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LOCUS XM_013263458 3868 bp mRNA linear INV 02-SEP-2023 (LOC106095972), mRNA. ACCESSION XM_013263458 VERSION XM_013263458.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013263458.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3868 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3868 /gene="LOC106095972" /note="PDZ domain-containing protein 8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106095972" CDS 42..3317 /gene="LOC106095972" /codon_start=1 /product="PDZ domain-containing protein 8" /protein_id="XP_013118912.1" /db_xref="GeneID:106095972" /translation="MDINLSMLILLSFTFFIIGAVFMLLFQYYVYLKFSLLPEETAEQ KDINAKYTLPKALHQTARSINQSPTGGLSQAAATLNAATSGSASGSSAKDADASSLMS LNFVMQFLFHELKNSNRVRKWFYRKLSLELDELIAKTTTGKLFDKLTIKQLELGDQFP EIKTLRVHNIELDESGERIENLDLLMEIHYMGNFRTSIDADMVLGKKGSLTLKVKQLS GLARLQFTRNPYTHWSLSFLGDPELDLAIESRYQGRQMQSNITSLISNQIRKAVRRKH TLPNYKLRYKPFFHKTPEEDVGEGDIQPNGVLEVKVSEISRLMCPTHLTDIYCTITMA SLAFVEAWQQDDRHVKVSLDVEIHKAKNQQIGIIFKQSAADCVEIEAVLPNTPACKSN LKVGDILLAIEGKRVSTIQQVAKVIKSLQANVFCLRIDRVIPGIIRNDAILEDLDIYE DLGDARSGYSTVPVAKTPEPVAPSPNPIRSLAVAEKSTSSESSLSNTPTNSPKKTKLI AKALKKTISRDHGDGSSKDDEGKAKLSKLAAKQQLNLPKVPSRTNCESLLANLLPTTS NSAASGVNDVEHYYQHSTVDCKLSHLIHMEDVCNFKLDPHCKFLNISVYGKSLGENQL LGFTNIPIYQILAECCETSLSQSFKAYELNPPMPEDLKNHHLSAQSGFNPNLCFGDIL FAFTWDGNPNLSATETPSKHQAKLKSKSITSVDKTDDSGYSDNISIKSTDTIPSQPRA HNFVRTHFQRATQCDFCGKKIWLKDAMQCRECFMCCHKKCINKCQNATVCGPVDCSSA LQQQTPLVQTPEFMVTEPDIDVAVEPECDGSPNAADGCGAVGISKANAANNNGTTAAT TPGNLEVHRSSLTGLLAQGIKRVNSANNLAIPGIVSTIAGVTTSNTVATGGGGMVTPS AIAKSLPPSPQHTPSRKSSLVPSAPNTFDLVTHRLESLPVDVPSFTPEQVVFITEHII QLSRDEDVMSLAKNASRQLYSNVSGSERVEKINLLLTKLRLALDSETAIHSNLAASIK NGNNENINTTTTPSGDGINTQHQHNNKSNILGKSEERIQALSVIMLYLCTGLQHAQGV AMQ" misc_feature 336..908 /gene="LOC106095972" /note="synaptotagmin-like mitochondrial-lipid-binding protein (SMP) domain found in PDZ domain-containing protein 8 (PDZD8) and similar proteins; Region: SMP_PDZD8; cd21674" /db_xref="CDD:439230" misc_feature order(411..413,420..425,435..437,447..449,504..506, 519..521,603..605,621..623,627..629,633..635,684..686, 690..692,702..704,708..710,738..740,744..746,750..752, 780..782,843..845,852..857,876..878,882..893) /gene="LOC106095972" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:439230" misc_feature 1092..1361 /gene="LOC106095972" /note="permuted PDZ domain of Deg/high-temperature requirement factor A (HtrA) family of housekeeping serine proteases and related domains; Region: cpPDZ_Deg_HtrA-like; cl49614" /db_xref="CDD:483954" misc_feature 2253..2414 /gene="LOC106095972" /note="protein kinase C conserved region 1 (C1 domain) found in PDZ domain-containing protein 8 (PDZD8) and similar proteins; Region: C1_PDZD8; cd20825" /db_xref="CDD:410375" polyA_site 3868 /gene="LOC106095972" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcaatcatca tctgcgttaa acaaggcatc aatcattcaa tatggatata aatctctcaa 61 tgttgatatt gttaagcttt acttttttta taatcggcgc cgtcttcatg ctgctatttc 121 aatactatgt atatttgaaa ttctcactgt tgcccgagga gactgccgaa cagaaggata 181 taaatgccaa atacacactg ccgaaggctt tacatcagac cgcacgttct atcaatcaat 241 cgcctacggg aggtctttct caggcggcag ctacattgaa tgccgccacc tcaggctctg 301 ctagcggcag tagtgcaaag gatgcggatg catcgtcatt gatgtcattg aatttcgtca 361 tgcagttcct atttcacgag ttgaaaaatt caaatcgcgt gcgaaagtgg ttttatcgta 421 aactttcgct agagttggat gagttaatag ccaaaacaac aacggggaag ttgttcgaca 481 aattaacgat aaaacaactt gagctgggtg atcaatttcc ggagataaaa accttaagag 541 tgcacaatat tgaattggat gagagcggcg aacgaattga gaatttggat ttattaatgg 601 aaattcatta tatgggcaat ttccggacat ccattgatgc cgatatggtg cttggcaaaa 661 aaggttcatt gactctgaag gttaaacaac tctctggttt ggcccgctta cagttcacac 721 gcaaccctta tacccattgg tccctaagct ttttgggcga tcctgaattg gatttggcca 781 tagagtcacg ttaccaagga cggcagatgc aatcgaatat taccagtctc atatctaatc 841 aaatacgtaa agctgtacgg cgtaagcata cattgcccaa ttataagctt cgctacaagc 901 cattcttcca caaaacacca gaagaagatg tgggcgaagg cgacatccaa cccaatgggg 961 tactggaagt taaggtctcc gaaatatcac gtctcatgtg ccccacacac ctgaccgata 1021 tctattgcac tataacgatg gcttcgttgg cctttgtcga ggcttggcaa caggatgatc 1081 ggcatgtgaa ggtctcatta gacgtggaaa ttcataaggc taaaaatcag caaattggca 1141 ttatcttcaa acaatccgct gctgattgtg tggaaatcga ggcggtgctt ccgaatacac 1201 ctgcctgcaa atctaatttg aaagtgggtg atattctttt ggccatagag ggaaaacgtg 1261 tctccaccat acagcaagtg gccaaagtga ttaaaagtct acaggccaat gtgttttgtt 1321 tacgaatcga tcgcgtcata ccgggtatta tacgcaatga tgccatattg gaggatctgg 1381 atatctatga ggatttgggt gatgctcgtt cgggttatag tacagtacca gttgcaaaga 1441 caccagagcc tgttgcacca tcaccgaacc ccatacgttc cttggcggtg gcggagaaga 1501 gcacaagcag cgaatccagc cttagtaata ctcccacaaa ttcacccaaa aagacgaagc 1561 taatagcaaa ggctctcaag aagaccatta gccgggatca cggagatggt tcctcaaagg 1621 acgatgaggg caaagcgaaa ttgtcaaaac tagcggctaa gcaacagcta aatctaccta 1681 aagttccttc acgaacaaac tgcgagagtc tgttggccaa tttgttaccc accaccagca 1741 actcagcagc atcgggagtc aacgatgtcg aacattacta tcaacattcc accgtggatt 1801 gcaaactatc gcatcttata catatggaag atgtttgtaa tttcaaattg gatccccatt 1861 gtaaattttt aaacatctct gtctatggca aaagcctggg tgagaatcag ctgctgggct 1921 tcaccaacat tccaatttat cagatactgg ccgaatgttg tgagaccagt ttaagtcaaa 1981 gttttaaggc gtacgaattg aatcctccca tgccggaaga tttgaaaaat catcatttat 2041 ccgctcagtc cggatttaat cccaatctat gctttggaga catattgttc gctttcacat 2101 gggatggaaa tccaaatttg tcagcgacag aaacaccctc aaaacatcaa gcgaaactaa 2161 aatcaaaatc aataacatct gtggataaaa ccgacgacag cggttactcg gacaatattt 2221 ccatcaaatc aaccgacacg ataccctcac agcctcgagc gcataacttt gtacgcacac 2281 actttcaacg agccacccaa tgtgattttt gtggcaagaa aatttggctc aaagatgcca 2341 tgcagtgtcg tgagtgcttt atgtgttgcc acaaaaagtg tattaacaag tgtcagaatg 2401 ccaccgtatg tggtccagtc gattgttcgt cggctttgca acagcaaaca cctttggtgc 2461 agactcccga gtttatggta acagagcccg atatcgatgt ggcagtggaa ccggaatgtg 2521 atggttcacc caatgcggct gacggatgtg gtgccgttgg catctcaaag gctaatgcgg 2581 caaacaataa tggaacaact gccgctacaa cacctggtaa tttggaggta catcgttcaa 2641 gtttgaccgg attattggcc cagggtataa aacgtgtaaa ttcggccaat aatttggcca 2701 tacctggcat agtatcgact atagctggtg tcacgactag caatacagtg gccacaggag 2761 gcggtggtat ggtaacacca agtgccattg ccaaaagcct gccgccaagt ccgcagcata 2821 cgccttcaag gaaatcttca ttagtccctt cagctcccaa cactttcgat ttggtaactc 2881 atcgcctgga atcgctacct gtagatgttc caagctttac acctgaacaa gtggttttca 2941 taacagagca cattattcag ctttcccgag atgaagatgt catgagcctg gccaaaaatg 3001 ccagtaggca attatatagc aacgttagcg gtagcgaacg tgtggagaag attaatttat 3061 tgttaaccaa actccgtctg gcattggata gtgaaacggc aatccattcc aatttggcag 3121 catccattaa aaatggcaac aacgagaaca tcaacactac cacaactcca tcgggagatg 3181 gcatcaacac tcaacatcaa cacaataaca aatcaaatat tttagggaaa tcggaggaac 3241 gcatacaggc gcttagtgtt ataatgctgt atctgtgcac aggactgcaa catgcccagg 3301 gggtggctat gcaataaaat aacgaatgac atagcattac aggattaata tttcattata 3361 aaaaacaaac tcatacttat acacaaagac attggaatag atgggacgaa gggagagatt 3421 tattgaaaaa caaaaacaca actatacaca aataaggctg aaatcatttc aaaacaaaaa 3481 aaaacaacaa attaaacaaa aatcaatact aaattttatg gaattttgaa gtagtcaaat 3541 taaaagtatt agaaaagtag tatataagat aatctccctc ctttaaatga acaaaaaaaa 3601 aacaaagaaa actttctgct aaaattgaac tcctggggga taaatgttta actgacagat 3661 aaaaattata ccctatgata cttatttccg tagtatttct atatataaat gtatgtatat 3721 atacatacat atatactcat aaacgtatgt gagagtagtt atggattaat atctaaaata 3781 attttgatgt ataataattt tggttttcta caataacaaa ggaatgactt tttaatctaa 3841 agttaaaata aagagtatct ttaagaga