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LOCUS XM_013263605 2992 bp mRNA linear INV 02-SEP-2023 (LOC106096063), transcript variant X1, mRNA. ACCESSION XM_013263605 VERSION XM_013263605.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013263605.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2992 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2992 /gene="LOC106096063" /note="vesicle-fusing ATPase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106096063" CDS 394..2628 /gene="LOC106096063" /codon_start=1 /product="vesicle-fusing ATPase 1" /protein_id="XP_013119059.1" /db_xref="GeneID:106096063" /translation="MSYRMKATKCPTDELSLTNKAIVNVNDFPDDVKYADISPGPGQH YIFALERTAEVPRGHIGFSLVQRKWATLSINQDIDIRPYRFDGHSDVITMVSFETDFL QKKITSQEPYDSDLMAKDFLMQFGGMALTVGQTLVFSFQDKKLLGLAVKTLEAIDPKA LGEGKEAATRSVRFGRITGNTIVQFEKAENSSLNLQGKSKGKIVRQSIINPDWDFGKM GIGGLDKEFNAIFRRAFASRVIPPEIIEQLGCKHVKGILLYGPPGTGKTLMARQIGTM LNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAIC KQRGSVAGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDDALLRPGRLEVQ MEISLPNEQGRCQILNIHTKRMRDFNKIAADVDCKELAASTKNFSGAELEGLVRAAQS TAMNRLIKADAKVTVDPEAMEKLKVTRADFFHALENDIKPAFGTAMEVLETMLTRGII NWGQPVSHILEDGMLYVQQARATESSGLVSVLIEGPPNSGKTALAAKLAQMSDFPFVK VCSPEDMVGYTESAKCLHIRKIFDDAYRSMLSCIVVDNVERLLDYGPIGPRYSNLTLQ ALLVLLKKQPPKGRKLLILVTSSRREVLEEMEMLTAFTSVLHVPNISLPEHVVAVLED CDIFSKGELQAIGKKMAGKRVFIGIKKLLALIDMIRQTEPQHRAIKFLSKMEEEGGLD MAKH" misc_feature 406..642 /gene="LOC106096063" /note="Cell division protein 48 (CDC48) N-terminal domain; Region: CDC48_N; smart01073" /db_xref="CDD:215012" misc_feature 724..>867 /gene="LOC106096063" /note="Cell division protein 48 (CDC48) domain 2; Region: CDC48_2; smart01072" /db_xref="CDD:215011" misc_feature 1048..1578 /gene="LOC106096063" /note="first of two ATPase domains of NSF and SEC18, and similar ATPase domains; Region: RecA-like_NSF-SEC18_r1-like; cd19504" /db_xref="CDD:410912" misc_feature <1051..>2211 /gene="LOC106096063" /note="AAA family ATPase, CDC48 subfamily; Region: CDC48; TIGR01243" /db_xref="CDD:273521" misc_feature order(1054..1056,1183..1197,1375..1377) /gene="LOC106096063" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:410912" misc_feature order(1090..1092,1099..1101,1111..1113,1129..1143, 1276..1281,1288..1290,1300..1302,1447..1452,1459..1461, 1471..1476,1549..1551) /gene="LOC106096063" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:410912" polyA_site 2992 /gene="LOC106096063" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctaaagtttg cagtccgttc aatcatcaaa gtgaaaagtg taagttgaaa gctacggaat 61 ttttcatcaa tctttagaaa ggcaaaaaaa aacccaaaaa attactgtga aaaaaactac 121 aaaatcttcc gaaaaaacag aaaagctcca ccacccccac caccagaaag gaataaggaa 181 aacacccctt tttggccaaa gagggtggct aataaacaac aaccactgaa tagtaaacag 241 agagcaagtt atacgtggtg tagtaaaaga gagcagcacg agagagagag agagaggcta 301 aaaacaaaac agctgtttaa gttatttttg tttatttcgc aagtagacaa atttattgaa 361 tcagagtgtg ttgaatatta aatcagcagc aacatgtcct atcgtatgaa agcaacaaaa 421 tgtcccacag atgagctgtc gctgacgaac aaggccatcg tcaacgttaa cgattttccg 481 gatgatgtta agtatgcgga tatttctccg ggacctgggc agcattacat ctttgcctta 541 gagcgcacgg cagaagtgcc acgcggtcat attggattct ccttggttca gcgcaagtgg 601 gccacacttt ctatcaatca agatattgac atacgtccat atcgctttga tggccattca 661 gatgttatta ccatggtctc attcgagact gatttcttgc aaaagaaaat aacttcccaa 721 gagccttacg actccgattt aatggctaag gatttcttaa tgcaatttgg tggcatggcc 781 ttaaccgttg gccaaacgct ggtttttagc ttccaagaca agaagctttt gggtttagca 841 gtcaaaactc tcgaggctat tgacccaaag gctctaggcg aaggcaagga agcagccacc 901 cgttctgtgc gattcggacg cattactggc aacaccattg ttcagtttga gaaagctgaa 961 aattcttctt taaatctaca aggcaaatcc aagggtaaaa ttgtaagaca gtcgattata 1021 aacccagatt gggatttcgg caaaatgggt attggtggtt tggataagga gttcaatgcc 1081 atctttcgac gtgcatttgc ttctcgagtc attccaccag aaattattga gcaattgggc 1141 tgtaaacacg ttaagggtat tctattgtat ggtccacctg gtaccggcaa aacattgatg 1201 gcccgtcaaa ttggcaccat gttaaatgcc agggagccta aaattgtaaa tggtccacag 1261 attttggata aatatgttgg tgagtcagaa gccaacattc gtcgcttatt cgctgaggcc 1321 gaagaagaag aaaagaggct tggccccaac agtggtttac acataattat ttttgacgaa 1381 atcgatgcaa tttgcaagca acgtggttct gttgctggca acagtggtgt tcatgatacc 1441 gtggtcaatc agttgttggc caagattgat ggtgtcgagc aattgaataa tattctagtc 1501 attggtatga ccaatcgtcg tgacatgatt gacgatgcct tactgcgtcc tggtcgtttg 1561 gaagttcaaa tggaaatcag tttgcccaat gagcagggtc gttgtcaaat tctaaatatc 1621 catactaaac gtatgcgtga tttcaataag attgctgcag atgtagattg caaagaactt 1681 gctgcctcca ccaagaattt cagtggagct gaattggagg gtttggtgcg tgctgcccaa 1741 tctactgcta tgaatcgtct aattaaagcc gatgccaaag taactgttga cccagaggct 1801 atggaaaaac tgaaagttac acgtgctgat ttcttccatg ctttagaaaa tgatataaag 1861 ccagcttttg gcactgctat ggaagttttg gaaactatgc tgaccagagg tattattaac 1921 tggggacaac ctgtgtctca cattctggag gatggcatgt tgtatgttca acaagccaga 1981 gctaccgaga gctctggtct agtatcagta ttgattgagg gtcctcccaa ttcgggtaaa 2041 actgctctgg ccgcaaaatt ggctcaaatg tccgactttc catttgttaa agtatgctcg 2101 cctgaagata tggtgggcta tacagagtcg gccaagtgtt tacacattcg aaagattttc 2161 gacgatgctt accgctctat gttaagttgt attgttgttg ataatgttga acgtctattg 2221 gactatggtc caattgggcc acgttattcc aatttgacat tgcaagcatt attggtgtta 2281 cttaagaaac agcctcctaa gggtcgtaaa ttacttatat tggttacttc cagccgacgg 2341 gaagtcctgg aggaaatgga aatgttgact gcattcacat ctgttctaca tgtacctaac 2401 atatctcttc ctgaacatgt tgttgctgtt ttggaggatt gcgatatatt cagcaagggc 2461 gagttacaag ctattggcaa aaagatggct ggcaagagag tttttattgg cattaaaaaa 2521 ctgttggccc ttattgatat gataaggcaa accgagcccc agcacagggc tattaaattc 2581 ttatcgaaaa tggaagaaga gggtggtttg gatatggcga aacactaact acaacgtaca 2641 agtttcaaca tgtccgtggt ggagctcaac gatgttttct aaagtatgat tacctattta 2701 aatttattgt aagttaaaaa gacagacaac agatatacat aatgaaatct atttaacaaa 2761 atatcttcac tatctatcta tctacctatc ataaacaacg ctactaacaa acaaaatata 2821 tagaattata tatatatata ttacaacacc aacagacata caacatatat tgactcgaac 2881 aagctagaag atggattgat ttgaaaagtt gagctaaaac aattgttgct aaatattaag 2941 aagaaaaaaa caaatataca atacacttac acttaattca gagaatatcc ta