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LOCUS XM_017137154 6486 bp mRNA linear INV 09-DEC-2024 (LOC108054274), mRNA. ACCESSION XM_017137154 VERSION XM_017137154.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; includes ab initio. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017137154.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..6486 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6486 /gene="LOC108054274" /note="uncharacterized LOC108054274; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054274" CDS 957..5507 /gene="LOC108054274" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_016992643.2" /db_xref="GeneID:108054274" /translation="MSSPLLWAVLLLTTALSSGGWAAPTVVLGGAAAVGQKPSQSHHH YHHGYLEIGVQGNTPTLMEASTTRGAKQAPLGTSTTTSTTSTTTTEMPRATDEIQVTK TVPTAEVTTAVSTTENRTTQGSTTESSSITEKSKETSETLRRTTESSTTKGSTTEGST TQGSTTQESTTEGSTTQRSTTERSTTEKKTTKSSTTTETLALVNSPTAPPNAEESQVV QLLDLEHTVAPPLDSGHDGLKLTKKKQLQQQHFPSTTTVVSSTLETEMERIPTTTTTT RAAPPPTPLLPVHNGYLGPIFMGEKTFSVVHPLKKPQPANHQHVASIESQLRNGRLVE ILAPTSLLEASTTQAPPREVGPPSSAVLSTTVFQVPELQTSTTRLPTSNNLMVGGAER TESKISDIQIEVYDSTVDSIVASTNFRDSEGFYAPAPPPPPPPEMETTRPSHEMMMSL PQERFTQYVIDRADVSTQPASGGGSGGGSSGGATLGKPEPAAIEIHINVSEAFGSESE DLEFSYRQPEKQKNGDEILVVEIIDSGADNSSSSESSASSSSSSSSSSSGEHINPIFT FRNSDAAAAPPPPVRPPQSAVQDADELFMADLKDGGGAVPRPPPPPPPPPPRKPSIDR DSDTIFYISNTEVKVGESLPTAVVPVVQGEQQQQRKFLQLENQFFPASYVMDQKQPQQ QQADEDIILSPLHHNADGLKIFRSSSSSSGDGAPPLDVTYVGESVIEVEQQQPQSWSS TMQPHQQDIIIQPAVLPDLAIGVPVIGELPPQIELKEIDYMPGELGMGMGIYENDIQS NSIDSEPDVIESSIQYGGDLIDDGAGGGFDGVEGSYPFESPAHRQLQVGGGNGGIHGM SRLPHRQAANHLHREQLPSAEMVNATLLQRYDSGSGSGSGSGSGSGSGAASAMAPLLA SGGGRSANATALSEDPLADYDGFFNLFAVSMGLIIVILPSALLVSMYCAIKYVLGKNT GAGTGGAPGDDSEQGQDSKHESESSSFSSSGSAFAFGRATLPPTEPHPHPQPHHHPPP TATPPSGGSQGRLLMAGLESLAFRFETKGEVGEKGEVAQVGGGASSFAPPCGSVTKMT LKDNHLIVVTEERHDISRNARETKMHTDKDGVFVVEVARGIDSKQLPAGDHTGVILDS TELPFDNGKLAPNGGHLLDKSLPPSHEQVQIHAPPQDCCPTTAAAAAAPLHLIEEAEE QVADEPVEEPSNPALTGLSQSDLSSTSSSDSNKRYSYGNQELYVIEQPGYATSSPTAK PILISPNVNLDQNLKTQLSISPEQTEMGDSSQGSKKSDEEALPEKETEVLPEKEKEVE VQSPPEKLVAPEIMTEMPVKDEEEVPAKEEVLPPAVEVSPPKEEPKDPIDTPEEQAES KPDSEPEKPIESQPETEAESNYDSLMSLPAPPSTEEIKELGDYTLMESNQLDSLPPPP PPLLEAPSAPAAIVVGKMGSTTTTTTATGTTTTTGGEPATLTPPASPPATPPPSQTST QFVSNGLTNGIHALAAVDVNGS" misc_feature 1257..>1634 /gene="LOC108054274" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature <4848..>5204 /gene="LOC108054274" /note="DNA polymerase III subunit gamma/tau; Region: PRK12323; cl46901" /db_xref="CDD:481241" ORIGIN 1 ttcggagcaa taggatgcag cagcagtagc agcagtgaaa tcagagtccg ccgaagaatc 61 agcttcatca gcgggttaaa tttctagaaa ggagtttgtc cccagtgctt gaactattta 121 aaaagcatat aaactcaagt taagtgaatg gaaaaccaaa ataaaaacag ttttaagtga 181 ctcgagggaa tccactaacc aagagaaaag tgtgaaaagt tgggggaatt attttgggct 241 ctgcaaggac ccttggatta ccttgcgggg cgagcggaat cgggagatat aatttcgccg 301 gcggatgcat tggagcgacc gaaaggaatc gaaggaggct gccgcaagga gatattgcag 361 ctgcaacatt gcggccaaag gaggagatta aagcgggttt tttcccttgg gcagtgcata 421 ttttttgaag ccaacaaaga agcagcgact gaagcggcga tgctgccgca gaaaatggcc 481 gcagcgacaa cagcaacatc cacgagtgca gcggcgataa caatagcaac agtaacagca 541 acatcgacaa cagcaacatg aatgcgacct gcagcagatg cagcagcaac atggcgcgat 601 gatgatgatg atgaggcaga cgaagacgct caagcgaatg acgatgatga tgacgacatt 661 gccgagttgc agtttcaaga gccacaacac aatgccaagt gccagcaaca agctgagcga 721 agggggaaat taagtgccaa aggcaaccgc agcaacacag cagcaacagc agcaacagca 781 gcaacagcag cagcaacaca acagcagcaa cagcaacagc aacagcgaaa agatttttcg 841 ccagccaagc agaatcaaaa ctaaatttac ataacaaaac aggagcagcc aaaacagaag 901 tggaaaaacc cttgaagaat ctcccttttc catttcccag cagcagcagc agcaacatgt 961 cgtctccact cctctgggcg gtgctcctgc taaccaccgc actgagcagt ggtggctggg 1021 cggcgcccac agtcgtcctc ggtggtgcag cggcagtggg gcaaaagcca tcccagtcgc 1081 accaccatta ccaccatggt tatctggaga tcggagtgca gggcaacacg cccactttga 1141 tggaggccag caccaccagg ggcgccaagc aggcaccact gggcactagc accaccacca 1201 gcaccactag caccaccacc accgaaatgc caagagccac tgatgaaatt caggtgacca 1261 aaacagtgcc aacagctgaa gtaacaactg cagtcagcac cactgagaac agaaccactc 1321 aagggagcac cactgaaagt agcagcatca ctgagaaatc aaaggaaacc agtgaaacac 1381 taagaagaac cactgaaagt agcactacta aaggaagcac cactgaggga agcaccactc 1441 agggaagcac cactcaggaa agcaccactg aaggaagcac cactcagaga agcaccactg 1501 aaagaagcac cactgagaaa aaaaccacta aaagtagcac caccactgaa accctcgctt 1561 tagtcaacag cccaactgca ccaccgaacg ccgaagaatc gcaggtggtg cagctgctgg 1621 acctcgagca cacggtggct ccaccactcg acagcggtca cgatggcctc aagctgacca 1681 agaagaagca gctgcagcag cagcacttcc ccagcaccac cacggtggtt agcagcaccc 1741 ttgaaacgga aatggaaagg atacccacca ccaccaccac taccagggct gcaccaccac 1801 ccactcccct gctgcccgtt cacaatggct acctgggacc gatcttcatg ggcgagaaga 1861 ccttcagtgt ggtgcatccg ctgaagaagc cgcagccggc gaaccaccag catgtggctt 1921 ctatagagag tcaattgcgc aatggccgcc tggtggagat tctggcgccc acgtcactgc 1981 tcgaggccag caccacccag gcaccaccac gggaagtagg acccccctcc tcagcggtgc 2041 tctccaccac cgtgttccag gtgcccgagc tgcagaccag caccacccgt ctgcccacca 2101 gcaataacct gatggtcggt ggtgcagagc gcaccgaatc caagatctcc gacattcaga 2161 tcgaggtcta cgactccacg gtggactcca ttgtggcctc gacgaatttc cgcgacagcg 2221 agggcttcta tgcgcctgca ccaccgccac caccaccgcc ggaaatggaa accacccggc 2281 cgtcgcacga gatgatgatg tcgctgcccc aggagcgatt cacccagtac gtgatcgatc 2341 gggcggatgt gtccacccag ccggcatcgg gtggtggttc cggtggtggt tcatcgggtg 2401 gtgcaactct gggcaaaccc gagccggcgg ccatcgagat acacatcaat gtttccgagg 2461 cctttggcag cgagagcgag gatctggagt tctcctatcg ccagccggag aaacagaaga 2521 acggcgacga gattctggtg gtggagatca tcgacagtgg tgcggacaac agcagcagct 2581 ccgaatcttc cgcttcttcc tcctcctcct cctcctcctc ttcgagtggc gagcacatca 2641 atccgatttt cacattccgc aactcggatg cggcggctgc accaccgcca ccagtgcgac 2701 cacctcaatc cgccgtccag gatgccgacg agctcttcat ggccgatctc aaggacggtg 2761 gtggtgcagt gccacgccca ccgccgccac caccaccgcc gccaccgcga aagccgagca 2821 tcgatcgcga ttcggatacg atcttctaca tctcgaacac cgaggtcaag gtgggtgagt 2881 cgctgcccac ggcggtggtg ccggtggtgc agggcgagca gcagcagcag cgcaagttcc 2941 tgcagctgga gaaccagttc ttccccgcca gctacgtgat ggatcagaag cagccgcagc 3001 agcagcaggc ggatgaggac atcatcctgt cgccgctgca ccacaatgcc gatggtctga 3061 agatcttccg cagcagttcc tcctcctcgg gcgacggagc accacctctg gacgtgacct 3121 atgtgggtga gtcggtgatc gaggtggagc agcagcagcc gcaaagctgg agcagcacga 3181 tgcagccaca tcagcaggac atcatcatcc agccggcggt gctgcccgat ttggccatcg 3241 gagtgccggt gatcggtgag ctgccgccgc agatcgagct caaggagatc gactacatgc 3301 ccggggaact cggaatggga atgggcatct acgagaacga catccagagc aacagcatcg 3361 acagcgagcc ggatgtgatc gagagctcca ttcagtacgg cggtgatttg attgacgatg 3421 gagccggcgg aggtttcgat ggcgtcgagg gctcctatcc cttcgagagt ccagcgcatc 3481 gacagctgca ggtgggcggt gggaacggtg gtattcacgg aatgagccgc ctgccccacc 3541 gccaggcggc caaccacttg caccgcgaac agctgccctc ggcggagatg gtcaatgcca 3601 cgctgctcca gcgatatgat agtggttctg gttcaggatc gggatccgga tcgggttcgg 3661 gatcgggagc tgcctcggcc atggctccct tgctggccag cggaggtggg aggagcgcca 3721 atgccaccgc tctctcggag gatcctctcg ccgactatga cggattcttc aatctatttg 3781 ccgtttccat gggtctcatc atcgtcatcc tgccctctgc cctgctggtg tccatgtact 3841 gcgctataaa gtatgtgctt ggcaagaaca caggagcggg cacgggtggc gccccaggcg 3901 atgacagcga acagggacag gactccaagc acgagtcaga atcgtcgtca ttctcatcat 3961 ctggctcggc atttgcattt ggcagagcca ccttgccacc gacagaacca caccctcacc 4021 cacagccaca ccaccaccca ccgcccacag ccacgccccc aagtggcggc agtcaaggcc 4081 gtttactgat ggctggtctg gaaagcctcg cgtttcgatt cgaaacgaaa ggcgaggtgg 4141 gtgagaaagg ggaggtggct caggtgggtg gtggtgcctc ctcctttgct cctccctgcg 4201 gctccgtcac caagatgacg ctcaaagata atcatctgat tgttgtcacc gaggagcggc 4261 acgacatctc gaggaatgcc cgcgagacga aaatgcacac ggacaaggat ggcgtctttg 4321 tggtggaggt ggcccgcggc attgactcca aacaacttcc cgcaggcgat cataccggcg 4381 tcatcttgga ctccaccgaa ctgcccttcg acaacggaaa gttggcgccc aacggggggc 4441 atttgctcga taagagcctg ccgcccagcc acgaacaggt gcagatccat gcgccgcccc 4501 aggactgctg ccccaccacc gctgccgccg ccgccgctcc acttcatctc atcgaggagg 4561 ccgaggagca ggtggccgac gagccggtcg aggaaccctc caatcccgcc ctcaccggcc 4621 tctcgcaatc ggatctcagc tccacctcgt cgagcgactc caacaagcgc tactcgtacg 4681 gcaaccagga gctctatgtc atcgagcagc cgggctatgc caccagttcg cccacagcca 4741 agcccatatt gataagtccg aatgtgaatc tagatcagaa cctcaagacg cagttgtcca 4801 ttagcccgga acaaacggag atgggagatt cgagccaggg ttccaagaag tctgatgaag 4861 aggcattgcc cgagaaagaa accgaggttc ttccggaaaa ggaaaaagaa gtagaggtac 4921 agtcaccgcc agaaaagtta gttgccccgg aaattatgac agagatgcca gtcaaagatg 4981 aggaagaagt tcccgccaaa gaggaagtgc tgccgccagc agtcgaagtc tcaccgccaa 5041 aggaagagcc gaaggatccc atagataccc ccgaggaaca agccgaatca aaaccagact 5101 ccgaaccgga aaagcccatt gaatcccagc cagagaccga ggcggagagc aactacgaca 5161 gcctgatgag cctgccggcg ccaccatcca cggaggagat caaggagctg ggcgactaca 5221 cgctcatgga gtccaaccag ttggacagcc tgccgccgcc accaccgccg ctcctcgagg 5281 cgcccagtgc gccggcggcc attgtggttg gcaagatggg cagcaccacc accaccacca 5341 ccgccacggg aaccaccacc accactgggg gtgagccggc caccctgaca ccacccgcct 5401 cgccgcccgc caccccaccg ccctcgcaga catcgacgca gttcgtcagc aatgggctaa 5461 ccaatggcat ccacgctttg gccgccgtcg atgtgaatgg cagttaagag aagaaacagt 5521 tacgggatgg taagagattt tttttcatcg gatctcatag agatcgtggg gagatcgcgg 5581 agatcgtagg gttaaggatt actaggagta ctgataccag aaaacccaag aaaaaaaata 5641 actgtggcaa aaaacgttct caagcaaaac ttaaatttaa atatacacta aatagagaga 5701 aactttttcc acttactgtt tgttgatttt cgaatataac gaataacgag taataacaat 5761 taaatgcgat taatataaat atataaatat aaatcataat taattgtttg tctatttgcg 5821 gctggcggcc tctcccccca ccaaccatcc acccaccacc cactgtccac ccacagccac 5881 ccactttgac ccacttccct ctccatttcg gggggaggtg cggctaacga gtatttcaat 5941 gtctataact acaataaagc tagagcaaaa aaaatgaacg agaataaaat acaaatacga 6001 tagaatctgc atacaaaaaa tacatataat ataatgcaag aaatgcgata cacgtgggca 6061 aacaaaaaag agagagtaac taccgatatg taacgatgca taattaatta ggctaattat 6121 ttacacacac aacagcgcca aaattgaaaa acagagagca gagaacagca accgcataaa 6181 gggcataatt gtagtgaagt tatttgggtt cgattggcca gttcgtggac agccaatagc 6241 atctaagtgt gtcctgtgtc cggaggatcc ccgtcgagga ttagtgtata gggttttaat 6301 tagcagcgat ccggagggaa gtccgagttg gtttcaaagg catcaattgc tgttaagagg 6361 gattgtgttt aagtggattt ccgatgaaaa tgatttaatt aatactggta aagtgccaaa 6421 gaaatgacta aatttgaaaa tcaccaaaaa ggtgactaaa agtatgcagc aatatatttt 6481 caggcc