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LOCUS XM_013263588 2412 bp mRNA linear INV 02-SEP-2023 (LOC106096056), transcript variant X6, mRNA. ACCESSION XM_013263588 VERSION XM_013263588.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013263588.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2412 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2412 /gene="LOC106096056" /note="armadillo segment polarity protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106096056" CDS 156..2324 /gene="LOC106096056" /codon_start=1 /product="armadillo segment polarity protein isoform X5" /protein_id="XP_013119042.1" /db_xref="GeneID:106096056" /translation="MSFMQTQNRTMSHNNQYNPPELPPMVSSKEQTLMWQQNSYLVDS GIHSGAVTQAPSLSGKEDEEMEGDPLMFDLDTGFPQNFTQDQVDDMNQQLSQTRSQRV RAAMFPETLEEGIEIPSTQFDPQQPTAVQRLAEPSQMLKHAVVNLINYQDDAELATRA IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVRAISNSNDLES TKAAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDG SKMAVRLAGGLQKMVTLLQRNNVKFLAIVTDCLQILAYGNQESKLIILASGGPNELVR IMRSYDYEKLLWTTSRVLKVLSVCSSNKPAIVDAGGMQALAMHLSNPSPRLVQNCLWT LRNLSDAATKVDGLEGLLQSLVQVLASTDVNVVTCAAGILSNLTCNNQRNKATVCQVG GVDALVRTIINAGDREEITEPAVCALRHLTTRHADSEMAQNAVRLNYGLSVIVKLLHP PSRWPLIKAAIGLVRNLALCPANAAPLREHGAIHHLVRLLMRAFQDTERQRSSVATTG SQQPSAYADGVRMEEIVEGTVGALHILARESHNRALIRQQSVIPIFVRLLFNEIENIQ RVAAGVLCELAADKEGAEIIEQEGATGPLTDLLHSRNEGVATYAAAVLFRMSEDKPQD YKKRLSIELTNSLLREDNNIWGNADLGLGPDLQQDMILYQ" misc_feature 408..632 /gene="LOC106096056" /note="alpha-catenin binding domain found in Drosophila melanogaster armadillo segment polarity protein (dArm) and similar proteins; Region: CTNNAbd_dArm; cd21726" /db_xref="CDD:439243" misc_feature order(426..437,447..452,456..464,471..476,483..485, 537..545,549..554,561..566,573..575,582..608) /gene="LOC106096056" /note="putative CNTTA binding site [polypeptide binding]; other site" /db_xref="CDD:439243" misc_feature <603..>1067 /gene="LOC106096056" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 636..713 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 732..848 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 867..965 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(936..938,948..950,960..962,1062..1064,1074..1076, 1086..1088,1191..1193,1203..1205,1215..1217) /gene="LOC106096056" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 987..1097 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1113..1220 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1236..1349 /gene="LOC106096056" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1239..1346 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1383..1460 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(1431..1433,1443..1445,1455..1457,1563..1565, 1575..1577,1587..1589,1701..1703,1713..1715,1725..1727) /gene="LOC106096056" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1470..1598 /gene="LOC106096056" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1482..1598 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1623..1730 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(1905..1907,1917..1919,1929..1931,2028..2030, 2040..2042,2052..2054,2151..2153,2163..2165,2175..2177) /gene="LOC106096056" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1944..2063 /gene="LOC106096056" /note="Armadillo/beta-catenin-like repeat; Region: Arm; pfam00514" /db_xref="CDD:425727" misc_feature 1953..2063 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 2076..2180 /gene="LOC106096056" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" ORIGIN 1 ttcattcgtt tttgtgttcg tccgtcgctt atcaattgtc tgtgaaaatt tattaatttt 61 tcgacgtaaa aagtgattag aaataaaata aagtatatat aattgtcatt ttaaacattc 121 tgtgcggtgt ggtgtacaac gcctaaatca ccaaaatgag tttcatgcaa acacaaaatc 181 gtacaatgtc tcacaacaat cagtacaatc cgccggagtt gcctccaatg gtttcgtcaa 241 aggaacaaac cttgatgtgg caacaaaatt cttatctagt ggattctggt atccattcgg 301 gagctgtaac ccaagccccc tcattgtccg gcaaagaaga tgaagaaatg gagggtgatc 361 cattgatgtt cgatttggac acgggttttc cacagaattt tacccaagat caggtggatg 421 atatgaatca gcagctaagc cagacacgtt cgcaacgtgt acgtgccgcc atgtttcctg 481 aaacattgga ggagggcata gaaataccat caacacaatt tgatccacaa caaccgaccg 541 ctgtgcaacg tttggctgaa ccatcgcaaa tgttaaaaca tgctgttgtc aatttaatca 601 attatcaaga cgatgctgag ttggccactc gtgccatacc agaattgatc aaattgctta 661 acgatgaaga tcaagtagtt gtctcccaag cagccatgat ggtacaccaa ttgtcgaaga 721 aagaagcttc ccgtcatgcc attatgaaca gtccccaaat ggtggcagct cttgtgcgtg 781 ccatttcgaa tagtaacgat ttggaaagta ctaaagctgc cgttggtact cttcataatt 841 tgtcacatca tcggcaaggt ctcttggcta tattcaagag cggtggtata ccagctttgg 901 tgaaactgtt atcttctcct gttgagagtg ttctcttcta tgctataacc actttgcata 961 acttgttatt acatcaagat ggttcaaaaa tggccgtacg tttagctggc ggccttcaga 1021 agatggtcac tttgttgcaa cgcaataatg tcaaatttct agccattgtc acagattgtc 1081 tacaaatatt ggcctatggc aatcaagaaa gcaaattaat tatattggct tccggtggtc 1141 ccaatgaatt ggtgcgcatt atgcgttcct acgattacga gaagttgttg tggaccacat 1201 cgcgcgtctt gaaagtgttg tctgtttgtt ccagcaataa gccagctatt gtcgatgccg 1261 gcggtatgca ggcattggcc atgcatttat ccaatccctc gccgcgttta gtccaaaact 1321 gtctatggac tctgcgaaat ttgtctgatg ccgccaccaa ggttgatggc cttgaggggc 1381 ttttgcaatc gttggttcaa gttttagctt ctacagatgt caatgtagtc acttgcgccg 1441 ccggtatact ctcgaatttg acttgcaaca atcaacgcaa taaggctaca gtttgccaag 1501 taggaggcgt tgatgccctg gtacgtacca ttatcaatgc gggcgatcgt gaagaaatca 1561 ccgaaccagc tgtctgcgct ttgcgccatt tgaccacacg tcatgccgac tcggaaatgg 1621 ctcaaaatgc tgttcgtttg aattatggtt tgtcggtgat tgtaaaactt ttgcatccac 1681 catcccgttg gcctttgatc aaggcagcca ttgggctagt acgtaatctg gctttgtgtc 1741 cggccaatgc ggcaccgtta agggagcatg gagctataca tcacttggtt cgactcttga 1801 tgcgtgcttt ccaagacaca gaacgtcaac gttcttctgt tgccacaaca ggctcccaac 1861 aaccttcggc atacgctgat ggtgtccgta tggaggaaat tgttgaaggc acagttggcg 1921 ccttgcatat tctggccaga gagtcacata atcgtgcatt gatacgccaa caatcggtaa 1981 taccgatatt tgttcgttta ctcttcaatg agatagaaaa tatacagcgt gtggctgctg 2041 gcgttctttg tgaactggca gctgacaaag aaggcgctga aataatcgaa caagaaggtg 2101 ccactgggcc cttaacagat ttattacact cacgcaacga gggtgttgcc acctatgctg 2161 cagccgtatt attccgcatg agcgaagaca aaccgcaaga ttacaagaag cgtctatcca 2221 tagagttaac gaattcgcta ttacgcgaag ataataatat atggggaaat gcagacttag 2281 gcttgggtcc agatttacag caggatatga tactttacca atagactcta tgcagggtct 2341 tgaaatcagc agtcccgtag gaggcggtgg cggtggtggt gccccaccca gcgctgcacc 2401 aacttcacca ta