRPNSSLNRLLNFRGDSVENGTT QRNSSAADSTTNRDNSSPTNSSSTNGPGTAGGSGGGGGSGSNSPANTAAATTTTGPPA TSNSSSSNSMSDTSNNPPQTTTTTTTTPAASRTNNSIYYNPSRKKRPENKAGGGGHYY MNNHMEMIAKYKGEPWRKPDYPYGEGVIGLHEEIEHFYQYVLPTPCEHAIRNEVVKRI EAVVHSIWPQAVVEIFGSFRTGLFLPTSDIDLVVLGLWEKLPLRTLEFELVSRGIAEA CTVRVLDKASVPIIKLTDRETQVKVDISFNMQSGVQSAELIKKFKRDYPVLGKLVLVL KQFLLLRDLNEVFTGGISSYSLILMCISFLQMHPRGIYHDTANLGVLLLEFFELYGRR FNYMKIGISIKNGGRYMPKDELQRDMVDGHRPSLLCIEDPLTPGNDIGRSSYGVFQVQ QAFKCAYRVLALAVSPLNLLGIDPRVNSILGRIIHITDDVIDYREWIRENFEHLVVVD RISPLPTAPAAYAASNGAPKYVIMPSGAVVQQLYHHPQQVQVQTTAHGGHSHSHHGHL HPLGQPFVTGTAAASGATTTTSSTTVALVGGVAISAGGGVQQQQQLQQQLQQQQQNAT NAHSHAQSQQSQQNQSQSRHRRGSTSSGDDSEDSKDCDVVETTTLTGGQEVIDITLSP PNGLGSSMPVQPSNWSAGGNGNINSSSSSSPENNAAATQEMVDPEMEPDQQQQQQQQQ HHQQHHHQETSGVSSASSSSTGGGSGRNYNQRGNHNSSGYYHQQYYVPPPMQQQQQQQ LSKSNSNSSSSNYHQQHHHSHSNHSHRQQQQQHHHQQQQQHHQQRPQHLRLGGNRYQK SVGGSPTISASNSSSNSSNSSSTSGSNSNNNRLPPLRGTLVNSSSAISIISISSESSI ASSSSSSSRSGQDQQQNERDER" misc_feature 1048..2085 /gene="Trf4-1" /note="DNA polymerase sigma [Replication, recombination and repair]; Region: TRF4; COG5260" /db_xref="CDD:227585" polyA_site 6564 /gene="Trf4-1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggagttttcc tctgccaaat gcaacttaat tcttaaggaa aattcagcca acaaatgaaa 61 atcggatcgg ctcttgaatg ctgaaaaact gaaagagttg aaggcccaag acgataactc 121 cattcccctg tggaacacac agcccacaga tctctaccga tccatataga gaaacatcta 181 tataatatat catattataa taaacgcagg acgcaagggg gaagagagac gaaggaagga 241 cgaagcgaag gaggacgcgc ccctctcgtt tcccgcccag ccaacagccg tgtgaaagcg 301 tcttgaatgg atccatttgt tggctggttt cagaaggaac aggagggacc atcgctgcgc 361 acatggttaa agatttggga gacgaatgcc caggagatgg gcgcattgct tgatcaacag 421 ctacagcagg cgacgacgac caacggcagc agcagcagca gcaacaataa tagcagtagc 481 aacaacaaca acaattctac taccaataat attggtaaca atttaacggg caagccctat 541 ttatcgcgac ccaacagctc gctaaatcga ttgctgaatt tccgcggcga ttctgtagag 601 aacggaacca ctcagcggaa cagttcagcg gctgattcca ccacaaatcg ggataacagc 661 tcacccacca acagcagttc aaccaacgga cccggaacag caggaggatc aggaggagga 721 ggaggaagcg gatccaatag tccggccaac acagctgctg ccaccacaac gactgggcca 781 ccagccacta gcaacagcag cagcagcaac agcatgagtg acactagcaa caacccgcca 841 cagacaacga caacgacaac aaccacgccc gccgccagtc gcacgaacaa cagcatctac 901 tacaatccgt cgcggaagaa acggcccgag aacaaagcag gcggcggtgg gcattactat 961 atgaacaacc acatggagat gatagccaaa tacaagggtg aaccgtggcg caagccagac 1021 tatccgtatg gcgagggcgt tattgggctg cacgaggaga tcgagcactt ctatcagtat 1081 gtcctgccca cgccctgcga acatgccatt cggaacgagg tggtcaagcg catcgaggcc 1141 gttgtccatt ccatctggcc acaggcggtg gtcgagatct ttggttcctt tcgcaccggc 1201 ctctttttgc ccacctccga cattgatctc gttgtgctag gtttgtggga gaaactgccg 1261 ctgcgcacgc tggaattcga gctagtgagc cgcggcatcg ccgaggcctg cacagttcgt 1321 gtcctggaca aggcatccgt gcccatcatc aagctgacgg atagggagac gcaagtgaag 1381 gtagacatat cgttcaacat gcagagcggc gttcagtcgg cggagctaat taagaagttc 1441 aagcgcgact atccggtgct ggggaagctg gtgctggtgc tcaagcagtt cctgctgctg 1501 cgcgatctca acgaggtgtt caccggcggc atctcgtcct actcgctgat cctcatgtgc 1561 atcagcttcc tgcagatgca tccgcgtggc atttaccacg ataccgccaa tctgggtgtg 1621 ctgctcctcg agttctttga gctttacggc cgtcgtttca actacatgaa gattgggatc 1681 tcgatcaaga acggcggacg gtatatgccc aaggatgagc tgcagcgcga catggtcgac 1741 ggccatcggc catcgcttct ctgcatcgag gatccgctga cgccgggcaa cgatatcgga 1801 cgcagcagct acggggtctt tcaggtgcag caggccttca agtgcgccta ccgcgtcctc 1861 gccctcgccg ttagtccgct caacctcctc ggcatcgatc cacgggtcaa ttccatactg 1921 ggtcgaatca tccacatcac cgacgacgta atcgactacc gcgaatggat ccgcgagaac 1981 ttcgagcatc tggtggtggt ggaccgcatc tcgccgctgc ccaccgcacc cgctgcgtac 2041 gccgcctcga atggggcgcc caaatatgtg atcatgccct cgggcgccgt tgtccagcag 2101 ctgtaccacc atccgcagca ggtgcaggtg caaaccacag cccacggagg gcatagccat 2161 agccatcacg gccatttgca tccgcttggc cagccgtttg tcaccggaac agctgctgca 2221 tctggggcga caacgacgac gtcgtcgacg acggtggcgt tggttggcgg agtggccatc 2281 tcagccggcg gaggagtcca acagcagcag cagctgcagc aacagcttca gcagcagcaa 2341 cagaatgcca cgaatgccca ttcccatgcg cagtcgcagc agtcgcagca gaaccaatcg 2401 cagtcgcgtc acagacgtgg cagcacctcc tctggcgatg attccgagga cagcaaagac 2461 tgcgatgtgg tcgagacgac gacgttgacg ggcggacagg aggtcatcga tatcacgctg 2521 tcgccgccga atggcctcgg ctcctccatg ccggtgcagc cgagcaattg gagtgccggt 2581 ggcaatggaa acatcaacag cagctcatcc tcgtcgccgg aaaacaacgc cgccgcaacg 2641 caggagatgg tggacccaga gatggaacca gatcagcagc agcagcagca acagcagcag 2701 catcatcagc aacatcacca ccaagagact tccggagtta gtagtgcctc ctcctcctcc 2761 actggaggag gctctggacg caactacaat cagcgcggca accacaattc cagtggctac 2821 taccaccagc agtactacgt gccaccgccg atgcaacagc agcagcagca gcagctgagc 2881 aagtccaatt caaactcctc ctcctccaac tatcaccagc agcaccatca cagccatagc 2941 aaccatagtc accggcagca gcagcagcaa catcaccacc agcaacagca gcagcatcac 3001 cagcagcgac cgcagcattt gcgactgggc ggcaatcgct accagaaatc ggtaggtgga 3061 tcgcccacca tcagtgcatc gaacagcagc agcaacagca gcaacagtag cagcaccagc 3121 gggagcaaca gcaacaacaa tcgactgccg ccgctgcgag ggacgctggt gaactcgtcg 3181 tcggctatat caatcatttc catatcctca gaatcatcca ttgccagcag cagcagcagc 3241 tcctcgcgat ccggtcagga tcagcagcag aacgagcggg atgagcgata ggattaggct 3301 gtaggatgta ggatgtagga tctaggatct aggctacagg aagagattgt gaatgagaga 3361 gagaaagaga tagttacgag ttagcaatat ttatggatta tatttctttc tcaggttaac 3421 tgcaaactat gctgcatttt tctaattaat attcctgctc ctgctcctca cttcctgcct 3481 tcacctcctc caaatcccac aacaaactaa tgtttagact ttattttaca ttgctgtctc 3541 gcttaaatta gaagagcgaa ggaaacctat taagcttaat attaggaact ttgcctctga 3601 tttcgctaaa tgtatttcat tttgtttcta aaataaacat gaaagcaaac aacaacaaaa 3661 aaaacaagaa agcaaaaaaa aaaatatata tatagatata tattagataa aaacggtata 3721 aatataaatg taaactcata attagattgt aatggtttaa aagagcgata aactgaagta 3781 tgaaattagc tgctaacata tttaaggtcc gcaaacatat gtttctaaat ctctctagag 3841 ctccaacccc cccgcatcca atgtagtttc cctaaaggct ctacgtttca agcaaatgtt 3901 ttgtaaacta aaaatccaac ccgcactccc taaaaaaaaa aacaaaaaac gaaaatactg 3961 cgcgcaattc ttacgctaat attactaagt gaatttgcgc gcaaattgta aaaaaaaaaa 4021 gtaacatata tatacgaaaa gctaaaaatc ccatttttcc taccatcttc ctcgtaacct 4081 aacctactca taaacttctt ctattttact tcaagttaat tttatgcctg aaatgtatat 4141 gtttttatga ttatgattat gcttaccatt attactattt tgattacgat gcttattatt 4201 agtttttata actaagctca gaggataacg agccaactaa aattgtaatt aaacacattg 4261 ctcagaccta aaaagcaact ctacttttaa gcagaaacaa acaaaaaaaa accaacacaa 4321 aaacgacaaa aaaaaaacaa aaacctacaa caacaagaaa cgcatctttt gtttaaactt 4381 actgtacgtt tagttgatta ttatgattat gcaatgttgt gcatttcgca tagattcctg 4441 ccatttgttt tgtatagttc acaaagctct gtaaatactt agttaccgcc ccccgccccg 4501 cccactgtga cacccccacc cgctcccgcc ccctctaaac gcactgccat tttgagaaag 4561 gtttttaaaa aacacgtcga aaaggagcta gcagaaaaaa aagagtagaa aagaacattt 4621 agactttgta catgtataac attttaggct gttcttcttt ccatttgtaa gagaaaacaa 4681 agaaagcaaa acaaaaataa taccaaacaa gaaacaaaag caaaagctaa agcaaaaacc 4741 gaactaattg taaaatcact taaatagtct acgaatatgt ttgtcaatcg ttttgtacgc 4801 gagtctggag tatagagatc aatttcggat ctgtaatgct aggcagcaaa attttttaat 4861 gttcatttga gagtaccact tccttttccg attcatatga gatcgtaaat gacaaaaaaa 4921 aaaggagacg tctttaaaat gtatatatca aaacatgttg caatatttta atattgatta 4981 cttttgttgg gtgtgattgt gttttttttt gttttttgta tcgtgtaaac cagatgtaaa 5041 cagaatttgt taattctcct attaattaat tttaatatta aaaaatagtt ttcactttcg 5101 ctttttttta aattcctttc taaacatggt tgtaaaaagg cttgttttcg aataatgagc 5161 taagagttga aatatcgaaa gaggttgaaa accttaatga agatgaattt cgttgacgaa 5221 tcgatcaata tactaagcaa aagtgttcta aataatttaa gttattcatt gaaaaacgcg 5281 tttcttaaag tcatttagga acctcaatgg tttggaaaac atgaagttcg gtacaatatc 5341 ttttttttat gttgccttgt gtgaataaag ctatgtccag tgttggcaaa ggccgaaggt 5401 gctctctccc tttcgcacga tgactcctac aagcttgcag ctgagctatg aagcccacct 5461 tacacacact ttctcgctca cccacatcac aaacatacac acacaggcgc ataagcactc 5521 acacagacac ccagcccaaa cagagaggga cacataacgg taaagatagc atagaaattt 5581 gaaaaaatcg tgaagagaag gcaaggagcc gtaagtgaga atgagatagc gatagagcga 5641 gagagggagt aatcgtataa gaattattaa atttatgcac tcgtctgttg aatatttata 5701 tgaattatat gtatgtagtt actaatatta actaattgat aaatatacaa tatttatatg 5761 cataacttgt ggattaatgt ggacaaacaa atgtttagaa ttagcgattt agccacgtaa 5821 gactcgtaaa tcgtaaatcg taaatcgaaa actacttaga ctacataact gtgtaccaga 5881 gcatatgtaa gcactcccac acacacacac aagaagaaat acatcacagc cacaacacaa 5941 ctcacgcata atcgctatga atgttgaggt tatgtcgtag atttttcaat atcgatcact 6001 gttcgcttag cctagcaagt aagccgaaga actaactgta aaactaactc atttctttac 6061 tggattccat gcgtctcgtc cttttcccct tatccattgt ccctcggttt tcgttttggg 6121 ctatcgtttc gattttatga ttcccatcca aaccaaacag atccaatcca atccccaatc 6181 ccaaacacca ttctaattat tctattcgca tttgctcttc cttccttcca taatacgcat 6241 atgtcctgtg tgccgttgtt gttatatata cacaagcata tactcgaaaa aaaacatttt 6301 tttgtcgtcg cgatattaga gggtattaat aaattaaatt aaatttaatt aactacattt 6361 aacgcaacta aattcaattc aagtgaatca aatgaatcga tcgatacatg tatatgatag 6421 agttcaatag ctgtgtaaga atcggaatcg taacaattta gtatgcaaaa atcgtaaatc 6481 taactgattg tataattagc gaaaagagaa aacggaagcg ataagcaaaa cgatgcgaca 6541 aataaaagcc ggcaaaaact aaaa