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LOCUS XM_017137365 6684 bp mRNA linear INV 09-DEC-2024 (Trf4-1), transcript variant X1, mRNA. ACCESSION XM_017137365 VERSION XM_017137365.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137365.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6684 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6684 /gene="Trf4-1" /note="Topoisomerase related function 4-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108054412" CDS 427..3411 /gene="Trf4-1" /codon_start=1 /product="non-canonical poly(A) RNA polymerase protein Trf4-1 isoform X1" /protein_id="XP_016992854.2" /db_xref="GeneID:108054412" /translation="MDPFVGWFQKEQEGPSLRTWLKIWETNAQEMGALLDQQLQQATT TNGSSSSSNNNSSSNNNNNSTTNNIGNNLTGKPYLSRPNSSLNRLLNFRGDSVENGTT QRNSSAADSTTNRDNSSPTNSSSTNGPGTAGGSGGGGGSGSNSPANTAAATTTTGPPA TSNSSSSNSMSDTSNNPPQTTTTTTTTPAASRTNNSIYYNPSRKKRPENKAGGGGHYY MNNHMEMIAKYKGEPWRKPDYPYGEGVIGLHEEIEHFYQYVLPTPCEHAIRNEVVKRI EAVVHSIWPQAVVEIFGSFRTGLFLPTSDIDLVVLGLWEKLPLRTLEFELVSRGIAEA CTVRVLDKASVPIIKLTDRETQVKVDISFNMQSGVQSAELIKKFKRDYPVLGKLVLVL KQFLLLRDLNEVFTGGISSYSLILMCISFLQMHPRGIYHDTANLGVLLLEFFELYGRR FNYMKIGISIKNGGRYMPKDELQRDMVDGHRPSLLCIEDPLTPGNDIGRSSYGVFQVQ QAFKCAYRVLALAVSPLNLLGIDPRVNSILGRIIHITDDVIDYREWIRENFEHLVVVD RISPLPTAPAAYAASNGAPKYVIMPSGAVVQQLYHHPQQVQVQTTAHGGHSHSHHGHL HPLGQPFVTGTAAASGATTTTSSTTVALVGGVAISAGGGVQQQQQLQQQLQQQQQNAT NAHSHAQSQQSQQNQSQSRHRRGSTSSGDDSEDSKDCDVVETTTLTGGQEVIDITLSP PNGLGSSMPVQPSNWSAGGNGNINSSSSSSPENNAAATQEMVDPEMEPDQQQQQQQQQ HHQQHHHQETSGVSSASSSSTGGGSGRNYNQRGNHNSSGYYHQQYYVPPPMQQQQQQQ LSKSNSNSSSSNYHQQHHHSHSNHSHRQQQQQHHHQQQQQHHQQRPQHLRLGGNRYQK SVGGSPTISASNSSSNSSNSSSTSGSNSNNNRLPPLRGTLVNSSSAISIISISSESSI ASSSSSSSRSGQDQQQNERDER" misc_feature 1168..2205 /gene="Trf4-1" /note="DNA polymerase sigma [Replication, recombination and repair]; Region: TRF4; COG5260" /db_xref="CDD:227585" polyA_site 6684 /gene="Trf4-1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cacatccaat tttaggacct tttcctccat tagtcgcgtg ttcgcacaca aattgcaatt 61 ttgctgtcgt ttttaaacta actaaagtta acgggcgttg caaagggaca atcgcggtgg 121 aggagtgcaa tctgcacagg aaatgcaagc ttgcattgcg aggcgcagcc attgcttatg 181 attaatttcg ctcttgaatg ctgaaaaact gaaagagttg aaggcccaag acgataactc 241 cattcccctg tggaacacac agcccacaga tctctaccga tccatataga gaaacatcta 301 tataatatat catattataa taaacgcagg acgcaagggg gaagagagac gaaggaagga 361 cgaagcgaag gaggacgcgc ccctctcgtt tcccgcccag ccaacagccg tgtgaaagcg 421 tcttgaatgg atccatttgt tggctggttt cagaaggaac aggagggacc atcgctgcgc 481 acatggttaa agatttggga gacgaatgcc caggagatgg gcgcattgct tgatcaacag 541 ctacagcagg cgacgacgac caacggcagc agcagcagca gcaacaataa tagcagtagc 601 aacaacaaca acaattctac taccaataat attggtaaca atttaacggg caagccctat 661 ttatcgcgac ccaacagctc gctaaatcga ttgctgaatt tccgcggcga ttctgtagag 721 aacggaacca ctcagcggaa cagttcagcg gctgattcca ccacaaatcg ggataacagc 781 tcacccacca acagcagttc aaccaacgga cccggaacag caggaggatc aggaggagga 841 ggaggaagcg gatccaatag tccggccaac acagctgctg ccaccacaac gactgggcca 901 ccagccacta gcaacagcag cagcagcaac agcatgagtg acactagcaa caacccgcca 961 cagacaacga caacgacaac aaccacgccc gccgccagtc gcacgaacaa cagcatctac 1021 tacaatccgt cgcggaagaa acggcccgag aacaaagcag gcggcggtgg gcattactat 1081 atgaacaacc acatggagat gatagccaaa tacaagggtg aaccgtggcg caagccagac 1141 tatccgtatg gcgagggcgt tattgggctg cacgaggaga tcgagcactt ctatcagtat 1201 gtcctgccca cgccctgcga acatgccatt cggaacgagg tggtcaagcg catcgaggcc 1261 gttgtccatt ccatctggcc acaggcggtg gtcgagatct ttggttcctt tcgcaccggc 1321 ctctttttgc ccacctccga cattgatctc gttgtgctag gtttgtggga gaaactgccg 1381 ctgcgcacgc tggaattcga gctagtgagc cgcggcatcg ccgaggcctg cacagttcgt 1441 gtcctggaca aggcatccgt gcccatcatc aagctgacgg atagggagac gcaagtgaag 1501 gtagacatat cgttcaacat gcagagcggc gttcagtcgg cggagctaat taagaagttc 1561 aagcgcgact atccggtgct ggggaagctg gtgctggtgc tcaagcagtt cctgctgctg 1621 cgcgatctca acgaggtgtt caccggcggc atctcgtcct actcgctgat cctcatgtgc 1681 atcagcttcc tgcagatgca tccgcgtggc atttaccacg ataccgccaa tctgggtgtg 1741 ctgctcctcg agttctttga gctttacggc cgtcgtttca actacatgaa gattgggatc 1801 tcgatcaaga acggcggacg gtatatgccc aaggatgagc tgcagcgcga catggtcgac 1861 ggccatcggc catcgcttct ctgcatcgag gatccgctga cgccgggcaa cgatatcgga 1921 cgcagcagct acggggtctt tcaggtgcag caggccttca agtgcgccta ccgcgtcctc 1981 gccctcgccg ttagtccgct caacctcctc ggcatcgatc cacgggtcaa ttccatactg 2041 ggtcgaatca tccacatcac cgacgacgta atcgactacc gcgaatggat ccgcgagaac 2101 ttcgagcatc tggtggtggt ggaccgcatc tcgccgctgc ccaccgcacc cgctgcgtac 2161 gccgcctcga atggggcgcc caaatatgtg atcatgccct cgggcgccgt tgtccagcag 2221 ctgtaccacc atccgcagca ggtgcaggtg caaaccacag cccacggagg gcatagccat 2281 agccatcacg gccatttgca tccgcttggc cagccgtttg tcaccggaac agctgctgca 2341 tctggggcga caacgacgac gtcgtcgacg acggtggcgt tggttggcgg agtggccatc 2401 tcagccggcg gaggagtcca acagcagcag cagctgcagc aacagcttca gcagcagcaa 2461 cagaatgcca cgaatgccca ttcccatgcg cagtcgcagc agtcgcagca gaaccaatcg 2521 cagtcgcgtc acagacgtgg cagcacctcc tctggcgatg attccgagga cagcaaagac 2581 tgcgatgtgg tcgagacgac gacgttgacg ggcggacagg aggtcatcga tatcacgctg 2641 tcgccgccga atggcctcgg ctcctccatg ccggtgcagc cgagcaattg gagtgccggt 2701 ggcaatggaa acatcaacag cagctcatcc tcgtcgccgg aaaacaacgc cgccgcaacg 2761 caggagatgg tggacccaga gatggaacca gatcagcagc agcagcagca acagcagcag 2821 catcatcagc aacatcacca ccaagagact tccggagtta gtagtgcctc ctcctcctcc 2881 actggaggag gctctggacg caactacaat cagcgcggca accacaattc cagtggctac 2941 taccaccagc agtactacgt gccaccgccg atgcaacagc agcagcagca gcagctgagc 3001 aagtccaatt caaactcctc ctcctccaac tatcaccagc agcaccatca cagccatagc 3061 aaccatagtc accggcagca gcagcagcaa catcaccacc agcaacagca gcagcatcac 3121 cagcagcgac cgcagcattt gcgactgggc ggcaatcgct accagaaatc ggtaggtgga 3181 tcgcccacca tcagtgcatc gaacagcagc agcaacagca gcaacagtag cagcaccagc 3241 gggagcaaca gcaacaacaa tcgactgccg ccgctgcgag ggacgctggt gaactcgtcg 3301 tcggctatat caatcatttc catatcctca gaatcatcca ttgccagcag cagcagcagc 3361 tcctcgcgat ccggtcagga tcagcagcag aacgagcggg atgagcgata ggattaggct 3421 gtaggatgta ggatgtagga tctaggatct aggctacagg aagagattgt gaatgagaga 3481 gagaaagaga tagttacgag ttagcaatat ttatggatta tatttctttc tcaggttaac 3541 tgcaaactat gctgcatttt tctaattaat attcctgctc ctgctcctca cttcctgcct 3601 tcacctcctc caaatcccac aacaaactaa tgtttagact ttattttaca ttgctgtctc 3661 gcttaaatta gaagagcgaa ggaaacctat taagcttaat attaggaact ttgcctctga 3721 tttcgctaaa tgtatttcat tttgtttcta aaataaacat gaaagcaaac aacaacaaaa 3781 aaaacaagaa agcaaaaaaa aaaatatata tatagatata tattagataa aaacggtata 3841 aatataaatg taaactcata attagattgt aatggtttaa aagagcgata aactgaagta 3901 tgaaattagc tgctaacata tttaaggtcc gcaaacatat gtttctaaat ctctctagag 3961 ctccaacccc cccgcatcca atgtagtttc cctaaaggct ctacgtttca agcaaatgtt 4021 ttgtaaacta aaaatccaac ccgcactccc taaaaaaaaa aacaaaaaac gaaaatactg 4081 cgcgcaattc ttacgctaat attactaagt gaatttgcgc gcaaattgta aaaaaaaaaa 4141 gtaacatata tatacgaaaa gctaaaaatc ccatttttcc taccatcttc ctcgtaacct 4201 aacctactca taaacttctt ctattttact tcaagttaat tttatgcctg aaatgtatat 4261 gtttttatga ttatgattat gcttaccatt attactattt tgattacgat gcttattatt 4321 agtttttata actaagctca gaggataacg agccaactaa aattgtaatt aaacacattg 4381 ctcagaccta aaaagcaact ctacttttaa gcagaaacaa acaaaaaaaa accaacacaa 4441 aaacgacaaa aaaaaaacaa aaacctacaa caacaagaaa cgcatctttt gtttaaactt 4501 actgtacgtt tagttgatta ttatgattat gcaatgttgt gcatttcgca tagattcctg 4561 ccatttgttt tgtatagttc acaaagctct gtaaatactt agttaccgcc ccccgccccg 4621 cccactgtga cacccccacc cgctcccgcc ccctctaaac gcactgccat tttgagaaag 4681 gtttttaaaa aacacgtcga aaaggagcta gcagaaaaaa aagagtagaa aagaacattt 4741 agactttgta catgtataac attttaggct gttcttcttt ccatttgtaa gagaaaacaa 4801 agaaagcaaa acaaaaataa taccaaacaa gaaacaaaag caaaagctaa agcaaaaacc 4861 gaactaattg taaaatcact taaatagtct acgaatatgt ttgtcaatcg ttttgtacgc 4921 gagtctggag tatagagatc aatttcggat ctgtaatgct aggcagcaaa attttttaat 4981 gttcatttga gagtaccact tccttttccg attcatatga gatcgtaaat gacaaaaaaa 5041 aaaggagacg tctttaaaat gtatatatca aaacatgttg caatatttta atattgatta 5101 cttttgttgg gtgtgattgt gttttttttt gttttttgta tcgtgtaaac cagatgtaaa 5161 cagaatttgt taattctcct attaattaat tttaatatta aaaaatagtt ttcactttcg 5221 ctttttttta aattcctttc taaacatggt tgtaaaaagg cttgttttcg aataatgagc 5281 taagagttga aatatcgaaa gaggttgaaa accttaatga agatgaattt cgttgacgaa 5341 tcgatcaata tactaagcaa aagtgttcta aataatttaa gttattcatt gaaaaacgcg 5401 tttcttaaag tcatttagga acctcaatgg tttggaaaac atgaagttcg gtacaatatc 5461 ttttttttat gttgccttgt gtgaataaag ctatgtccag tgttggcaaa ggccgaaggt 5521 gctctctccc tttcgcacga tgactcctac aagcttgcag ctgagctatg aagcccacct 5581 tacacacact ttctcgctca cccacatcac aaacatacac acacaggcgc ataagcactc 5641 acacagacac ccagcccaaa cagagaggga cacataacgg taaagatagc atagaaattt 5701 gaaaaaatcg tgaagagaag gcaaggagcc gtaagtgaga atgagatagc gatagagcga 5761 gagagggagt aatcgtataa gaattattaa atttatgcac tcgtctgttg aatatttata 5821 tgaattatat gtatgtagtt actaatatta actaattgat aaatatacaa tatttatatg 5881 cataacttgt ggattaatgt ggacaaacaa atgtttagaa ttagcgattt agccacgtaa 5941 gactcgtaaa tcgtaaatcg taaatcgaaa actacttaga ctacataact gtgtaccaga 6001 gcatatgtaa gcactcccac acacacacac aagaagaaat acatcacagc cacaacacaa 6061 ctcacgcata atcgctatga atgttgaggt tatgtcgtag atttttcaat atcgatcact 6121 gttcgcttag cctagcaagt aagccgaaga actaactgta aaactaactc atttctttac 6181 tggattccat gcgtctcgtc cttttcccct tatccattgt ccctcggttt tcgttttggg 6241 ctatcgtttc gattttatga ttcccatcca aaccaaacag atccaatcca atccccaatc 6301 ccaaacacca ttctaattat tctattcgca tttgctcttc cttccttcca taatacgcat 6361 atgtcctgtg tgccgttgtt gttatatata cacaagcata tactcgaaaa aaaacatttt 6421 tttgtcgtcg cgatattaga gggtattaat aaattaaatt aaatttaatt aactacattt 6481 aacgcaacta aattcaattc aagtgaatca aatgaatcga tcgatacatg tatatgatag 6541 agttcaatag ctgtgtaaga atcggaatcg taacaattta gtatgcaaaa atcgtaaatc 6601 taactgattg tataattagc gaaaagagaa aacggaagcg ataagcaaaa cgatgcgaca 6661 aataaaagcc ggcaaaaact aaaa