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LOCUS XM_013263606 2933 bp mRNA linear INV 02-SEP-2023 (LOC106096063), transcript variant X2, mRNA. ACCESSION XM_013263606 VERSION XM_013263606.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013263606.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2933 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2933 /gene="LOC106096063" /note="vesicle-fusing ATPase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106096063" CDS 335..2569 /gene="LOC106096063" /codon_start=1 /product="vesicle-fusing ATPase 1" /protein_id="XP_013119060.1" /db_xref="GeneID:106096063" /translation="MSYRMKATKCPTDELSLTNKAIVNVNDFPDDVKYADISPGPGQH YIFALERTAEVPRGHIGFSLVQRKWATLSINQDIDIRPYRFDGHSDVITMVSFETDFL QKKITSQEPYDSDLMAKDFLMQFGGMALTVGQTLVFSFQDKKLLGLAVKTLEAIDPKA LGEGKEAATRSVRFGRITGNTIVQFEKAENSSLNLQGKSKGKIVRQSIINPDWDFGKM GIGGLDKEFNAIFRRAFASRVIPPEIIEQLGCKHVKGILLYGPPGTGKTLMARQIGTM LNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAIC KQRGSVAGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDDALLRPGRLEVQ MEISLPNEQGRCQILNIHTKRMRDFNKIAADVDCKELAASTKNFSGAELEGLVRAAQS TAMNRLIKADAKVTVDPEAMEKLKVTRADFFHALENDIKPAFGTAMEVLETMLTRGII NWGQPVSHILEDGMLYVQQARATESSGLVSVLIEGPPNSGKTALAAKLAQMSDFPFVK VCSPEDMVGYTESAKCLHIRKIFDDAYRSMLSCIVVDNVERLLDYGPIGPRYSNLTLQ ALLVLLKKQPPKGRKLLILVTSSRREVLEEMEMLTAFTSVLHVPNISLPEHVVAVLED CDIFSKGELQAIGKKMAGKRVFIGIKKLLALIDMIRQTEPQHRAIKFLSKMEEEGGLD MAKH" misc_feature 347..583 /gene="LOC106096063" /note="Cell division protein 48 (CDC48) N-terminal domain; Region: CDC48_N; smart01073" /db_xref="CDD:215012" misc_feature 665..>808 /gene="LOC106096063" /note="Cell division protein 48 (CDC48) domain 2; Region: CDC48_2; smart01072" /db_xref="CDD:215011" misc_feature 989..1519 /gene="LOC106096063" /note="first of two ATPase domains of NSF and SEC18, and similar ATPase domains; Region: RecA-like_NSF-SEC18_r1-like; cd19504" /db_xref="CDD:410912" misc_feature <992..>2152 /gene="LOC106096063" /note="AAA family ATPase, CDC48 subfamily; Region: CDC48; TIGR01243" /db_xref="CDD:273521" misc_feature order(995..997,1124..1138,1316..1318) /gene="LOC106096063" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:410912" misc_feature order(1031..1033,1040..1042,1052..1054,1070..1084, 1217..1222,1229..1231,1241..1243,1388..1393,1400..1402, 1412..1417,1490..1492) /gene="LOC106096063" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:410912" polyA_site 2933 /gene="LOC106096063" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttcgggttct gagctgaaaa tgtgagcctg cctaggtttc aagtttgcta aagtttgcag 61 tccgttcaat catcaaagtg aaaagtctcc accaccccca ccaccagaaa ggaataagga 121 aaacacccct ttttggccaa agagggtggc taataaacaa caaccactga atagtaaaca 181 gagagcaagt tatacgtggt gtagtaaaag agagcagcac gagagagaga gagagaggct 241 aaaaacaaaa cagctgttta agttattttt gtttatttcg caagtagaca aatttattga 301 atcagagtgt gttgaatatt aaatcagcag caacatgtcc tatcgtatga aagcaacaaa 361 atgtcccaca gatgagctgt cgctgacgaa caaggccatc gtcaacgtta acgattttcc 421 ggatgatgtt aagtatgcgg atatttctcc gggacctggg cagcattaca tctttgcctt 481 agagcgcacg gcagaagtgc cacgcggtca tattggattc tccttggttc agcgcaagtg 541 ggccacactt tctatcaatc aagatattga catacgtcca tatcgctttg atggccattc 601 agatgttatt accatggtct cattcgagac tgatttcttg caaaagaaaa taacttccca 661 agagccttac gactccgatt taatggctaa ggatttctta atgcaatttg gtggcatggc 721 cttaaccgtt ggccaaacgc tggtttttag cttccaagac aagaagcttt tgggtttagc 781 agtcaaaact ctcgaggcta ttgacccaaa ggctctaggc gaaggcaagg aagcagccac 841 ccgttctgtg cgattcggac gcattactgg caacaccatt gttcagtttg agaaagctga 901 aaattcttct ttaaatctac aaggcaaatc caagggtaaa attgtaagac agtcgattat 961 aaacccagat tgggatttcg gcaaaatggg tattggtggt ttggataagg agttcaatgc 1021 catctttcga cgtgcatttg cttctcgagt cattccacca gaaattattg agcaattggg 1081 ctgtaaacac gttaagggta ttctattgta tggtccacct ggtaccggca aaacattgat 1141 ggcccgtcaa attggcacca tgttaaatgc cagggagcct aaaattgtaa atggtccaca 1201 gattttggat aaatatgttg gtgagtcaga agccaacatt cgtcgcttat tcgctgaggc 1261 cgaagaagaa gaaaagaggc ttggccccaa cagtggttta cacataatta tttttgacga 1321 aatcgatgca atttgcaagc aacgtggttc tgttgctggc aacagtggtg ttcatgatac 1381 cgtggtcaat cagttgttgg ccaagattga tggtgtcgag caattgaata atattctagt 1441 cattggtatg accaatcgtc gtgacatgat tgacgatgcc ttactgcgtc ctggtcgttt 1501 ggaagttcaa atggaaatca gtttgcccaa tgagcagggt cgttgtcaaa ttctaaatat 1561 ccatactaaa cgtatgcgtg atttcaataa gattgctgca gatgtagatt gcaaagaact 1621 tgctgcctcc accaagaatt tcagtggagc tgaattggag ggtttggtgc gtgctgccca 1681 atctactgct atgaatcgtc taattaaagc cgatgccaaa gtaactgttg acccagaggc 1741 tatggaaaaa ctgaaagtta cacgtgctga tttcttccat gctttagaaa atgatataaa 1801 gccagctttt ggcactgcta tggaagtttt ggaaactatg ctgaccagag gtattattaa 1861 ctggggacaa cctgtgtctc acattctgga ggatggcatg ttgtatgttc aacaagccag 1921 agctaccgag agctctggtc tagtatcagt attgattgag ggtcctccca attcgggtaa 1981 aactgctctg gccgcaaaat tggctcaaat gtccgacttt ccatttgtta aagtatgctc 2041 gcctgaagat atggtgggct atacagagtc ggccaagtgt ttacacattc gaaagatttt 2101 cgacgatgct taccgctcta tgttaagttg tattgttgtt gataatgttg aacgtctatt 2161 ggactatggt ccaattgggc cacgttattc caatttgaca ttgcaagcat tattggtgtt 2221 acttaagaaa cagcctccta agggtcgtaa attacttata ttggttactt ccagccgacg 2281 ggaagtcctg gaggaaatgg aaatgttgac tgcattcaca tctgttctac atgtacctaa 2341 catatctctt cctgaacatg ttgttgctgt tttggaggat tgcgatatat tcagcaaggg 2401 cgagttacaa gctattggca aaaagatggc tggcaagaga gtttttattg gcattaaaaa 2461 actgttggcc cttattgata tgataaggca aaccgagccc cagcacaggg ctattaaatt 2521 cttatcgaaa atggaagaag agggtggttt ggatatggcg aaacactaac tacaacgtac 2581 aagtttcaac atgtccgtgg tggagctcaa cgatgttttc taaagtatga ttacctattt 2641 aaatttattg taagttaaaa agacagacaa cagatataca taatgaaatc tatttaacaa 2701 aatatcttca ctatctatct atctacctat cataaacaac gctactaaca aacaaaatat 2761 atagaattat atatatatat attacaacac caacagacat acaacatata ttgactcgaa 2821 caagctagaa gatggattga tttgaaaagt tgagctaaaa caattgttgc taaatattaa 2881 gaagaaaaaa acaaatatac aatacactta cacttaattc agagaatatc cta