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LOCUS XM_013262960 5427 bp mRNA linear INV 02-SEP-2023 transcript variant X1, mRNA. ACCESSION XM_013262960 VERSION XM_013262960.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013262960.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5427 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5427 /gene="LOC106095672" /note="integrin alpha-PS1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106095672" CDS 1655..5056 /gene="LOC106095672" /codon_start=1 /product="integrin alpha-PS1 isoform X1" /protein_id="XP_013118414.2" /db_xref="GeneID:106095672" /translation="MYSLPKLITALFSTFYCVLYSHSFNLENRLPIVKFNANPSSYFG YSVATHIVGEYNWPNNTKWLLVGAPLDKNLQPGTNKTGALYKCPITQNFNDCEQVITD GRRSPEGVYEPTYDSDDIEELAEPSDDEIKEDQWLGVTVRSQGLGGKVLVCAHRYITK VRENRYGQGLCYVLTNELSYDEVYEPCKGRTVQRAHEDYGFCQVGTSAALFDDNTMVL GTPGPYTWRGTVFVTEIGGEYLERDKNMYYGDHSDSSSPVDKYSYLGMAVTGGRYFGE RMSYAAGAPRSNGHGQVVIFDKDNRNPIPVHMIIEGEQFASSFGYELTTADINGDQKP DLIVAAPFYFNKTEGGAVYIYQNVNDMLPYKATLKLTGTFESRFGLALANIGDINKDH CDDLAIGAPYEDDGVVYIYLGNRVGLNSKPSQRIQASDLGLMSRPIRTFGSSITGGAD LDGNSYTDVVVGAYASSAVVALLSRPIISIQTKWRSKELRNIDPTKSGCVADVFTNMT CFTFEACCSIDPYEETAANQDLKLMYTVEAETFASNKKFSRVFFDRENKRSNVVKREV TVRTDGRLACNQVTGYIKENTRDIQSPIKFKLNYTLVETKLPDSGLKGLNPILDQTQA NIEFEGTFQKDCGEDDVCDSNLILSAELDLNLENENYALVLGEQEEIRINVNVSNSAD SAYETQLFIVHQKSVSYIAAIKTSTAICSRFNETVVACGLGNPMRRGTSAQVSVRFDP SGLELEESKLTFNIFANTTSKLIGAKKPQKKLDVRVIKRAELSLQGWARPEQSFYSGE MKLESTKMQMEDVGSQVLHTYQIYNEGPWKAPKVQLTIYWPYQVYSEKDKRDKWLLYL EEIPIIDNVRQGQCFVSSEYVNPLNLTTKAKNKPNLEDILSAPASYMMKPLNKTQFAH RTHMEKSSYSSSKQEIIGEDFSSSSTTAGFLNRLRRDTLTRIIRPERFMDMRGDHKNK KRDIVELDCTKATASCIKIQCDIYNMPANTEAYVHVKARLWNSTLMSEHARADAVRII STAHVQIPPEFSVEQLQTAEPLTVETRAYPELIGQQRDTATPLWIIILAIIGGLLLLA FFTTAMWKCGFFKRRRPDPTLSGNLEKMNEEKPFLNAQKNNHRVF" ORIGIN 1 ggtatcatcg aaaaaaatac aagtaaacaa aagcgaaata aaaacaaaaa atcgttgaaa 61 atgaaatatt aaaaattgca taataagaag cttatcttaa gttaaaaaaa gataaccaaa 121 gaatttgttg gtactgaacg gaattgtttt gagtttggtc taaaaataag aaaaatggaa 181 tttgtcctgt taaccacgtg aatggaaatg tgaaatgtgt ctcaaattga aataaaaata 241 tatttttgat gagtaaaata aacaaatttg ggaaatagtt ttcaagtgca tttatgttat 301 tttgataatt tgaatatcaa gtgttttcgt gagagttctg aactacctgc ttgcctgtct 361 gcctgccacc caacatcgtt agaagctgca ttatcaaggc aacacaagtg cattttacaa 421 ctaccagccg ttgtggacta cccagccaac agccactata cgaggcaaac aaccagccgg 481 gcaatttaag tcaacctacc tgttgtgagg tgttaaagtg ttttgttttt tttttttttt 541 tttgtttcta acgcacaggc agacaacgaa tggtgacggt gtgcatcttt tgtgaaggtt 601 aattgttggt accactgacc atccatcgtt aagggagaga gaatcgtttg tctgtctgtc 661 ggtgtagcat ctctgttggg tgctcaaaac aaaacagaaa tcataagaaa acatttccaa 721 ccagacttag ttttgccagt ttctaagtaa atgcaaaata ccatgaatta aacataccaa 781 agacgaagcc taaacccagt ggttgtcgtt gtgtatgtca atgccaaaca acaacaacaa 841 caataaaagg ggcgacatta acaacaacaa aaatagccac attgtccaaa aagcactaat 901 tcttagtggt aaacaacttt agtaaaccaa gtccatacaa gttgcgatac aattattgtt 961 ctaccctctc ttcatctcac actcattcac tctttcatac tcatccccca ccacatgcta 1021 tcaaaataca acaccttaga aaaccaaaca aagcctctgc tcttttggga tatatgtgtg 1081 agagtaaaga agcagcagca gcagcagcag cacgttttat agggaacaca agagtgagtg 1141 tttgtgtatg tgtgtgtgtt tgagagatat cataaaagaa aagtatagct ctgcaacaac 1201 agacaacgtg accagtgacc ggttttaacg attaatttaa agttgtttac atactactct 1261 cctctccaga tctctaaccg gccgatttcg agatcacagt gctaagctaa acagctaagt 1321 ttaaggcaat tcccaagaaa aacccagcca catggcctac aattaaaaaa aaacaaaaca 1381 aagaagaaga aaaaacacca acaaaaaagt tccccatagc agaaaaaagg gaataccaaa 1441 caaacgaagg aggccaaata cttttggcgc ccatgaaagt gcaaaaagga tgcttttctc 1501 cccccttttt tttgcgatat aaaatgaaaa acttgtgaac aaacaaaaca aaacaaaaat 1561 cgaatattat tttagtcttt gtttaaaagg gaaaaacaaa aatatttcta agggatttta 1621 ttttgcacac ctactccaac tctataccac aaaaatgtat agcttaccga agttaataac 1681 ggcgctgttc tcaaccttct actgtgtgct gtactcgcac agctttaatc tggaaaaccg 1741 cctgcccatt gttaaattca atgcgaatcc ctcatcatat tttgggtatt cagtagcaac 1801 acacatcgtt ggcgaatata attggccaaa taatacaaaa tggcttcttg ttggcgctcc 1861 tttggataag aatctacaac caggcaccaa taaaacgggt gctctctaca aatgccctat 1921 aacgcaaaat ttcaacgact gcgaacaggt tataacggat ggtagaagat cgcctgaagg 1981 agtctatgaa cctacctacg acagcgatga tattgaagag cttgcagaac cctcagacga 2041 tgaaataaaa gaggatcaat ggttgggtgt cactgtacga agtcagggct taggcggcaa 2101 ggttttagtc tgcgcccatc gctacataac caaggtacgc gaaaatcgtt atggccaagg 2161 tctctgctat gtgttaacca acgaattaag ttacgatgaa gtttatgagc catgtaaagg 2221 ccgcaccgtc caaagagccc acgaagatta tggcttttgt caggtgggca cctctgctgc 2281 cttgttcgat gacaacacca tggtgttggg cacccctggc ccctatacat ggcgtggcac 2341 ggtttttgtc accgagattg gcggtgaata tttggagcgt gataagaaca tgtattatgg 2401 agatcattcg gatagctctt caccagtgga caaatacagt tatttgggca tggctgttac 2461 ggggggcaga tactttggag aacgcatgtc ttatgctgcc ggtgctcctc gctccaatgg 2521 tcatggccag gtggttatct ttgacaagga taatcgcaat cccatacccg tgcacatgat 2581 catcgagggt gaacagtttg cctcaagttt tggttatgag ctgaccacag ccgatataaa 2641 tggtgaccag aaaccagatc tcattgtagc ggcccccttc tatttcaaca aaaccgaggg 2701 aggagctgtg tacatctatc aaaatgtcaa tgatatgctg ccctataagg ccaccctgaa 2761 gttgacgggt acctttgaaa gtcgttttgg cttggctctg gccaacattg gtgatataaa 2821 caaggatcat tgcgatgatt tggccatagg agccccctat gaagatgacg gagtggtcta 2881 catttatcta ggcaatcgag taggtttaaa ttcgaaaccc tcccaaagaa tacaggcctc 2941 agatttgggg ctaatgtcac gacccataag gacttttggc agctccataa cgggaggagc 3001 tgatttggat ggcaattcct acaccgatgt ggtggtggga gcttatgcct cttctgccgt 3061 tgtagccctg ctctctcgcc ccatcataag catacaaacc aaatggagaa gtaaagagct 3121 taggaatatt gatcccacca agagcggttg tgtcgctgat gtcttcacca acatgacatg 3181 tttcaccttt gaggcctgtt gctccataga tccgtatgag gagactgccg ccaatcagga 3241 tttgaaattg atgtataccg tggaggctga aacttttgca tccaacaaga aattctctcg 3301 tgtctttttt gatcgcgaaa ataaacgcag caatgtggtg aaacgcgagg taactgtgag 3361 aaccgatggg cgccttgcgt gtaatcaagt taccggctac attaaggaga atacgcgtga 3421 cattcaaagt cccattaaat ttaaactgaa ctacacgttg gtggaaacga aattgcccga 3481 ctctggcctc aaaggtttaa atcccatatt ggatcaaacg caggcgaata ttgaatttga 3541 gggtaccttc cagaaggatt gtggagagga tgatgtctgc gatagcaatt tgatactgag 3601 tgcggagctg gacttgaact tggagaacga aaactatgcc ttggtcttgg gagaacagga 3661 agaaattcgc attaatgtca atgtatcgaa tagtgcagat tctgcctacg aaactcaact 3721 atttatagta catcagaaga gtgtatctta tatagcagcc attaaaacga gcactgctat 3781 atgcagtcgc tttaatgaaa ctgtggttgc ttgcggcctg ggcaatccta tgcgccgcgg 3841 tacatctgcc caagtctcag tgcgattcga tcccagcggt ctggagttgg aagagagtaa 3901 attgactttc aatatatttg ccaataccac atcgaaatta attggagcca aaaagccaca 3961 aaagaaatta gatgtcagag ttataaagag ggctgaatta agtctacaag gttgggctag 4021 acctgaacag agcttctata gcggtgaaat gaaattggag agcacgaaga tgcaaatgga 4081 agatgtgggc tcacaagtgc tgcatactta tcagatctac aacgaaggcc cttggaaagc 4141 acccaaagta caattgacca tctactggcc gtaccaggta tacagtgaaa aggataaacg 4201 cgacaaatgg ctattgtatt tggaggaaat ccccattatc gataatgtac gacaaggaca 4261 atgttttgtc tcctccgaat atgtgaatcc ccttaatcta acaacaaaag cgaaaaacaa 4321 acccaatttg gaggatattc tttcggcacc ggcctcctat atgatgaaac ctttgaataa 4381 gacacaattt gcccatcgca cccatatgga aaaatccagc tatagcagta gcaaacaaga 4441 aatcatcggc gaagattttt cttcttcatc cactacagca ggttttctga atcgcttacg 4501 ccgcgatacc ttaacacgca tcataaggcc ggaacgtttt atggatatgc gtggagatca 4561 taaaaataag aaacgtgaca ttgtagaatt ggattgtaca aaggccacag cgagttgtat 4621 taagatacaa tgtgatattt acaatatgcc agcgaataca gaagcatatg tacatgttaa 4681 ggcacgtttg tggaattcaa cactgatgtc ggaacatgcc agagccgatg cggtgagaat 4741 aatatcgaca gcgcatgtgc aaataccacc agaatttagt gtggaacaat tgcaaacagc 4801 cgaaccttta acggtggaaa ctcgtgcata tcctgaattg ataggtcaac aacgtgatac 4861 agccacaccg ctgtggatta ttatcttggc cattattggc ggactactgc tgctggcctt 4921 cttcaccact gccatgtgga agtgtggctt cttcaagaga cggaggccgg atccgacgtt 4981 aagtggcaat ttagaaaaga tgaatgagga gaaacccttc ctaaatgcgc agaaaaataa 5041 tcatcgcgtt ttctaacaag aagggactgt tgggtgggat cttatgcaac agcaacaaat 5101 gcgacagcca acggctaagc caccaaaagt ttgctgtggc gatagtgcaa ctaatagtga 5161 tacttatgat tactggcaag cgtttcaaca gaacaacaac aacaacaata ataatagcaa 5221 caacaataat aataattaca ataacaacta taatagttat aatatgaaca atgaggcctg 5281 cgttatagac tggggctctc tgtaggggcc aaactagtga aacaacatca aaaaaaaaaa 5341 acaagtataa gcgtgctaag ttcggtcggg ccgaatctta tataccctcc accatggatc 5401 gcatttgtcg atttcttttc ccggcat