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LOCUS XM_017137366 6689 bp mRNA linear INV 09-DEC-2024 (Trf4-1), transcript variant X2, mRNA. ACCESSION XM_017137366 VERSION XM_017137366.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137366.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6689 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6689 /gene="Trf4-1" /note="Topoisomerase related function 4-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108054412" CDS 432..3416 /gene="Trf4-1" /codon_start=1 /product="non-canonical poly(A) RNA polymerase protein Trf4-1 isoform X1" /protein_id="XP_016992855.2" /db_xref="GeneID:108054412" /translation="MDPFVGWFQKEQEGPSLRTWLKIWETNAQEMGALLDQQLQQATT TNGSSSSSNNNSSSNNNNNSTTNNIGNNLTGKPYLSRPNSSLNRLLNFRGDSVENGTT QRNSSAADSTTNRDNSSPTNSSSTNGPGTAGGSGGGGGSGSNSPANTAAATTTTGPPA TSNSSSSNSMSDTSNNPPQTTTTTTTTPAASRTNNSIYYNPSRKKRPENKAGGGGHYY MNNHMEMIAKYKGEPWRKPDYPYGEGVIGLHEEIEHFYQYVLPTPCEHAIRNEVVKRI EAVVHSIWPQAVVEIFGSFRTGLFLPTSDIDLVVLGLWEKLPLRTLEFELVSRGIAEA CTVRVLDKASVPIIKLTDRETQVKVDISFNMQSGVQSAELIKKFKRDYPVLGKLVLVL KQFLLLRDLNEVFTGGISSYSLILMCISFLQMHPRGIYHDTANLGVLLLEFFELYGRR FNYMKIGISIKNGGRYMPKDELQRDMVDGHRPSLLCIEDPLTPGNDIGRSSYGVFQVQ QAFKCAYRVLALAVSPLNLLGIDPRVNSILGRIIHITDDVIDYREWIRENFEHLVVVD RISPLPTAPAAYAASNGAPKYVIMPSGAVVQQLYHHPQQVQVQTTAHGGHSHSHHGHL HPLGQPFVTGTAAASGATTTTSSTTVALVGGVAISAGGGVQQQQQLQQQLQQQQQNAT NAHSHAQSQQSQQNQSQSRHRRGSTSSGDDSEDSKDCDVVETTTLTGGQEVIDITLSP PNGLGSSMPVQPSNWSAGGNGNINSSSSSSPENNAAATQEMVDPEMEPDQQQQQQQQQ HHQQHHHQETSGVSSASSSSTGGGSGRNYNQRGNHNSSGYYHQQYYVPPPMQQQQQQQ LSKSNSNSSSSNYHQQHHHSHSNHSHRQQQQQHHHQQQQQHHQQRPQHLRLGGNRYQK SVGGSPTISASNSSSNSSNSSSTSGSNSNNNRLPPLRGTLVNSSSAISIISISSESSI ASSSSSSSRSGQDQQQNERDER" misc_feature 1173..2210 /gene="Trf4-1" /note="DNA polymerase sigma [Replication, recombination and repair]; Region: TRF4; COG5260" /db_xref="CDD:227585" polyA_site 6689 /gene="Trf4-1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgtgcgtgt gtgagtgtct cgctgcgtgc gagtgtgtgt gtgtgtgcat aaaaaggcat 61 agaggcaaga aggagtgaaa gagagagcca gaaattgtta gtgcttataa ggatatatat 121 agtgaggagg gagagagaga gagagcgacg gagagagaag agtgcgaaga agcagcagcg 181 acgccgacaa caactctctt gaatgctgaa aaactgaaag agttgaaggc ccaagacgat 241 aactccattc ccctgtggaa cacacagccc acagatctct accgatccat atagagaaac 301 atctatataa tatatcatat tataataaac gcaggacgca agggggaaga gagacgaagg 361 aaggacgaag cgaaggagga cgcgcccctc tcgtttcccg cccagccaac agccgtgtga 421 aagcgtcttg aatggatcca tttgttggct ggtttcagaa ggaacaggag ggaccatcgc 481 tgcgcacatg gttaaagatt tgggagacga atgcccagga gatgggcgca ttgcttgatc 541 aacagctaca gcaggcgacg acgaccaacg gcagcagcag cagcagcaac aataatagca 601 gtagcaacaa caacaacaat tctactacca ataatattgg taacaattta acgggcaagc 661 cctatttatc gcgacccaac agctcgctaa atcgattgct gaatttccgc ggcgattctg 721 tagagaacgg aaccactcag cggaacagtt cagcggctga ttccaccaca aatcgggata 781 acagctcacc caccaacagc agttcaacca acggacccgg aacagcagga ggatcaggag 841 gaggaggagg aagcggatcc aatagtccgg ccaacacagc tgctgccacc acaacgactg 901 ggccaccagc cactagcaac agcagcagca gcaacagcat gagtgacact agcaacaacc 961 cgccacagac aacgacaacg acaacaacca cgcccgccgc cagtcgcacg aacaacagca 1021 tctactacaa tccgtcgcgg aagaaacggc ccgagaacaa agcaggcggc ggtgggcatt 1081 actatatgaa caaccacatg gagatgatag ccaaatacaa gggtgaaccg tggcgcaagc 1141 cagactatcc gtatggcgag ggcgttattg ggctgcacga ggagatcgag cacttctatc 1201 agtatgtcct gcccacgccc tgcgaacatg ccattcggaa cgaggtggtc aagcgcatcg 1261 aggccgttgt ccattccatc tggccacagg cggtggtcga gatctttggt tcctttcgca 1321 ccggcctctt tttgcccacc tccgacattg atctcgttgt gctaggtttg tgggagaaac 1381 tgccgctgcg cacgctggaa ttcgagctag tgagccgcgg catcgccgag gcctgcacag 1441 ttcgtgtcct ggacaaggca tccgtgccca tcatcaagct gacggatagg gagacgcaag 1501 tgaaggtaga catatcgttc aacatgcaga gcggcgttca gtcggcggag ctaattaaga 1561 agttcaagcg cgactatccg gtgctgggga agctggtgct ggtgctcaag cagttcctgc 1621 tgctgcgcga tctcaacgag gtgttcaccg gcggcatctc gtcctactcg ctgatcctca 1681 tgtgcatcag cttcctgcag atgcatccgc gtggcattta ccacgatacc gccaatctgg 1741 gtgtgctgct cctcgagttc tttgagcttt acggccgtcg tttcaactac atgaagattg 1801 ggatctcgat caagaacggc ggacggtata tgcccaagga tgagctgcag cgcgacatgg 1861 tcgacggcca tcggccatcg cttctctgca tcgaggatcc gctgacgccg ggcaacgata 1921 tcggacgcag cagctacggg gtctttcagg tgcagcaggc cttcaagtgc gcctaccgcg 1981 tcctcgccct cgccgttagt ccgctcaacc tcctcggcat cgatccacgg gtcaattcca 2041 tactgggtcg aatcatccac atcaccgacg acgtaatcga ctaccgcgaa tggatccgcg 2101 agaacttcga gcatctggtg gtggtggacc gcatctcgcc gctgcccacc gcacccgctg 2161 cgtacgccgc ctcgaatggg gcgcccaaat atgtgatcat gccctcgggc gccgttgtcc 2221 agcagctgta ccaccatccg cagcaggtgc aggtgcaaac cacagcccac ggagggcata 2281 gccatagcca tcacggccat ttgcatccgc ttggccagcc gtttgtcacc ggaacagctg 2341 ctgcatctgg ggcgacaacg acgacgtcgt cgacgacggt ggcgttggtt ggcggagtgg 2401 ccatctcagc cggcggagga gtccaacagc agcagcagct gcagcaacag cttcagcagc 2461 agcaacagaa tgccacgaat gcccattccc atgcgcagtc gcagcagtcg cagcagaacc 2521 aatcgcagtc gcgtcacaga cgtggcagca cctcctctgg cgatgattcc gaggacagca 2581 aagactgcga tgtggtcgag acgacgacgt tgacgggcgg acaggaggtc atcgatatca 2641 cgctgtcgcc gccgaatggc ctcggctcct ccatgccggt gcagccgagc aattggagtg 2701 ccggtggcaa tggaaacatc aacagcagct catcctcgtc gccggaaaac aacgccgccg 2761 caacgcagga gatggtggac ccagagatgg aaccagatca gcagcagcag cagcaacagc 2821 agcagcatca tcagcaacat caccaccaag agacttccgg agttagtagt gcctcctcct 2881 cctccactgg aggaggctct ggacgcaact acaatcagcg cggcaaccac aattccagtg 2941 gctactacca ccagcagtac tacgtgccac cgccgatgca acagcagcag cagcagcagc 3001 tgagcaagtc caattcaaac tcctcctcct ccaactatca ccagcagcac catcacagcc 3061 atagcaacca tagtcaccgg cagcagcagc agcaacatca ccaccagcaa cagcagcagc 3121 atcaccagca gcgaccgcag catttgcgac tgggcggcaa tcgctaccag aaatcggtag 3181 gtggatcgcc caccatcagt gcatcgaaca gcagcagcaa cagcagcaac agtagcagca 3241 ccagcgggag caacagcaac aacaatcgac tgccgccgct gcgagggacg ctggtgaact 3301 cgtcgtcggc tatatcaatc atttccatat cctcagaatc atccattgcc agcagcagca 3361 gcagctcctc gcgatccggt caggatcagc agcagaacga gcgggatgag cgataggatt 3421 aggctgtagg atgtaggatg taggatctag gatctaggct acaggaagag attgtgaatg 3481 agagagagaa agagatagtt acgagttagc aatatttatg gattatattt ctttctcagg 3541 ttaactgcaa actatgctgc atttttctaa ttaatattcc tgctcctgct cctcacttcc 3601 tgccttcacc tcctccaaat cccacaacaa actaatgttt agactttatt ttacattgct 3661 gtctcgctta aattagaaga gcgaaggaaa cctattaagc ttaatattag gaactttgcc 3721 tctgatttcg ctaaatgtat ttcattttgt ttctaaaata aacatgaaag caaacaacaa 3781 caaaaaaaac aagaaagcaa aaaaaaaaat atatatatag atatatatta gataaaaacg 3841 gtataaatat aaatgtaaac tcataattag attgtaatgg tttaaaagag cgataaactg 3901 aagtatgaaa ttagctgcta acatatttaa ggtccgcaaa catatgtttc taaatctctc 3961 tagagctcca acccccccgc atccaatgta gtttccctaa aggctctacg tttcaagcaa 4021 atgttttgta aactaaaaat ccaacccgca ctccctaaaa aaaaaaacaa aaaacgaaaa 4081 tactgcgcgc aattcttacg ctaatattac taagtgaatt tgcgcgcaaa ttgtaaaaaa 4141 aaaaagtaac atatatatac gaaaagctaa aaatcccatt tttcctacca tcttcctcgt 4201 aacctaacct actcataaac ttcttctatt ttacttcaag ttaattttat gcctgaaatg 4261 tatatgtttt tatgattatg attatgctta ccattattac tattttgatt acgatgctta 4321 ttattagttt ttataactaa gctcagagga taacgagcca actaaaattg taattaaaca 4381 cattgctcag acctaaaaag caactctact tttaagcaga aacaaacaaa aaaaaaccaa 4441 cacaaaaacg acaaaaaaaa aacaaaaacc tacaacaaca agaaacgcat cttttgttta 4501 aacttactgt acgtttagtt gattattatg attatgcaat gttgtgcatt tcgcatagat 4561 tcctgccatt tgttttgtat agttcacaaa gctctgtaaa tacttagtta ccgccccccg 4621 ccccgcccac tgtgacaccc ccacccgctc ccgccccctc taaacgcact gccattttga 4681 gaaaggtttt taaaaaacac gtcgaaaagg agctagcaga aaaaaaagag tagaaaagaa 4741 catttagact ttgtacatgt ataacatttt aggctgttct tctttccatt tgtaagagaa 4801 aacaaagaaa gcaaaacaaa aataatacca aacaagaaac aaaagcaaaa gctaaagcaa 4861 aaaccgaact aattgtaaaa tcacttaaat agtctacgaa tatgtttgtc aatcgttttg 4921 tacgcgagtc tggagtatag agatcaattt cggatctgta atgctaggca gcaaaatttt 4981 ttaatgttca tttgagagta ccacttcctt ttccgattca tatgagatcg taaatgacaa 5041 aaaaaaaagg agacgtcttt aaaatgtata tatcaaaaca tgttgcaata ttttaatatt 5101 gattactttt gttgggtgtg attgtgtttt tttttgtttt ttgtatcgtg taaaccagat 5161 gtaaacagaa tttgttaatt ctcctattaa ttaattttaa tattaaaaaa tagttttcac 5221 tttcgctttt ttttaaattc ctttctaaac atggttgtaa aaaggcttgt tttcgaataa 5281 tgagctaaga gttgaaatat cgaaagaggt tgaaaacctt aatgaagatg aatttcgttg 5341 acgaatcgat caatatacta agcaaaagtg ttctaaataa tttaagttat tcattgaaaa 5401 acgcgtttct taaagtcatt taggaacctc aatggtttgg aaaacatgaa gttcggtaca 5461 atatcttttt tttatgttgc cttgtgtgaa taaagctatg tccagtgttg gcaaaggccg 5521 aaggtgctct ctccctttcg cacgatgact cctacaagct tgcagctgag ctatgaagcc 5581 caccttacac acactttctc gctcacccac atcacaaaca tacacacaca ggcgcataag 5641 cactcacaca gacacccagc ccaaacagag agggacacat aacggtaaag atagcataga 5701 aatttgaaaa aatcgtgaag agaaggcaag gagccgtaag tgagaatgag atagcgatag 5761 agcgagagag ggagtaatcg tataagaatt attaaattta tgcactcgtc tgttgaatat 5821 ttatatgaat tatatgtatg tagttactaa tattaactaa ttgataaata tacaatattt 5881 atatgcataa cttgtggatt aatgtggaca aacaaatgtt tagaattagc gatttagcca 5941 cgtaagactc gtaaatcgta aatcgtaaat cgaaaactac ttagactaca taactgtgta 6001 ccagagcata tgtaagcact cccacacaca cacacaagaa gaaatacatc acagccacaa 6061 cacaactcac gcataatcgc tatgaatgtt gaggttatgt cgtagatttt tcaatatcga 6121 tcactgttcg cttagcctag caagtaagcc gaagaactaa ctgtaaaact aactcatttc 6181 tttactggat tccatgcgtc tcgtcctttt ccccttatcc attgtccctc ggttttcgtt 6241 ttgggctatc gtttcgattt tatgattccc atccaaacca aacagatcca atccaatccc 6301 caatcccaaa caccattcta attattctat tcgcatttgc tcttccttcc ttccataata 6361 cgcatatgtc ctgtgtgccg ttgttgttat atatacacaa gcatatactc gaaaaaaaac 6421 atttttttgt cgtcgcgata ttagagggta ttaataaatt aaattaaatt taattaacta 6481 catttaacgc aactaaattc aattcaagtg aatcaaatga atcgatcgat acatgtatat 6541 gatagagttc aatagctgtg taagaatcgg aatcgtaaca atttagtatg caaaaatcgt 6601 aaatctaact gattgtataa ttagcgaaaa gagaaaacgg aagcgataag caaaacgatg 6661 cgacaaataa aagccggcaa aaactaaaa